RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 GAR1Q9NY12 217 aaKnown RBP13.61□□□□□ -0.23
SQSTM1-209ENST00000504627 IGKV1D-37A0A075B6S9 117 aa13.6□□□□□ -0.23
SQSTM1-209ENST00000504627 TRAV30A0A087WSZ9 112 aa13.6□□□□□ -0.23
SQSTM1-209ENST00000504627 ZFP92A6NM28 416 aa13.6□□□□□ -0.23
SQSTM1-209ENST00000504627 UMAD1C9J7I0 102 aa13.6□□□□□ -0.23
SQSTM1-209ENST00000504627 IGLC1P0CG04 106 aa13.6□□□□□ -0.23
SQSTM1-209ENST00000504627 OR10J1P30954 320 aa13.6□□□□□ -0.23
SQSTM1-209ENST00000504627 RPL29P47914 159 aaKnown RBP13.6□□□□□ -0.23
SQSTM1-209ENST00000504627 CD81P60033 236 aa13.6□□□□□ -0.23
SQSTM1-209ENST00000504627 SELENOTP62341 195 aa13.6□□□□□ -0.23
SQSTM1-209ENST00000504627 FAM106AQ4KMX7 169 aa13.6□□□□□ -0.23
SQSTM1-209ENST00000504627 ZNF502Q8TBZ5 544 aa13.6□□□□□ -0.23
SQSTM1-209ENST00000504627 CCDC140Q96MF4 163 aa13.6□□□□□ -0.23
SQSTM1-209ENST00000504627 TRBV7-1A0A0A6YYK4 115 aa13.59□□□□□ -0.23
SQSTM1-209ENST00000504627 ZNF320A2RRD8 509 aa13.59□□□□□ -0.23
SQSTM1-209ENST00000504627 C2orf70A6NJV1 201 aa13.59□□□□□ -0.23
SQSTM1-209ENST00000504627 F8W735 103 aaPredicted RBP13.59□□□□□ -0.23
SQSTM1-209ENST00000504627 LGALS9O00182 355 aa13.59□□□□□ -0.23
SQSTM1-209ENST00000504627 FABP1P07148 127 aa13.59□□□□□ -0.23
SQSTM1-209ENST00000504627 FOLR2P14207 255 aa13.59□□□□□ -0.23
SQSTM1-209ENST00000504627 SULT1A2P50226 295 aa13.59□□□□□ -0.23
SQSTM1-209ENST00000504627 RAB5CP51148 216 aa13.59□□□□□ -0.23
SQSTM1-209ENST00000504627 ADAMTSL5Q6ZMM2 481 aa13.59□□□□□ -0.23
SQSTM1-209ENST00000504627 CYP2G1PQ6ZSU1 146 aa13.59□□□□□ -0.23
SQSTM1-209ENST00000504627 GPHB5Q86YW7 130 aa13.59□□□□□ -0.23
SQSTM1-209ENST00000504627 LRRC20Q8TCA0 184 aa13.59□□□□□ -0.23
SQSTM1-209ENST00000504627 SPATA25Q9BR10 227 aa13.59□□□□□ -0.23
SQSTM1-209ENST00000504627 SLC45A2Q9UMX9 530 aa13.59□□□□□ -0.23
SQSTM1-209ENST00000504627 PXMP4Q9Y6I8 212 aa13.59□□□□□ -0.23
SQSTM1-209ENST00000504627 DNAH7Q8WXX0 4024 aa13.58□□□□□ -0.24
SQSTM1-209ENST00000504627 GNG7O60262 68 aa13.58□□□□□ -0.24
SQSTM1-209ENST00000504627 MBP02144 154 aa13.58□□□□□ -0.24
SQSTM1-209ENST00000504627 CLEC3BP05452 202 aa13.58□□□□□ -0.24
SQSTM1-209ENST00000504627 B2MP61769 119 aa13.58□□□□□ -0.24
SQSTM1-209ENST00000504627 PRR20EP86478 221 aa13.58□□□□□ -0.24
SQSTM1-209ENST00000504627 PRR20CP86479 221 aa13.58□□□□□ -0.24
SQSTM1-209ENST00000504627 PRR20DP86480 221 aa13.58□□□□□ -0.24
SQSTM1-209ENST00000504627 PRR20BP86481 221 aa13.58□□□□□ -0.24
SQSTM1-209ENST00000504627 PRR20AP86496 221 aa13.58□□□□□ -0.24
SQSTM1-209ENST00000504627 GUCA2BQ16661 112 aa13.58□□□□□ -0.24
SQSTM1-209ENST00000504627 HAGHQ16775 308 aa13.58□□□□□ -0.24
SQSTM1-209ENST00000504627 DEFB114Q30KQ6 69 aa13.58□□□□□ -0.24
SQSTM1-209ENST00000504627 Q56UQ5 140 aa13.58□□□□□ -0.24
SQSTM1-209ENST00000504627 AKR1C8PQ5T2L2 129 aa13.58□□□□□ -0.24
SQSTM1-209ENST00000504627 CASC10Q5T4H9 136 aa13.58□□□□□ -0.24
SQSTM1-209ENST00000504627 TMEM182Q6ZP80 229 aaPredicted RBP13.58□□□□□ -0.24
SQSTM1-209ENST00000504627 STPG3Q8N7X2 389 aa13.58□□□□□ -0.24
SQSTM1-209ENST00000504627 CITED4Q96RK1 184 aa13.58□□□□□ -0.24
SQSTM1-209ENST00000504627 TECRQ9NZ01 308 aaKnown RBP13.58□□□□□ -0.24
SQSTM1-209ENST00000504627 FFAR4Q5NUL3 377 aa13.57□□□□□ -0.24
SQSTM1-209ENST00000504627 FAM74A1Q5RGS3 127 aa13.57□□□□□ -0.24
SQSTM1-209ENST00000504627 DPPA3Q6W0C5 159 aa13.57□□□□□ -0.24
SQSTM1-209ENST00000504627 RNF141Q8WVD5 230 aa13.57□□□□□ -0.24
SQSTM1-209ENST00000504627 SLC39A9Q9NUM3 307 aa13.57□□□□□ -0.24
SQSTM1-209ENST00000504627 ZNF785A8K8V0 405 aa13.56□□□□□ -0.24
SQSTM1-209ENST00000504627 IGKV1-17P01599 117 aa13.56□□□□□ -0.24
SQSTM1-209ENST00000504627 EDN2P20800 178 aa13.56□□□□□ -0.24
SQSTM1-209ENST00000504627 CBLN1P23435 193 aa13.56□□□□□ -0.24
SQSTM1-209ENST00000504627 ELLP55199 621 aaPredicted RBP13.56□□□□□ -0.24
SQSTM1-209ENST00000504627 TMEM41BQ5BJD5 291 aa13.56□□□□□ -0.24
SQSTM1-209ENST00000504627 MIC13Q5XKP0 118 aa13.56□□□□□ -0.24
SQSTM1-209ENST00000504627 NUPL2O15504 423 aaKnown RBP13.55□□□□□ -0.24
SQSTM1-209ENST00000504627 TOMM40O96008 361 aa13.55□□□□□ -0.24
SQSTM1-209ENST00000504627 CD7P09564 240 aa13.55□□□□□ -0.24
SQSTM1-209ENST00000504627 GPR183P32249 361 aa13.55□□□□□ -0.24
SQSTM1-209ENST00000504627 YPEL3P61236 119 aaPredicted RBP13.55□□□□□ -0.24
SQSTM1-209ENST00000504627 ACOT6Q3I5F7 207 aaPredicted RBP13.55□□□□□ -0.24
SQSTM1-209ENST00000504627 SPSB3Q6PJ21 355 aa13.55□□□□□ -0.24
SQSTM1-209ENST00000504627 BPIFCQ8NFQ6 507 aa13.55□□□□□ -0.24
SQSTM1-209ENST00000504627 PLA2G2EQ9NZK7 142 aa13.55□□□□□ -0.24
SQSTM1-209ENST00000504627 RFNGQ9Y644 331 aa13.55□□□□□ -0.24
SQSTM1-209ENST00000504627 TGOLN2O43493 480 aa13.54□□□□□ -0.24
SQSTM1-209ENST00000504627 LINC00869P0C866 280 aa13.54□□□□□ -0.24
SQSTM1-209ENST00000504627 M6PRP20645 277 aa13.54□□□□□ -0.24
SQSTM1-209ENST00000504627 RAB14P61106 215 aa13.54□□□□□ -0.24
SQSTM1-209ENST00000504627 ZNF90Q03938 601 aa13.54□□□□□ -0.24
SQSTM1-209ENST00000504627 TIGITQ495A1 244 aa13.54□□□□□ -0.24
SQSTM1-209ENST00000504627 PXDC1Q5TGL8 231 aa13.54□□□□□ -0.24
SQSTM1-209ENST00000504627 DEFB125Q8N687 156 aa13.54□□□□□ -0.24
SQSTM1-209ENST00000504627 SAT2Q96F10 170 aaPredicted RBP13.54□□□□□ -0.24
SQSTM1-209ENST00000504627 SELENOKQ9Y6D0 94 aa13.54□□□□□ -0.24
SQSTM1-209ENST00000504627 TMEM213A2RRL7 107 aa13.53□□□□□ -0.24
SQSTM1-209ENST00000504627 OR2T8A6NH00 312 aa13.53□□□□□ -0.24
SQSTM1-209ENST00000504627 A8MWP6 167 aa13.53□□□□□ -0.24
SQSTM1-209ENST00000504627 OR11H12B2RN74 326 aa13.53□□□□□ -0.24
SQSTM1-209ENST00000504627 YIF1AO95070 293 aa13.53□□□□□ -0.24
SQSTM1-209ENST00000504627 RAB2AP61019 212 aa13.53□□□□□ -0.24
SQSTM1-209ENST00000504627 CLLU1Q5K131 121 aa13.53□□□□□ -0.24
SQSTM1-209ENST00000504627 Q6ZRG5 221 aa13.53□□□□□ -0.24
SQSTM1-209ENST00000504627 IGHV3-35A0A0C4DH35 117 aa13.52□□□□□ -0.25
SQSTM1-209ENST00000504627 ZNF705EA8MWA4 302 aaPredicted RBP13.52□□□□□ -0.25
SQSTM1-209ENST00000504627 CTSGP08311 255 aa13.52□□□□□ -0.25
SQSTM1-209ENST00000504627 NMBP08949 121 aa13.52□□□□□ -0.25
SQSTM1-209ENST00000504627 ADMP35318 185 aa13.52□□□□□ -0.25
SQSTM1-209ENST00000504627 PLP1P60201 277 aa13.52□□□□□ -0.25
SQSTM1-209ENST00000504627 ZFAND6Q6FIF0 208 aa13.52□□□□□ -0.25
SQSTM1-209ENST00000504627 OR51G1Q8NGK1 321 aa13.52□□□□□ -0.25
SQSTM1-209ENST00000504627 FAM213BQ8TBF2 198 aa13.52□□□□□ -0.25
SQSTM1-209ENST00000504627 PFDN5Q99471 154 aa13.52□□□□□ -0.25
SQSTM1-209ENST00000504627 SRD5A3Q9H8P0 318 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 105.3 ms