RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 LAMTOR3Q9UHA4 124 aa2.52□□□□□ -2.01
VPS13D-207ENST00000476169 ERGIC3Q9Y282 383 aa2.52□□□□□ -2.01
VPS13D-207ENST00000476169 HEY1Q9Y5J3 304 aa2.52□□□□□ -2.01
VPS13D-207ENST00000476169 NACAE9PAV3 2078 aa2.51□□□□□ -2.01
VPS13D-207ENST00000476169 NID2Q14112 1375 aa2.51□□□□□ -2.01
VPS13D-207ENST00000476169 ZNF638Q14966 1978 aaKnown RBP2.51□□□□□ -2.01
VPS13D-207ENST00000476169 IRGMA1A4Y4 181 aa2.51□□□□□ -2.01
VPS13D-207ENST00000476169 BUB1B-PAK6H3BSN5 160 aa2.51□□□□□ -2.01
VPS13D-207ENST00000476169 H3BT86 120 aa2.51□□□□□ -2.01
VPS13D-207ENST00000476169 KPNA4O00629 521 aaPredicted RBP2.51□□□□□ -2.01
VPS13D-207ENST00000476169 SYNGR2O43760 224 aa2.51□□□□□ -2.01
VPS13D-207ENST00000476169 ZNF22P17026 224 aaPredicted RBP2.51□□□□□ -2.01
VPS13D-207ENST00000476169 NFYBP25208 207 aa2.51□□□□□ -2.01
VPS13D-207ENST00000476169 SRP14P37108 136 aaKnown RBP2.51□□□□□ -2.01
VPS13D-207ENST00000476169 XCL1P47992 114 aa2.51□□□□□ -2.01
VPS13D-207ENST00000476169 YPEL3P61236 119 aaPredicted RBP2.51□□□□□ -2.01
VPS13D-207ENST00000476169 EIF5AP63241 154 aaKnown RBP2.51□□□□□ -2.01
VPS13D-207ENST00000476169 EIF4EBP2Q13542 120 aaPredicted RBP2.51□□□□□ -2.01
VPS13D-207ENST00000476169 CCDC58Q4VC31 144 aa2.51□□□□□ -2.01
VPS13D-207ENST00000476169 LYPD6Q86Y78 171 aa2.51□□□□□ -2.01
VPS13D-207ENST00000476169 TMEM86AQ8N2M4 240 aa2.51□□□□□ -2.01
VPS13D-207ENST00000476169 OR8D4Q8NGM9 314 aa2.51□□□□□ -2.01
VPS13D-207ENST00000476169 SMCR5Q8TEV8 140 aa2.51□□□□□ -2.01
VPS13D-207ENST00000476169 CCDC115Q96NT0 180 aa2.51□□□□□ -2.01
VPS13D-207ENST00000476169 IMMP2LQ96T52 175 aa2.51□□□□□ -2.01
VPS13D-207ENST00000476169 DOHHQ9BU89 302 aa2.51□□□□□ -2.01
VPS13D-207ENST00000476169 OR8D2Q9GZM6 311 aa2.51□□□□□ -2.01
VPS13D-207ENST00000476169 SIPA1L1O43166 1804 aa2.51□□□□□ -2.01
VPS13D-207ENST00000476169 A0A1B0GUL6 1792 aa2.51□□□□□ -2.01
VPS13D-207ENST00000476169 DDX60LQ5H9U9 1706 aaKnown RBP2.51□□□□□ -2.01
VPS13D-207ENST00000476169 ARAP2Q8WZ64 1704 aa2.51□□□□□ -2.01
VPS13D-207ENST00000476169 THADAQ6YHU6 1953 aa2.5□□□□□ -2.01
VPS13D-207ENST00000476169 IGKV2-28A0A075B6P5 120 aa2.5□□□□□ -2.01
VPS13D-207ENST00000476169 A0A0J9YW62 118 aa2.5□□□□□ -2.01
VPS13D-207ENST00000476169 H3BPC8 53 aa2.5□□□□□ -2.01
VPS13D-207ENST00000476169 M0QZK8 103 aa2.5□□□□□ -2.01
VPS13D-207ENST00000476169 TAX1BP3O14907 124 aa2.5□□□□□ -2.01
VPS13D-207ENST00000476169 IGKV2D-28P01615 120 aa2.5□□□□□ -2.01
VPS13D-207ENST00000476169 IGHV3-7P01780 117 aa2.5□□□□□ -2.01
VPS13D-207ENST00000476169 C1QAP02745 245 aa2.5□□□□□ -2.01
VPS13D-207ENST00000476169 BPGMP07738 259 aa2.5□□□□□ -2.01
VPS13D-207ENST00000476169 KRTAP10-7P60409 375 aaPredicted RBP2.5□□□□□ -2.01
VPS13D-207ENST00000476169 CDC42P60953 191 aa2.5□□□□□ -2.01
VPS13D-207ENST00000476169 RPS11P62280 158 aaKnown RBP eCLIP2.5□□□□□ -2.01
VPS13D-207ENST00000476169 EBI3Q14213 229 aa2.5□□□□□ -2.01
VPS13D-207ENST00000476169 RRN3P1Q2M238 152 aa2.5□□□□□ -2.01
VPS13D-207ENST00000476169 CHCHD2P9Q5T1J5 151 aaPredicted RBP2.5□□□□□ -2.01
VPS13D-207ENST00000476169 LCE1EQ5T753 118 aa2.5□□□□□ -2.01
VPS13D-207ENST00000476169 BCL2L15Q5TBC7 163 aa2.5□□□□□ -2.01
VPS13D-207ENST00000476169 DEFB128Q7Z7B8 93 aa2.5□□□□□ -2.01
VPS13D-207ENST00000476169 KTN1-AS1Q86SY8 53 aa2.5□□□□□ -2.01
VPS13D-207ENST00000476169 OR52R1Q8NGF1 315 aa2.5□□□□□ -2.01
VPS13D-207ENST00000476169 TCEAL4Q96EI5 215 aa2.5□□□□□ -2.01
VPS13D-207ENST00000476169 TSC22D3Q99576 134 aa2.5□□□□□ -2.01
VPS13D-207ENST00000476169 TM2D3Q9BRN9 247 aa2.5□□□□□ -2.01
VPS13D-207ENST00000476169 TUBA4BQ9H853 241 aa2.5□□□□□ -2.01
VPS13D-207ENST00000476169 OSTCQ9NRP0 149 aa2.5□□□□□ -2.01
VPS13D-207ENST00000476169 MYH3P11055 1940 aa2.5□□□□□ -2.01
VPS13D-207ENST00000476169 DSCAMO60469 2012 aa2.49□□□□□ -2.01
VPS13D-207ENST00000476169 CEP350Q5VT06 3117 aa2.49□□□□□ -2.01
VPS13D-207ENST00000476169 TMEM235A6NFC5 223 aa2.49□□□□□ -2.01
VPS13D-207ENST00000476169 ZNF860A6NHJ4 632 aa2.49□□□□□ -2.01
VPS13D-207ENST00000476169 SLC22A1O15245 554 aa2.49□□□□□ -2.01
VPS13D-207ENST00000476169 FAM107AO95990 144 aa2.49□□□□□ -2.01
VPS13D-207ENST00000476169 PPBPP02775 128 aa2.49□□□□□ -2.01
VPS13D-207ENST00000476169 UCHL1P09936 223 aa2.49□□□□□ -2.01
VPS13D-207ENST00000476169 PSPHP78330 225 aa2.49□□□□□ -2.01
VPS13D-207ENST00000476169 DEFB103AP81534 67 aa2.49□□□□□ -2.01
VPS13D-207ENST00000476169 AMMECR1LQ6DCA0 310 aa2.49□□□□□ -2.01
VPS13D-207ENST00000476169 Q8NAQ8 132 aa2.49□□□□□ -2.01
VPS13D-207ENST00000476169 NUP35Q8NFH5 326 aa2.49□□□□□ -2.01
VPS13D-207ENST00000476169 PPTC7Q8NI37 304 aa2.49□□□□□ -2.01
VPS13D-207ENST00000476169 THEM6Q8WUY1 208 aa2.49□□□□□ -2.01
VPS13D-207ENST00000476169 SCGB3A1Q96QR1 104 aa2.49□□□□□ -2.01
VPS13D-207ENST00000476169 HIGD2AQ9BW72 106 aa2.49□□□□□ -2.01
VPS13D-207ENST00000476169 OR52A1Q9UKL2 312 aa2.49□□□□□ -2.01
VPS13D-207ENST00000476169 TRAPPC2LQ9UL33 140 aa2.49□□□□□ -2.01
VPS13D-207ENST00000476169 LAMTOR2Q9Y2Q5 125 aa2.49□□□□□ -2.01
VPS13D-207ENST00000476169 Q9Y3F1 56 aa2.49□□□□□ -2.01
VPS13D-207ENST00000476169 RBM7Q9Y580 266 aaKnown RBP2.49□□□□□ -2.01
VPS13D-207ENST00000476169 TIMM9Q9Y5J7 89 aa2.49□□□□□ -2.01
VPS13D-207ENST00000476169 MINOS1-NBL1R4GNA1 71 aa2.49□□□□□ -2.01
VPS13D-207ENST00000476169 ZSWIM8A7E2V4 1837 aa2.49□□□□□ -2.01
VPS13D-207ENST00000476169 VIRMAQ69YN4 1812 aaKnown RBP2.49□□□□□ -2.01
VPS13D-207ENST00000476169 SPEF2Q9C093 1822 aa2.49□□□□□ -2.01
VPS13D-207ENST00000476169 DOCK6Q96HP0 2047 aa2.49□□□□□ -2.01
VPS13D-207ENST00000476169 ATG2BQ96BY7 2078 aa2.48□□□□□ -2.01
VPS13D-207ENST00000476169 A0A087X0T9 212 aa2.48□□□□□ -2.01
VPS13D-207ENST00000476169 IGHV3-15A0A0B4J1V0 119 aa2.48□□□□□ -2.01
VPS13D-207ENST00000476169 A0A1B0GU33 70 aa2.48□□□□□ -2.01
VPS13D-207ENST00000476169 C11orf86A6NJI1 115 aa2.48□□□□□ -2.01
VPS13D-207ENST00000476169 DEGS1O15121 323 aa2.48□□□□□ -2.01
VPS13D-207ENST00000476169 GADD45GO95257 159 aa2.48□□□□□ -2.01
VPS13D-207ENST00000476169 RPL7P18124 248 aaKnown RBP2.48□□□□□ -2.01
VPS13D-207ENST00000476169 RPL28P46779 137 aaKnown RBP2.48□□□□□ -2.01
VPS13D-207ENST00000476169 CKS1BP61024 79 aa2.48□□□□□ -2.01
VPS13D-207ENST00000476169 EIF4EBP1Q13541 118 aaPredicted RBP2.48□□□□□ -2.01
VPS13D-207ENST00000476169 KISS1Q15726 138 aa2.48□□□□□ -2.01
VPS13D-207ENST00000476169 LINC01554Q52M75 96 aa2.48□□□□□ -2.01
VPS13D-207ENST00000476169 DNLZQ5SXM8 178 aa2.48□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms