RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 RNF24Q9Y225 148 aa5.13□□□□□ -1.59
VPS41-208ENST00000448833 TMED3Q9Y3Q3 217 aa5.13□□□□□ -1.59
VPS41-208ENST00000448833 IGHV4-4A0A075B6R2 117 aa5.12□□□□□ -1.59
VPS41-208ENST00000448833 DEFB131BA0A096LNP1 70 aa5.12□□□□□ -1.59
VPS41-208ENST00000448833 ISLRO14498 428 aa5.12□□□□□ -1.59
VPS41-208ENST00000448833 SPART-AS1P0CW21 52 aa5.12□□□□□ -1.59
VPS41-208ENST00000448833 HLA-DRB4P13762 266 aa5.12□□□□□ -1.59
VPS41-208ENST00000448833 TNFSF8P32971 234 aa5.12□□□□□ -1.59
VPS41-208ENST00000448833 S100A5P33763 92 aa5.12□□□□□ -1.59
VPS41-208ENST00000448833 GAMTQ14353 236 aa5.12□□□□□ -1.59
VPS41-208ENST00000448833 EBLN2Q6P2I7 272 aa5.12□□□□□ -1.59
VPS41-208ENST00000448833 FOXI2Q6ZQN5 318 aa5.12□□□□□ -1.59
VPS41-208ENST00000448833 LINC00336Q6ZUF6 198 aa5.12□□□□□ -1.59
VPS41-208ENST00000448833 LYZL2Q7Z4W2 148 aa5.12□□□□□ -1.59
VPS41-208ENST00000448833 OR8I2Q8N0Y5 310 aa5.12□□□□□ -1.59
VPS41-208ENST00000448833 Q8N3U1 123 aa5.12□□□□□ -1.59
VPS41-208ENST00000448833 TOMM5Q8N4H5 51 aa5.12□□□□□ -1.59
VPS41-208ENST00000448833 LRTM2Q8N967 370 aa5.12□□□□□ -1.59
VPS41-208ENST00000448833 OR4D5Q8NGN0 318 aa5.12□□□□□ -1.59
VPS41-208ENST00000448833 MCFD2Q8NI22 146 aa5.12□□□□□ -1.59
VPS41-208ENST00000448833 COQ8AQ8NI60 647 aa5.12□□□□□ -1.59
VPS41-208ENST00000448833 GPR82Q96P67 336 aa5.12□□□□□ -1.59
VPS41-208ENST00000448833 TRGV9Q99603 122 aa5.12□□□□□ -1.59
VPS41-208ENST00000448833 NDUFAF3Q9BU61 184 aa5.12□□□□□ -1.59
VPS41-208ENST00000448833 PBDC1Q9BVG4 233 aa5.12□□□□□ -1.59
VPS41-208ENST00000448833 RPRMQ9NS64 109 aa5.12□□□□□ -1.59
VPS41-208ENST00000448833 XCL2Q9UBD3 114 aa5.12□□□□□ -1.59
VPS41-208ENST00000448833 APLNQ9ULZ1 77 aa5.12□□□□□ -1.59
VPS41-208ENST00000448833 SLC45A2Q9UMX9 530 aa5.12□□□□□ -1.59
VPS41-208ENST00000448833 HLA-DRB4X5D2U9 266 aa5.12□□□□□ -1.59
VPS41-208ENST00000448833 X6R8D5 127 aa5.12□□□□□ -1.59
VPS41-208ENST00000448833 KMT2AQ03164 3969 aa5.11□□□□□ -1.59
VPS41-208ENST00000448833 DEDDO75618 318 aa5.11□□□□□ -1.59
VPS41-208ENST00000448833 NXPH3O95157 252 aa5.11□□□□□ -1.59
VPS41-208ENST00000448833 IFNA21P01568 189 aa5.11□□□□□ -1.59
VPS41-208ENST00000448833 AMBPP02760 352 aa5.11□□□□□ -1.59
VPS41-208ENST00000448833 C4BPBP20851 252 aa5.11□□□□□ -1.59
VPS41-208ENST00000448833 GALR1P47211 349 aa5.11□□□□□ -1.59
VPS41-208ENST00000448833 UBE2MP61081 183 aaKnown RBP5.11□□□□□ -1.59
VPS41-208ENST00000448833 B2MP61769 119 aa5.11□□□□□ -1.59
VPS41-208ENST00000448833 PYDC2Q56P42 97 aa5.11□□□□□ -1.59
VPS41-208ENST00000448833 ZNF705AQ6ZN79 300 aaPredicted RBP5.11□□□□□ -1.59
VPS41-208ENST00000448833 Q6ZTC4 211 aa5.11□□□□□ -1.59
VPS41-208ENST00000448833 TMED4Q7Z7H5 227 aa5.11□□□□□ -1.59
VPS41-208ENST00000448833 TMEM170AQ8WVE7 144 aa5.11□□□□□ -1.59
VPS41-208ENST00000448833 LINC00052Q96N35 136 aa5.11□□□□□ -1.59
VPS41-208ENST00000448833 SOSTQ9BQB4 213 aa5.11□□□□□ -1.59
VPS41-208ENST00000448833 SLIRPQ9GZT3 109 aaKnown RBP5.11□□□□□ -1.59
VPS41-208ENST00000448833 SAV1Q9H4B6 383 aaPredicted RBP5.11□□□□□ -1.59
VPS41-208ENST00000448833 CLEC5AQ9NY25 188 aa5.11□□□□□ -1.59
VPS41-208ENST00000448833 GOLT1BQ9Y3E0 138 aa5.11□□□□□ -1.59
VPS41-208ENST00000448833 RFNGQ9Y644 331 aa5.11□□□□□ -1.59
VPS41-208ENST00000448833 FRAS1Q86XX4 4008 aa5.1□□□□□ -1.59
VPS41-208ENST00000448833 ZNF705FA8MVS1 300 aaPredicted RBP5.1□□□□□ -1.59
VPS41-208ENST00000448833 SYNGR2O43760 224 aa5.1□□□□□ -1.59
VPS41-208ENST00000448833 PITX3O75364 302 aa5.1□□□□□ -1.59
VPS41-208ENST00000448833 ZNF705DP0CH99 300 aaPredicted RBP5.1□□□□□ -1.59
VPS41-208ENST00000448833 ZNF705BP0CI00 300 aaPredicted RBP5.1□□□□□ -1.59
VPS41-208ENST00000448833 PAX9P55771 341 aa5.1□□□□□ -1.59
VPS41-208ENST00000448833 LYZP61626 148 aa5.1□□□□□ -1.59
VPS41-208ENST00000448833 PSG9Q00887 426 aa5.1□□□□□ -1.59
VPS41-208ENST00000448833 OXA1LQ15070 435 aa5.1□□□□□ -1.59
VPS41-208ENST00000448833 POM121L12Q8N7R1 296 aa5.1□□□□□ -1.59
VPS41-208ENST00000448833 THAP8Q8NA92 274 aa5.1□□□□□ -1.59
VPS41-208ENST00000448833 BPIFCQ8NFQ6 507 aa5.1□□□□□ -1.59
VPS41-208ENST00000448833 OR1B1Q8NGR6 318 aa5.1□□□□□ -1.59
VPS41-208ENST00000448833 H3BMQ9 156 aa5.09□□□□□ -1.59
VPS41-208ENST00000448833 WRBO00258 174 aa5.09□□□□□ -1.59
VPS41-208ENST00000448833 DUSP14O95147 198 aaKnown RBP5.09□□□□□ -1.59
VPS41-208ENST00000448833 HBE1P02100 147 aa5.09□□□□□ -1.59
VPS41-208ENST00000448833 INPP1P49441 399 aa5.09□□□□□ -1.59
VPS41-208ENST00000448833 SELENOTP62341 195 aa5.09□□□□□ -1.59
VPS41-208ENST00000448833 ZNF90Q03938 601 aa5.09□□□□□ -1.59
VPS41-208ENST00000448833 ZNF79Q15937 498 aa5.09□□□□□ -1.59
VPS41-208ENST00000448833 C12orf74Q32Q52 190 aa5.09□□□□□ -1.59
VPS41-208ENST00000448833 CNPY1Q3B7I2 92 aa5.09□□□□□ -1.59
VPS41-208ENST00000448833 SOHLH1Q5JUK2 328 aa5.09□□□□□ -1.59
VPS41-208ENST00000448833 SPANXN2Q5MJ10 180 aa5.09□□□□□ -1.59
VPS41-208ENST00000448833 OR4B1Q8NGF8 309 aa5.09□□□□□ -1.59
VPS41-208ENST00000448833 C16orf92Q96LL3 132 aa5.09□□□□□ -1.59
VPS41-208ENST00000448833 C7orf50Q9BRJ6 194 aaKnown RBP5.09□□□□□ -1.59
VPS41-208ENST00000448833 NIPSNAP3BQ9BS92 247 aa5.09□□□□□ -1.59
VPS41-208ENST00000448833 TMEM208Q9BTX3 173 aa5.09□□□□□ -1.59
VPS41-208ENST00000448833 TMEM147Q9BVK8 224 aa5.09□□□□□ -1.59
VPS41-208ENST00000448833 PAIP2BQ9ULR5 123 aaKnown RBP5.09□□□□□ -1.59
VPS41-208ENST00000448833 STRAPQ9Y3F4 350 aaKnown RBP5.09□□□□□ -1.59
VPS41-208ENST00000448833 IGKV1D-37A0A075B6S9 117 aa5.08□□□□□ -1.6
VPS41-208ENST00000448833 NAP1L6A6NFF2 107 aa5.08□□□□□ -1.6
VPS41-208ENST00000448833 ZNF98A6NK75 572 aa5.08□□□□□ -1.6
VPS41-208ENST00000448833 CENPXA8MT69 81 aa5.08□□□□□ -1.6
VPS41-208ENST00000448833 SFT2D2O95562 160 aa5.08□□□□□ -1.6
VPS41-208ENST00000448833 IGKV3-20P01619 116 aa5.08□□□□□ -1.6
VPS41-208ENST00000448833 RAP2BP61225 183 aa5.08□□□□□ -1.6
VPS41-208ENST00000448833 AKR1C1Q04828 323 aa5.08□□□□□ -1.6
VPS41-208ENST00000448833 OR2F1Q13607 317 aa5.08□□□□□ -1.6
VPS41-208ENST00000448833 RRN3P1Q2M238 152 aa5.08□□□□□ -1.6
VPS41-208ENST00000448833 RNF212Q495C1 297 aa5.08□□□□□ -1.6
VPS41-208ENST00000448833 SPANXN5Q5MJ07 72 aa5.08□□□□□ -1.6
VPS41-208ENST00000448833 ANAPC16Q96DE5 110 aa5.08□□□□□ -1.6
VPS41-208ENST00000448833 RSG1Q9BU20 258 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms