RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 GOLT1AQ6ZVE7 132 aa6.99□□□□□ -1.29
USP40-203ENST00000427112 SLC25A2Q9BXI2 301 aa6.99□□□□□ -1.29
USP40-203ENST00000427112 WNK1Q9H4A3 2382 aa6.99□□□□□ -1.29
USP40-203ENST00000427112 M0R3E3 92 aa6.99□□□□□ -1.29
USP40-203ENST00000427112 OCIAD2Q56VL3 154 aa6.99□□□□□ -1.29
USP40-203ENST00000427112 OR4B1Q8NGF8 309 aa6.99□□□□□ -1.29
USP40-203ENST00000427112 OR1L4Q8NGR5 311 aa6.99□□□□□ -1.29
USP40-203ENST00000427112 CST9LQ9H4G1 147 aa6.99□□□□□ -1.29
USP40-203ENST00000427112 BSNQ9UPA5 3926 aa6.99□□□□□ -1.29
USP40-203ENST00000427112 H3BUT2 72 aa6.98□□□□□ -1.29
USP40-203ENST00000427112 BSPH1Q075Z2 132 aa6.98□□□□□ -1.29
USP40-203ENST00000427112 SPACA3Q8IXA5 215 aa6.98□□□□□ -1.29
USP40-203ENST00000427112 PNKDQ8N490 385 aa6.98□□□□□ -1.29
USP40-203ENST00000427112 C18orf32Q8TCD1 76 aa6.98□□□□□ -1.29
USP40-203ENST00000427112 TNFRSF19Q9NS68 423 aa6.98□□□□□ -1.29
USP40-203ENST00000427112 TMEM14BQ9NUH8 114 aa6.98□□□□□ -1.29
USP40-203ENST00000427112 PIGBOS1A0A0B4J2F0 54 aa6.98□□□□□ -1.29
USP40-203ENST00000427112 SPRY2O43597 315 aa6.98□□□□□ -1.29
USP40-203ENST00000427112 IGLV2-8P01709 118 aa6.98□□□□□ -1.29
USP40-203ENST00000427112 PPIFP30405 207 aaKnown RBP6.98□□□□□ -1.29
USP40-203ENST00000427112 PRR20EP86478 221 aa6.98□□□□□ -1.29
USP40-203ENST00000427112 PRR20CP86479 221 aa6.98□□□□□ -1.29
USP40-203ENST00000427112 PRR20DP86480 221 aa6.98□□□□□ -1.29
USP40-203ENST00000427112 PRR20BP86481 221 aa6.98□□□□□ -1.29
USP40-203ENST00000427112 PRR20AP86496 221 aa6.98□□□□□ -1.29
USP40-203ENST00000427112 ANXA2RQ3ZCQ2 193 aa6.98□□□□□ -1.29
USP40-203ENST00000427112 TMEM200BQ69YZ2 307 aa6.98□□□□□ -1.29
USP40-203ENST00000427112 DAZAP1Q96EP5 407 aaKnown RBP6.98□□□□□ -1.29
USP40-203ENST00000427112 KCNS1Q96KK3 526 aa6.98□□□□□ -1.29
USP40-203ENST00000427112 FAM215AQ9Y5M1 114 aa6.98□□□□□ -1.29
USP40-203ENST00000427112 HIVEP3Q5T1R4 2406 aa6.98□□□□□ -1.29
USP40-203ENST00000427112 KIR2DL5BA0A0G2JN68 375 aa6.98□□□□□ -1.29
USP40-203ENST00000427112 KIR2DL5BA0A0G2JPC4 375 aa6.98□□□□□ -1.29
USP40-203ENST00000427112 ITGB1BP1O14713 200 aa6.98□□□□□ -1.29
USP40-203ENST00000427112 AMY1AP04745 511 aa6.98□□□□□ -1.29
USP40-203ENST00000427112 OR5AL1P0C617 328 aa6.98□□□□□ -1.29
USP40-203ENST00000427112 TAS2R45P59539 299 aa6.98□□□□□ -1.29
USP40-203ENST00000427112 CKS1BP61024 79 aa6.98□□□□□ -1.29
USP40-203ENST00000427112 CX3CL1P78423 397 aa6.98□□□□□ -1.29
USP40-203ENST00000427112 PDPNQ86YL7 162 aa6.98□□□□□ -1.29
USP40-203ENST00000427112 KIR2DL5AQ8N109 375 aa6.98□□□□□ -1.29
USP40-203ENST00000427112 ZADH2Q8N4Q0 377 aa6.98□□□□□ -1.29
USP40-203ENST00000427112 GAGE12BA1L429 117 aa6.97□□□□□ -1.29
USP40-203ENST00000427112 H3BVH4 76 aa6.97□□□□□ -1.29
USP40-203ENST00000427112 PEX7O00628 323 aa6.97□□□□□ -1.29
USP40-203ENST00000427112 MPDU1O75352 247 aa6.97□□□□□ -1.29
USP40-203ENST00000427112 FCN3O75636 299 aa6.97□□□□□ -1.29
USP40-203ENST00000427112 IGLL1P15814 213 aa6.97□□□□□ -1.29
USP40-203ENST00000427112 YPEL3P61236 119 aaPredicted RBP6.97□□□□□ -1.29
USP40-203ENST00000427112 CD69Q07108 199 aa6.97□□□□□ -1.29
USP40-203ENST00000427112 MTURNQ8N3F0 131 aa6.97□□□□□ -1.29
USP40-203ENST00000427112 OR8A1Q8NGG7 326 aa6.97□□□□□ -1.29
USP40-203ENST00000427112 LINC01560Q8TB33 94 aa6.97□□□□□ -1.29
USP40-203ENST00000427112 DDB2Q92466 427 aa6.97□□□□□ -1.29
USP40-203ENST00000427112 TMEM167BQ9NRX6 74 aa6.97□□□□□ -1.29
USP40-203ENST00000427112 NACAE9PAV3 2078 aa6.97□□□□□ -1.29
USP40-203ENST00000427112 USP9XQ93008 2570 aaPredicted RBP6.97□□□□□ -1.29
USP40-203ENST00000427112 A0A087X0K7 114 aa6.97□□□□□ -1.29
USP40-203ENST00000427112 CD40P25942 277 aa6.97□□□□□ -1.29
USP40-203ENST00000427112 MPV17L2Q567V2 206 aa6.97□□□□□ -1.29
USP40-203ENST00000427112 OR8B3Q8NGG8 313 aa6.97□□□□□ -1.29
USP40-203ENST00000427112 THYN1Q9P016 225 aa6.97□□□□□ -1.29
USP40-203ENST00000427112 PRNDQ9UKY0 176 aa6.97□□□□□ -1.29
USP40-203ENST00000427112 ACACBO00763 2458 aa6.97□□□□□ -1.29
USP40-203ENST00000427112 TNRC6BQ9UPQ9 1833 aaKnown RBP6.97□□□□□ -1.29
USP40-203ENST00000427112 A0A1W2PPI3 338 aa6.97□□□□□ -1.29
USP40-203ENST00000427112 SMKR1H3BMG3 65 aa6.97□□□□□ -1.29
USP40-203ENST00000427112 SAP30O75446 220 aa6.97□□□□□ -1.29
USP40-203ENST00000427112 PAFAH1B2P68402 229 aa6.97□□□□□ -1.29
USP40-203ENST00000427112 PRCDQ00LT1 54 aa6.97□□□□□ -1.29
USP40-203ENST00000427112 C1orf174Q8IYL3 243 aa6.97□□□□□ -1.29
USP40-203ENST00000427112 ZNF714Q96N38 554 aa6.97□□□□□ -1.29
USP40-203ENST00000427112 OR2T8A6NH00 312 aa6.96□□□□□ -1.29
USP40-203ENST00000427112 C22orf46C9J442 243 aa6.96□□□□□ -1.29
USP40-203ENST00000427112 COL8A1P27658 744 aa6.96□□□□□ -1.29
USP40-203ENST00000427112 OR1L8Q8NGR8 309 aa6.96□□□□□ -1.29
USP40-203ENST00000427112 NKX6-3A6NJ46 265 aa6.96□□□□□ -1.3
USP40-203ENST00000427112 FAM90A27PA6NNH2 459 aa6.96□□□□□ -1.3
USP40-203ENST00000427112 FAM106CPP0CH98 169 aa6.96□□□□□ -1.3
USP40-203ENST00000427112 NMUP48645 174 aa6.96□□□□□ -1.3
USP40-203ENST00000427112 TBR1Q16650 682 aa6.96□□□□□ -1.3
USP40-203ENST00000427112 FAM106AQ4KMX7 169 aa6.96□□□□□ -1.3
USP40-203ENST00000427112 BPIFA4PQ86YQ2 179 aa6.96□□□□□ -1.3
USP40-203ENST00000427112 PRR7Q8TB68 274 aa6.96□□□□□ -1.3
USP40-203ENST00000427112 VPS13CQ709C8 3753 aa6.96□□□□□ -1.3
USP40-203ENST00000427112 A0A1B0GW15 77 aa6.96□□□□□ -1.3
USP40-203ENST00000427112 NDUFB8O95169 186 aa6.96□□□□□ -1.3
USP40-203ENST00000427112 NBEAP1P0C6P0 100 aa6.96□□□□□ -1.3
USP40-203ENST00000427112 GCSHP23434 173 aa6.96□□□□□ -1.3
USP40-203ENST00000427112 GRNP28799 593 aaKnown RBP6.96□□□□□ -1.3
USP40-203ENST00000427112 TEX43Q6ZNM6 134 aa6.96□□□□□ -1.3
USP40-203ENST00000427112 Q8N976 141 aa6.96□□□□□ -1.3
USP40-203ENST00000427112 SRSF12Q8WXF0 261 aaKnown RBP6.96□□□□□ -1.3
USP40-203ENST00000427112 RAB1CQ92928 201 aa6.96□□□□□ -1.3
USP40-203ENST00000427112 FAM167A-AS1Q96KT0 104 aa6.96□□□□□ -1.3
USP40-203ENST00000427112 PLSCR4Q9NRQ2 329 aa6.96□□□□□ -1.3
USP40-203ENST00000427112 ONECUT1Q9UBC0 465 aa6.96□□□□□ -1.3
USP40-203ENST00000427112 FOXA2Q9Y261 457 aaPredicted RBP6.96□□□□□ -1.3
USP40-203ENST00000427112 H0YJW9 148 aa6.95□□□□□ -1.3
USP40-203ENST00000427112 P01737 135 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms