RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 A0A1W2PRX2 142 aa10.96□□□□□ -0.65
SKA1-202ENST00000398452 ZNF320A2RRD8 509 aa10.96□□□□□ -0.65
SKA1-202ENST00000398452 LINC01619G3V211 115 aa10.96□□□□□ -0.65
SKA1-202ENST00000398452 OR2C1O95371 312 aa10.96□□□□□ -0.65
SKA1-202ENST00000398452 HBE1P02100 147 aa10.96□□□□□ -0.65
SKA1-202ENST00000398452 ADMP35318 185 aa10.96□□□□□ -0.65
SKA1-202ENST00000398452 KIAA0141Q14154 515 aaPredicted RBP10.96□□□□□ -0.65
SKA1-202ENST00000398452 FAM78BQ5VT40 261 aa10.96□□□□□ -0.65
SKA1-202ENST00000398452 SAT2Q96F10 170 aaPredicted RBP10.96□□□□□ -0.65
SKA1-202ENST00000398452 CITED2Q99967 270 aaPredicted RBP10.96□□□□□ -0.65
SKA1-202ENST00000398452 RPRMQ9NS64 109 aa10.96□□□□□ -0.65
SKA1-202ENST00000398452 RABAC1Q9UI14 185 aa10.96□□□□□ -0.65
SKA1-202ENST00000398452 RFNGQ9Y644 331 aa10.96□□□□□ -0.65
SKA1-202ENST00000398452 CTXND1A0A1B0GTU2 59 aa10.95□□□□□ -0.66
SKA1-202ENST00000398452 RGS13O14921 159 aa10.95□□□□□ -0.66
SKA1-202ENST00000398452 TRBV12-3P01733 135 aa10.95□□□□□ -0.66
SKA1-202ENST00000398452 H2AFB1P0C5Y9 115 aa10.95□□□□□ -0.66
SKA1-202ENST00000398452 BMI1P35226 326 aa10.95□□□□□ -0.66
SKA1-202ENST00000398452 PLP1P60201 277 aa10.95□□□□□ -0.66
SKA1-202ENST00000398452 IFITM2Q01629 132 aa10.95□□□□□ -0.66
SKA1-202ENST00000398452 AWAT1Q58HT5 328 aa10.95□□□□□ -0.66
SKA1-202ENST00000398452 TCTEX1D4Q5JR98 221 aa10.95□□□□□ -0.66
SKA1-202ENST00000398452 TOMM20LQ6UXN7 152 aa10.95□□□□□ -0.66
SKA1-202ENST00000398452 OR11H1Q8NG94 326 aa10.95□□□□□ -0.66
SKA1-202ENST00000398452 OR1N2Q8NGR9 330 aa10.95□□□□□ -0.66
SKA1-202ENST00000398452 WIPF2Q8TF74 440 aaPredicted RBP10.95□□□□□ -0.66
SKA1-202ENST00000398452 IGHV4OR15-8A0A075B7B6 117 aa10.94□□□□□ -0.66
SKA1-202ENST00000398452 A0A087WW49 117 aa10.94□□□□□ -0.66
SKA1-202ENST00000398452 WI2-2373I1.2A0A1W2PRP0 233 aa10.94□□□□□ -0.66
SKA1-202ENST00000398452 I3L521 148 aa10.94□□□□□ -0.66
SKA1-202ENST00000398452 NPPCP23582 126 aa10.94□□□□□ -0.66
SKA1-202ENST00000398452 LINC00305Q7Z4B0 112 aa10.94□□□□□ -0.66
SKA1-202ENST00000398452 NDUFA11Q86Y39 141 aa10.94□□□□□ -0.66
SKA1-202ENST00000398452 GPHB5Q86YW7 130 aa10.94□□□□□ -0.66
SKA1-202ENST00000398452 IQCF2Q8IXL9 164 aa10.94□□□□□ -0.66
SKA1-202ENST00000398452 SFT2D1Q8WV19 159 aa10.94□□□□□ -0.66
SKA1-202ENST00000398452 GRAMD2BQ96HH9 432 aa10.94□□□□□ -0.66
SKA1-202ENST00000398452 VSIRQ9H7M9 311 aa10.94□□□□□ -0.66
SKA1-202ENST00000398452 SLC25A22Q9H936 323 aa10.94□□□□□ -0.66
SKA1-202ENST00000398452 TECRQ9NZ01 308 aaKnown RBP10.94□□□□□ -0.66
SKA1-202ENST00000398452 FUT9Q9Y231 359 aa10.94□□□□□ -0.66
SKA1-202ENST00000398452 UFC1Q9Y3C8 167 aa10.94□□□□□ -0.66
SKA1-202ENST00000398452 A0A1W2PS18 150 aa10.93□□□□□ -0.66
SKA1-202ENST00000398452 M0QZ24 198 aa10.93□□□□□ -0.66
SKA1-202ENST00000398452 NSUN5P1Q3KNT7 163 aa10.93□□□□□ -0.66
SKA1-202ENST00000398452 KHDC3LQ587J8 217 aa10.93□□□□□ -0.66
SKA1-202ENST00000398452 GCSAMLQ5JQS6 135 aa10.93□□□□□ -0.66
SKA1-202ENST00000398452 C8orf86Q6ZUL3 223 aa10.93□□□□□ -0.66
SKA1-202ENST00000398452 C3orf56Q8N813 242 aa10.93□□□□□ -0.66
SKA1-202ENST00000398452 STXBP6Q8NFX7 210 aa10.93□□□□□ -0.66
SKA1-202ENST00000398452 RAB24Q969Q5 203 aa10.93□□□□□ -0.66
SKA1-202ENST00000398452 TMEM231Q9H6L2 316 aa10.93□□□□□ -0.66
SKA1-202ENST00000398452 PEMTQ9UBM1 199 aa10.93□□□□□ -0.66
SKA1-202ENST00000398452 MAP1LC3B2A6NCE7 125 aa10.92□□□□□ -0.66
SKA1-202ENST00000398452 OR7C2O60412 319 aa10.92□□□□□ -0.66
SKA1-202ENST00000398452 C8orf88P0DMB2 117 aa10.92□□□□□ -0.66
SKA1-202ENST00000398452 HOXD3P31249 432 aaPredicted RBP10.92□□□□□ -0.66
SKA1-202ENST00000398452 DEFB136Q30KP8 78 aa10.92□□□□□ -0.66
SKA1-202ENST00000398452 LCN15Q6UWW0 184 aa10.92□□□□□ -0.66
SKA1-202ENST00000398452 C1QL4Q86Z23 238 aa10.92□□□□□ -0.66
SKA1-202ENST00000398452 RPP25LQ8N5L8 163 aaKnown RBP10.92□□□□□ -0.66
SKA1-202ENST00000398452 TMEM190Q8WZ59 177 aa10.92□□□□□ -0.66
SKA1-202ENST00000398452 RCC1LQ96I51 464 aaKnown RBP10.92□□□□□ -0.66
SKA1-202ENST00000398452 SLC25A39Q9BZJ4 359 aaPredicted RBP10.92□□□□□ -0.66
SKA1-202ENST00000398452 MAP1LC3BQ9GZQ8 125 aa10.92□□□□□ -0.66
SKA1-202ENST00000398452 SEC14L6B5MCN3 397 aa10.91□□□□□ -0.66
SKA1-202ENST00000398452 CCL24O00175 119 aa10.91□□□□□ -0.66
SKA1-202ENST00000398452 CXorf1O96002 111 aa10.91□□□□□ -0.66
SKA1-202ENST00000398452 PF4P02776 101 aa10.91□□□□□ -0.66
SKA1-202ENST00000398452 FHITP49789 147 aa10.91□□□□□ -0.66
SKA1-202ENST00000398452 USF2Q15853 346 aaPredicted RBP10.91□□□□□ -0.66
SKA1-202ENST00000398452 CLLU1Q5K131 121 aa10.91□□□□□ -0.66
SKA1-202ENST00000398452 PQLC2Q6ZP29 291 aa10.91□□□□□ -0.66
SKA1-202ENST00000398452 C18orf65Q6ZTR6 163 aa10.91□□□□□ -0.66
SKA1-202ENST00000398452 TMEM37Q8WXS4 190 aa10.91□□□□□ -0.66
SKA1-202ENST00000398452 UHRF2Q96PU4 802 aa10.91□□□□□ -0.66
SKA1-202ENST00000398452 HRH4Q9H3N8 390 aa10.91□□□□□ -0.66
SKA1-202ENST00000398452 SEPSECSQ9HD40 501 aaKnown RBP10.91□□□□□ -0.66
SKA1-202ENST00000398452 DAZ1Q9NQZ3 744 aaKnown RBP10.91□□□□□ -0.66
SKA1-202ENST00000398452 MRPL27Q9P0M9 148 aaKnown RBP10.91□□□□□ -0.66
SKA1-202ENST00000398452 TENM1Q9UKZ4 2725 aa10.9□□□□□ -0.66
SKA1-202ENST00000398452 IGHV3OR16-8A0A075B7F1 116 aa10.9□□□□□ -0.66
SKA1-202ENST00000398452 A0A1B0GV50 99 aa10.9□□□□□ -0.66
SKA1-202ENST00000398452 K7EMT4 169 aa10.9□□□□□ -0.66
SKA1-202ENST00000398452 IFNA1P01562 189 aa10.9□□□□□ -0.66
SKA1-202ENST00000398452 MYCNOSP40205 109 aa10.9□□□□□ -0.66
SKA1-202ENST00000398452 SYNJ2BPP57105 145 aa10.9□□□□□ -0.66
SKA1-202ENST00000398452 IL34Q6ZMJ4 242 aa10.9□□□□□ -0.66
SKA1-202ENST00000398452 MIR17HGQ75NE6 70 aa10.9□□□□□ -0.66
SKA1-202ENST00000398452 REC114Q7Z4M0 266 aa10.9□□□□□ -0.66
SKA1-202ENST00000398452 OR8I2Q8N0Y5 310 aa10.9□□□□□ -0.66
SKA1-202ENST00000398452 OR4F17Q8NGA8 305 aa10.9□□□□□ -0.66
SKA1-202ENST00000398452 MBD3L1Q8WWY6 194 aa10.9□□□□□ -0.66
SKA1-202ENST00000398452 GPR82Q96P67 336 aa10.9□□□□□ -0.66
SKA1-202ENST00000398452 OR4F4Q96R69 305 aa10.9□□□□□ -0.66
SKA1-202ENST00000398452 SHANK2-AS3Q9BTD1 123 aa10.9□□□□□ -0.66
SKA1-202ENST00000398452 H3BRN7 92 aa10.89□□□□□ -0.67
SKA1-202ENST00000398452 LGALS9O00182 355 aa10.89□□□□□ -0.67
SKA1-202ENST00000398452 HMGB3O15347 200 aaKnown RBP10.89□□□□□ -0.67
SKA1-202ENST00000398452 ZNF207O43670 478 aaKnown RBP10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms