RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 IGKV2D-40P01614 121 aaPredicted RBP13.05□□□□□ -0.32
COL17A1-202ENST00000369733 TDGF1P13385 188 aa13.05□□□□□ -0.32
COL17A1-202ENST00000369733 CSRP1P21291 193 aaKnown RBP13.05□□□□□ -0.32
COL17A1-202ENST00000369733 YPEL3P61236 119 aaPredicted RBP13.05□□□□□ -0.32
COL17A1-202ENST00000369733 KIR3DL3Q8N743 410 aa13.05□□□□□ -0.32
COL17A1-202ENST00000369733 NLRC5Q86WI3 1866 aa13.05□□□□□ -0.32
COL17A1-202ENST00000369733 TMEM262E9PQX1 116 aa13.05□□□□□ -0.32
COL17A1-202ENST00000369733 LRRK1Q38SD2 2015 aa13.05□□□□□ -0.32
COL17A1-202ENST00000369733 PHF3Q92576 2039 aaKnown RBP13.05□□□□□ -0.32
COL17A1-202ENST00000369733 PAX1P15863 534 aa13.04□□□□□ -0.32
COL17A1-202ENST00000369733 LINC01559Q495D7 138 aa13.04□□□□□ -0.32
COL17A1-202ENST00000369733 CLEC2AQ6UVW9 174 aa13.04□□□□□ -0.32
COL17A1-202ENST00000369733 GAGE1Q13065 139 aa13.04□□□□□ -0.32
COL17A1-202ENST00000369733 LAGE3Q14657 143 aa13.04□□□□□ -0.32
COL17A1-202ENST00000369733 GTSF1LQ9H1H1 148 aa13.04□□□□□ -0.32
COL17A1-202ENST00000369733 MLNRO43193 412 aa13.04□□□□□ -0.32
COL17A1-202ENST00000369733 OCIAD2Q56VL3 154 aa13.04□□□□□ -0.32
COL17A1-202ENST00000369733 CST9LQ9H4G1 147 aa13.04□□□□□ -0.32
COL17A1-202ENST00000369733 CYSLTR1Q9Y271 337 aa13.04□□□□□ -0.32
COL17A1-202ENST00000369733 TCF20Q9UGU0 1960 aaKnown RBP13.04□□□□□ -0.32
COL17A1-202ENST00000369733 ZNF883P0CG24 379 aa13.04□□□□□ -0.32
COL17A1-202ENST00000369733 CD24P25063 80 aa13.04□□□□□ -0.32
COL17A1-202ENST00000369733 DUX5Q96PT3 197 aa13.04□□□□□ -0.32
COL17A1-202ENST00000369733 CITED1Q99966 193 aa13.04□□□□□ -0.32
COL17A1-202ENST00000369733 RRN3P1Q2M238 152 aa13.03□□□□□ -0.32
COL17A1-202ENST00000369733 FNDC10F2Z333 226 aa13.03□□□□□ -0.32
COL17A1-202ENST00000369733 TMEM167AQ8TBQ9 72 aa13.03□□□□□ -0.32
COL17A1-202ENST00000369733 MLANAQ16655 118 aa13.03□□□□□ -0.32
COL17A1-202ENST00000369733 TMEM190Q8WZ59 177 aa13.03□□□□□ -0.32
COL17A1-202ENST00000369733 TRAV8-1A0A0A6YYK1 113 aa13.03□□□□□ -0.32
COL17A1-202ENST00000369733 TOMM40O96008 361 aa13.03□□□□□ -0.32
COL17A1-202ENST00000369733 IGKV1-39P01597 117 aa13.03□□□□□ -0.32
COL17A1-202ENST00000369733 IGKV1D-39P04432 117 aa13.03□□□□□ -0.32
COL17A1-202ENST00000369733 Q0VFX4 171 aa13.02□□□□□ -0.32
COL17A1-202ENST00000369733 FAM57AQ8TBR7 257 aa13.02□□□□□ -0.32
COL17A1-202ENST00000369733 MBNL3Q9NUK0 354 aaKnown RBP13.02□□□□□ -0.32
COL17A1-202ENST00000369733 IGKV3OR2-268A0A0C4DH90 116 aa13.02□□□□□ -0.33
COL17A1-202ENST00000369733 RNASE2P10153 161 aaKnown RBP13.02□□□□□ -0.33
COL17A1-202ENST00000369733 MOB4Q9Y3A3 225 aa13.02□□□□□ -0.33
COL17A1-202ENST00000369733 ESPL1Q14674 2120 aa13.02□□□□□ -0.33
COL17A1-202ENST00000369733 TRAV2A0A0B4J234 112 aa13.02□□□□□ -0.33
COL17A1-202ENST00000369733 NTN3O00634 580 aaPredicted RBP13.02□□□□□ -0.33
COL17A1-202ENST00000369733 CD300EQ496F6 205 aaPredicted RBP13.02□□□□□ -0.33
COL17A1-202ENST00000369733 ZNF114Q8NC26 417 aa13.02□□□□□ -0.33
COL17A1-202ENST00000369733 OR13C6PQ8NH95 151 aa13.02□□□□□ -0.33
COL17A1-202ENST00000369733 PLXNA4Q9HCM2 1894 aa13.02□□□□□ -0.33
COL17A1-202ENST00000369733 KLF17Q5JT82 389 aaPredicted RBP13.01□□□□□ -0.33
COL17A1-202ENST00000369733 LSM4Q9Y4Z0 139 aaKnown RBP13.01□□□□□ -0.33
COL17A1-202ENST00000369733 H0YJW9 148 aa13.01□□□□□ -0.33
COL17A1-202ENST00000369733 TIMM23O14925 209 aa13.01□□□□□ -0.33
COL17A1-202ENST00000369733 TMEM95Q3KNT9 176 aa13.01□□□□□ -0.33
COL17A1-202ENST00000369733 H3BRM9 83 aa13.01□□□□□ -0.33
COL17A1-202ENST00000369733 SMAD7O15105 426 aaKnown RBP13.01□□□□□ -0.33
COL17A1-202ENST00000369733 SH2D1AO60880 128 aa13.01□□□□□ -0.33
COL17A1-202ENST00000369733 IFI27P40305 119 aaPredicted RBP13.01□□□□□ -0.33
COL17A1-202ENST00000369733 CKS1BP61024 79 aa13.01□□□□□ -0.33
COL17A1-202ENST00000369733 GLMPQ8WWB7 406 aa13.01□□□□□ -0.33
COL17A1-202ENST00000369733 ASXL3Q9C0F0 2248 aa13.01□□□□□ -0.33
COL17A1-202ENST00000369733 TRAV21A0A0B4J279 112 aa13□□□□□ -0.33
COL17A1-202ENST00000369733 ETV2O00321 342 aaPredicted RBP13□□□□□ -0.33
COL17A1-202ENST00000369733 TMEM200BQ69YZ2 307 aa13□□□□□ -0.33
COL17A1-202ENST00000369733 IGKV1D-17A0A075B6S4 117 aa13□□□□□ -0.33
COL17A1-202ENST00000369733 TRAV8-4A0A0B4J246 113 aa13□□□□□ -0.33
COL17A1-202ENST00000369733 HAPLN4Q86UW8 402 aa13□□□□□ -0.33
COL17A1-202ENST00000369733 GFRA4Q9GZZ7 299 aa13□□□□□ -0.33
COL17A1-202ENST00000369733 V9GYV3 84 aa13□□□□□ -0.33
COL17A1-202ENST00000369733 FANCMQ8IYD8 2048 aa13□□□□□ -0.33
COL17A1-202ENST00000369733 A0A1B0GWJ7 208 aa13□□□□□ -0.33
COL17A1-202ENST00000369733 PAX2Q02962 417 aa13□□□□□ -0.33
COL17A1-202ENST00000369733 PSG3Q16557 428 aa13□□□□□ -0.33
COL17A1-202ENST00000369733 TNFRSF14Q92956 283 aa12.99□□□□□ -0.33
COL17A1-202ENST00000369733 PLXND1Q9Y4D7 1925 aa12.99□□□□□ -0.33
COL17A1-202ENST00000369733 FAM231BA6NCW3 169 aa12.99□□□□□ -0.33
COL17A1-202ENST00000369733 TEX43Q6ZNM6 134 aa12.99□□□□□ -0.33
COL17A1-202ENST00000369733 Q86TA4 180 aa12.99□□□□□ -0.33
COL17A1-202ENST00000369733 PIMREGQ9BSJ6 248 aa12.99□□□□□ -0.33
COL17A1-202ENST00000369733 COLCA1Q6ZS62 124 aa12.99□□□□□ -0.33
COL17A1-202ENST00000369733 STPG4Q8N801 248 aa12.99□□□□□ -0.33
COL17A1-202ENST00000369733 CD7P09564 240 aa12.99□□□□□ -0.33
COL17A1-202ENST00000369733 RHOGP84095 191 aa12.99□□□□□ -0.33
COL17A1-202ENST00000369733 AMN1Q8IY45 258 aa12.99□□□□□ -0.33
COL17A1-202ENST00000369733 SMKR1H3BMG3 65 aa12.98□□□□□ -0.33
COL17A1-202ENST00000369733 RPL15P61313 204 aaKnown RBP12.98□□□□□ -0.33
COL17A1-202ENST00000369733 SLAQ13239 276 aa12.98□□□□□ -0.33
COL17A1-202ENST00000369733 CHAC1Q9BUX1 264 aa12.98□□□□□ -0.33
COL17A1-202ENST00000369733 ADAMTSL5Q6ZMM2 481 aa12.98□□□□□ -0.33
COL17A1-202ENST00000369733 HEATR5AQ86XA9 2040 aa12.97□□□□□ -0.33
COL17A1-202ENST00000369733 IGHV2-26A0A0B4J1V2 119 aa12.97□□□□□ -0.33
COL17A1-202ENST00000369733 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.97□□□□□ -0.33
COL17A1-202ENST00000369733 PLNP26678 52 aa12.97□□□□□ -0.33
COL17A1-202ENST00000369733 IGKV1-16P04430 117 aa12.97□□□□□ -0.33
COL17A1-202ENST00000369733 PDLIM4P50479 330 aa12.97□□□□□ -0.33
COL17A1-202ENST00000369733 ZC2HC1BQ5TFG8 222 aa12.97□□□□□ -0.33
COL17A1-202ENST00000369733 ZFAND6Q6FIF0 208 aa12.97□□□□□ -0.33
COL17A1-202ENST00000369733 PLXNA2O75051 1894 aa12.97□□□□□ -0.33
COL17A1-202ENST00000369733 IGLL1P15814 213 aa12.97□□□□□ -0.33
COL17A1-202ENST00000369733 RNF166Q96A37 237 aaPredicted RBP12.97□□□□□ -0.33
COL17A1-202ENST00000369733 PLSCR4Q9NRQ2 329 aa12.97□□□□□ -0.33
COL17A1-202ENST00000369733 IGHV1-8P0DP01 117 aa12.97□□□□□ -0.33
COL17A1-202ENST00000369733 TMEM158Q8WZ71 300 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 95 ms