RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 COL6A6A6NMZ7 2263 aa16.48■□□□□ 0.23
CCDC88B-203ENST00000359902 HLA-DQA1P01909 254 aa16.47■□□□□ 0.23
CCDC88B-203ENST00000359902 TPPP2P59282 170 aa16.47■□□□□ 0.23
CCDC88B-203ENST00000359902 HES1Q14469 280 aa16.47■□□□□ 0.23
CCDC88B-203ENST00000359902 C1orf122Q6ZSJ8 110 aa16.47■□□□□ 0.23
CCDC88B-203ENST00000359902 SMIM12Q96EX1 92 aa16.47■□□□□ 0.23
CCDC88B-203ENST00000359902 NOL4LQ96MY1 436 aaPredicted RBP16.47■□□□□ 0.23
CCDC88B-203ENST00000359902 TMEM14CQ9P0S9 112 aa16.47■□□□□ 0.23
CCDC88B-203ENST00000359902 SPTBN4Q9H254 2564 aa16.47■□□□□ 0.23
CCDC88B-203ENST00000359902 SCGB1D1O95968 90 aa16.47■□□□□ 0.23
CCDC88B-203ENST00000359902 GPR6P46095 362 aaPredicted RBP16.47■□□□□ 0.23
CCDC88B-203ENST00000359902 USF2Q15853 346 aaPredicted RBP16.47■□□□□ 0.23
CCDC88B-203ENST00000359902 C5orf64Q2M2E5 130 aa16.47■□□□□ 0.23
CCDC88B-203ENST00000359902 ZNF586Q9NXT0 402 aa16.47■□□□□ 0.23
CCDC88B-203ENST00000359902 TOMM40O96008 361 aa16.46■□□□□ 0.23
CCDC88B-203ENST00000359902 TCRAP04437 139 aa16.46■□□□□ 0.23
CCDC88B-203ENST00000359902 NUP35Q8NFH5 326 aa16.46■□□□□ 0.23
CCDC88B-203ENST00000359902 CHRDL1Q9BU40 450 aa16.46■□□□□ 0.23
CCDC88B-203ENST00000359902 A8MWP6 167 aa16.46■□□□□ 0.23
CCDC88B-203ENST00000359902 ZFP36P26651 326 aaKnown RBP16.46■□□□□ 0.23
CCDC88B-203ENST00000359902 LY6DQ14210 128 aa16.46■□□□□ 0.23
CCDC88B-203ENST00000359902 Q6ZWC4 215 aa16.46■□□□□ 0.23
CCDC88B-203ENST00000359902 VMO1Q7Z5L0 202 aa16.46■□□□□ 0.23
CCDC88B-203ENST00000359902 DYNAPQ8N1N2 210 aa16.46■□□□□ 0.23
CCDC88B-203ENST00000359902 FMC1Q96HJ9 113 aa16.46■□□□□ 0.23
CCDC88B-203ENST00000359902 ZNF331Q9NQX6 463 aaPredicted RBP16.46■□□□□ 0.23
CCDC88B-203ENST00000359902 BMPR1BO00238 502 aa16.45■□□□□ 0.22
CCDC88B-203ENST00000359902 HIST1H1EP10412 219 aaKnown RBP16.45■□□□□ 0.22
CCDC88B-203ENST00000359902 KLF17Q5JT82 389 aaPredicted RBP16.45■□□□□ 0.22
CCDC88B-203ENST00000359902 WIPF2Q8TF74 440 aaPredicted RBP16.45■□□□□ 0.22
CCDC88B-203ENST00000359902 NDUFS7O75251 213 aa16.45■□□□□ 0.22
CCDC88B-203ENST00000359902 LTAP01374 205 aa16.45■□□□□ 0.22
CCDC88B-203ENST00000359902 CDKN1AP38936 164 aa16.45■□□□□ 0.22
CCDC88B-203ENST00000359902 RASL11AQ6T310 242 aa16.45■□□□□ 0.22
CCDC88B-203ENST00000359902 TSKUQ8WUA8 353 aa16.45■□□□□ 0.22
CCDC88B-203ENST00000359902 TMEM68Q96MH6 324 aa16.45■□□□□ 0.22
CCDC88B-203ENST00000359902 RBM14Q96PK6 669 aaKnown RBP16.45■□□□□ 0.22
CCDC88B-203ENST00000359902 NAGKQ9UJ70 344 aa16.45■□□□□ 0.22
CCDC88B-203ENST00000359902 CD33P20138 364 aa16.44■□□□□ 0.22
CCDC88B-203ENST00000359902 OR10J3Q5JRS4 329 aa16.44■□□□□ 0.22
CCDC88B-203ENST00000359902 OTORQ9NRC9 128 aa16.44■□□□□ 0.22
CCDC88B-203ENST00000359902 APCSP02743 223 aa16.44■□□□□ 0.22
CCDC88B-203ENST00000359902 LINC00322Q6ZN03 302 aaPredicted RBP16.44■□□□□ 0.22
CCDC88B-203ENST00000359902 KIR3DL3Q8N743 410 aa16.44■□□□□ 0.22
CCDC88B-203ENST00000359902 ZNF562Q6V9R5 426 aa16.43■□□□□ 0.22
CCDC88B-203ENST00000359902 NEU1Q99519 415 aa16.43■□□□□ 0.22
CCDC88B-203ENST00000359902 SHANK2-AS3Q9BTD1 123 aa16.43■□□□□ 0.22
CCDC88B-203ENST00000359902 NDUFAF3Q9BU61 184 aa16.43■□□□□ 0.22
CCDC88B-203ENST00000359902 SRIP30626 198 aa16.42■□□□□ 0.22
CCDC88B-203ENST00000359902 SLAQ13239 276 aa16.42■□□□□ 0.22
CCDC88B-203ENST00000359902 GDF5OSQ5U4N7 250 aa16.42■□□□□ 0.22
CCDC88B-203ENST00000359902 CCDC144NLQ6NUI1 221 aa16.42■□□□□ 0.22
CCDC88B-203ENST00000359902 ZNF491Q8N8L2 437 aa16.42■□□□□ 0.22
CCDC88B-203ENST00000359902 HSPB9Q9BQS6 159 aa16.42■□□□□ 0.22
CCDC88B-203ENST00000359902 A6NNC1 897 aa16.42■□□□□ 0.22
CCDC88B-203ENST00000359902 HIGD1CA8MV81 97 aa16.42■□□□□ 0.22
CCDC88B-203ENST00000359902 HOXB4P17483 251 aaPredicted RBP16.42■□□□□ 0.22
CCDC88B-203ENST00000359902 BRS3P32247 399 aa16.42■□□□□ 0.22
CCDC88B-203ENST00000359902 EXOC3-AS1Q8N2X6 119 aa16.42■□□□□ 0.22
CCDC88B-203ENST00000359902 FANCD2OSQ96PS1 177 aa16.42■□□□□ 0.22
CCDC88B-203ENST00000359902 PRSS22Q9GZN4 317 aa16.42■□□□□ 0.22
CCDC88B-203ENST00000359902 VWC2LB2RUY7 222 aa16.41■□□□□ 0.22
CCDC88B-203ENST00000359902 TCAPO15273 167 aa16.41■□□□□ 0.22
CCDC88B-203ENST00000359902 Q8N6K4 173 aa16.41■□□□□ 0.22
CCDC88B-203ENST00000359902 S4R3C0 116 aa16.41■□□□□ 0.22
CCDC88B-203ENST00000359902 IGLV11-55A0A075B6I3 123 aa16.41■□□□□ 0.22
CCDC88B-203ENST00000359902 NCBP2LA6PVI3 153 aaKnown RBP16.41■□□□□ 0.22
CCDC88B-203ENST00000359902 NPIPB5A8MRT5 1133 aa16.41■□□□□ 0.22
CCDC88B-203ENST00000359902 OOSP1A8MZH6 123 aa16.41■□□□□ 0.22
CCDC88B-203ENST00000359902 H3BRN7 92 aa16.41■□□□□ 0.22
CCDC88B-203ENST00000359902 ZNF253O75346 499 aa16.41■□□□□ 0.22
CCDC88B-203ENST00000359902 SAMD10Q9BYL1 202 aa16.41■□□□□ 0.22
CCDC88B-203ENST00000359902 POLR3KQ9Y2Y1 108 aaPredicted RBP16.41■□□□□ 0.22
CCDC88B-203ENST00000359902 SPTBN1Q01082 2364 aaKnown RBP16.41■□□□□ 0.22
CCDC88B-203ENST00000359902 C19orf71A6NCJ1 209 aa16.4■□□□□ 0.22
CCDC88B-203ENST00000359902 GPX1P07203 203 aa16.4■□□□□ 0.22
CCDC88B-203ENST00000359902 NDPQ00604 133 aa16.4■□□□□ 0.22
CCDC88B-203ENST00000359902 EBI3Q14213 229 aa16.4■□□□□ 0.22
CCDC88B-203ENST00000359902 MINOS1Q5TGZ0 78 aa16.4■□□□□ 0.22
CCDC88B-203ENST00000359902 ARPC1AQ92747 370 aa16.4■□□□□ 0.22
CCDC88B-203ENST00000359902 RCHY1Q96PM5 261 aa16.4■□□□□ 0.22
CCDC88B-203ENST00000359902 ZNF492Q9P255 531 aa16.4■□□□□ 0.22
CCDC88B-203ENST00000359902 MINOS1-NBL1R4GNA1 71 aa16.4■□□□□ 0.22
CCDC88B-203ENST00000359902 BPIFA4PQ86YQ2 179 aa16.4■□□□□ 0.22
CCDC88B-203ENST00000359902 RNF125Q96EQ8 232 aa16.4■□□□□ 0.22
CCDC88B-203ENST00000359902 SIRPDQ9H106 197 aa16.4■□□□□ 0.22
CCDC88B-203ENST00000359902 RPP21Q9H633 154 aaKnown RBP16.4■□□□□ 0.22
CCDC88B-203ENST00000359902 HIVEP3Q5T1R4 2406 aa16.39■□□□□ 0.22
CCDC88B-203ENST00000359902 TRBV19A0A075B6N1 114 aa16.39■□□□□ 0.21
CCDC88B-203ENST00000359902 TRAV8-1A0A0A6YYK1 113 aa16.39■□□□□ 0.21
CCDC88B-203ENST00000359902 WI2-2373I1.2A0A1W2PRP0 233 aa16.39■□□□□ 0.21
CCDC88B-203ENST00000359902 IGLV2-11P01706 119 aa16.39■□□□□ 0.21
CCDC88B-203ENST00000359902 IL4P05112 153 aa16.39■□□□□ 0.21
CCDC88B-203ENST00000359902 TTC9CQ8N5M4 171 aa16.39■□□□□ 0.21
CCDC88B-203ENST00000359902 C17orf77Q96MU5 243 aa16.39■□□□□ 0.21
CCDC88B-203ENST00000359902 IGLC2P0DOY2 106 aa16.39■□□□□ 0.21
CCDC88B-203ENST00000359902 SIGLECL1Q8N7X8 197 aa16.39■□□□□ 0.21
CCDC88B-203ENST00000359902 TBX15Q96SF7 602 aa16.39■□□□□ 0.21
CCDC88B-203ENST00000359902 UBTD1Q9HAC8 227 aa16.39■□□□□ 0.21
CCDC88B-203ENST00000359902 A0A1W2PS18 150 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms