RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 THAP8Q8NA92 274 aa5.44□□□□□ -1.54
VPS39-202ENST00000348544 RND1Q92730 232 aa5.44□□□□□ -1.54
VPS39-202ENST00000348544 GUCD1Q96NT3 240 aa5.44□□□□□ -1.54
VPS39-202ENST00000348544 GTSF1LQ9H1H1 148 aa5.44□□□□□ -1.54
VPS39-202ENST00000348544 MED13Q9UHV7 2174 aa5.44□□□□□ -1.54
VPS39-202ENST00000348544 DSPP15924 2871 aaKnown RBP5.44□□□□□ -1.54
VPS39-202ENST00000348544 A6NJY4 79 aa5.43□□□□□ -1.54
VPS39-202ENST00000348544 IGLV2-11P01706 119 aa5.43□□□□□ -1.54
VPS39-202ENST00000348544 CECR9P0C854 216 aa5.43□□□□□ -1.54
VPS39-202ENST00000348544 GP9P14770 177 aa5.43□□□□□ -1.54
VPS39-202ENST00000348544 ORM2P19652 201 aa5.43□□□□□ -1.54
VPS39-202ENST00000348544 COL8A1P27658 744 aa5.43□□□□□ -1.54
VPS39-202ENST00000348544 CEACAM3P40198 252 aa5.43□□□□□ -1.54
VPS39-202ENST00000348544 IFI27P40305 119 aaPredicted RBP5.43□□□□□ -1.54
VPS39-202ENST00000348544 FXYD7P58549 80 aa5.43□□□□□ -1.54
VPS39-202ENST00000348544 NHLH1Q02575 133 aa5.43□□□□□ -1.54
VPS39-202ENST00000348544 TM4SF20Q53R12 229 aa5.43□□□□□ -1.54
VPS39-202ENST00000348544 Q86TA4 180 aa5.43□□□□□ -1.54
VPS39-202ENST00000348544 OR5AN1Q8NGI8 311 aa5.43□□□□□ -1.54
VPS39-202ENST00000348544 FAM222BQ8WU58 562 aa5.43□□□□□ -1.54
VPS39-202ENST00000348544 DAZAP1Q96EP5 407 aaKnown RBP5.43□□□□□ -1.54
VPS39-202ENST00000348544 ASCL2Q99929 193 aa5.43□□□□□ -1.54
VPS39-202ENST00000348544 SMPXQ9UHP9 88 aa5.43□□□□□ -1.54
VPS39-202ENST00000348544 PRRC2CQ9Y520 2896 aaKnown RBP5.43□□□□□ -1.54
VPS39-202ENST00000348544 NDUFS8O00217 210 aa5.43□□□□□ -1.54
VPS39-202ENST00000348544 ZNF207O43670 478 aaKnown RBP5.43□□□□□ -1.54
VPS39-202ENST00000348544 PRB4P10163 310 aaPredicted RBP5.43□□□□□ -1.54
VPS39-202ENST00000348544 FCGR2BP31994 310 aaPredicted RBP5.43□□□□□ -1.54
VPS39-202ENST00000348544 CFHR2P36980 270 aa5.43□□□□□ -1.54
VPS39-202ENST00000348544 CSN1S1P47710 185 aa5.43□□□□□ -1.54
VPS39-202ENST00000348544 CACNG7P62955 275 aa5.43□□□□□ -1.54
VPS39-202ENST00000348544 RPL24P83731 157 aaKnown RBP5.43□□□□□ -1.54
VPS39-202ENST00000348544 SMAGPQ0VAQ4 97 aa5.43□□□□□ -1.54
VPS39-202ENST00000348544 C6orf15Q6UXA7 325 aaPredicted RBP5.43□□□□□ -1.54
VPS39-202ENST00000348544 FA2HQ7L5A8 372 aa5.43□□□□□ -1.54
VPS39-202ENST00000348544 RBMXL3Q8N7X1 1067 aaKnown RBP5.43□□□□□ -1.54
VPS39-202ENST00000348544 OR9G4Q8NGQ1 327 aa5.43□□□□□ -1.54
VPS39-202ENST00000348544 PPP1R35Q8TAP8 253 aa5.43□□□□□ -1.54
VPS39-202ENST00000348544 Q9H3A6 140 aa5.43□□□□□ -1.54
VPS39-202ENST00000348544 MRPS17Q9Y2R5 130 aaKnown RBP5.43□□□□□ -1.54
VPS39-202ENST00000348544 TANC2Q9HCD6 1990 aa5.43□□□□□ -1.54
VPS39-202ENST00000348544 A0A1B0GUT8 65 aa5.42□□□□□ -1.54
VPS39-202ENST00000348544 NKX2-8O15522 239 aa5.42□□□□□ -1.54
VPS39-202ENST00000348544 LGALS9BQ3B8N2 356 aa5.42□□□□□ -1.54
VPS39-202ENST00000348544 LGALS9CQ6DKI2 356 aa5.42□□□□□ -1.54
VPS39-202ENST00000348544 SLC25A48Q6ZT89 311 aaKnown RBP5.42□□□□□ -1.54
VPS39-202ENST00000348544 RPRMLQ8N4K4 120 aa5.42□□□□□ -1.54
VPS39-202ENST00000348544 ZADH2Q8N4Q0 377 aa5.42□□□□□ -1.54
VPS39-202ENST00000348544 TMEM105Q8N8V8 129 aa5.42□□□□□ -1.54
VPS39-202ENST00000348544 GATD1Q8NB37 220 aa5.42□□□□□ -1.54
VPS39-202ENST00000348544 OR4X2Q8NGF9 303 aa5.42□□□□□ -1.54
VPS39-202ENST00000348544 PRSS3P2Q8NHM4 247 aa5.42□□□□□ -1.54
VPS39-202ENST00000348544 WFDC12Q8WWY7 111 aa5.42□□□□□ -1.54
VPS39-202ENST00000348544 FLYWCH2Q96CP2 140 aaKnown RBP5.42□□□□□ -1.54
VPS39-202ENST00000348544 MRPL20Q9BYC9 149 aaKnown RBP5.42□□□□□ -1.54
VPS39-202ENST00000348544 F11RQ9Y624 299 aaKnown RBP5.42□□□□□ -1.54
VPS39-202ENST00000348544 LOC389332A0A1B0GUA5 103 aa5.42□□□□□ -1.54
VPS39-202ENST00000348544 hADV38S2A0JD32 116 aa5.42□□□□□ -1.54
VPS39-202ENST00000348544 TMEM189A5PLL7 270 aa5.42□□□□□ -1.54
VPS39-202ENST00000348544 PATE3B3GLJ2 98 aa5.42□□□□□ -1.54
VPS39-202ENST00000348544 SIVA1O15304 175 aa5.42□□□□□ -1.54
VPS39-202ENST00000348544 FABP2P12104 132 aa5.42□□□□□ -1.54
VPS39-202ENST00000348544 FXYD2P54710 66 aa5.42□□□□□ -1.54
VPS39-202ENST00000348544 ERHP84090 104 aaKnown RBP5.42□□□□□ -1.54
VPS39-202ENST00000348544 SAMD5Q5TGI4 173 aa5.42□□□□□ -1.54
VPS39-202ENST00000348544 MOGAT3Q86VF5 341 aa5.42□□□□□ -1.54
VPS39-202ENST00000348544 ZCCHC24Q8N2G6 241 aaKnown RBP5.42□□□□□ -1.54
VPS39-202ENST00000348544 HARBI1Q96MB7 349 aa5.42□□□□□ -1.54
VPS39-202ENST00000348544 SIGLEC8Q9NYZ4 499 aa5.42□□□□□ -1.54
VPS39-202ENST00000348544 SVILO95425 2214 aa5.42□□□□□ -1.54
VPS39-202ENST00000348544 COL27A1Q8IZC6 1860 aaPredicted RBP5.42□□□□□ -1.54
VPS39-202ENST00000348544 INS-IGF2F8WCM5 200 aa5.41□□□□□ -1.54
VPS39-202ENST00000348544 K7ERJ3 54 aa5.41□□□□□ -1.54
VPS39-202ENST00000348544 CFIP05156 583 aa5.41□□□□□ -1.54
VPS39-202ENST00000348544 SCGB1A1P11684 91 aa5.41□□□□□ -1.54
VPS39-202ENST00000348544 BMI1P35226 326 aa5.41□□□□□ -1.54
VPS39-202ENST00000348544 CXCL12P48061 93 aa5.41□□□□□ -1.54
VPS39-202ENST00000348544 PAX8Q06710 450 aa5.41□□□□□ -1.54
VPS39-202ENST00000348544 Q5PR19 223 aa5.41□□□□□ -1.54
VPS39-202ENST00000348544 MBNL2Q5VZF2 373 aaKnown RBP5.41□□□□□ -1.54
VPS39-202ENST00000348544 PRNTQ86SH4 94 aa5.41□□□□□ -1.54
VPS39-202ENST00000348544 STXBP6Q8NFX7 210 aa5.41□□□□□ -1.54
VPS39-202ENST00000348544 SRSF12Q8WXF0 261 aaKnown RBP5.41□□□□□ -1.54
VPS39-202ENST00000348544 TSSC4Q9Y5U2 329 aaPredicted RBP5.41□□□□□ -1.54
VPS39-202ENST00000348544 PLXNB1O43157 2135 aa5.41□□□□□ -1.54
VPS39-202ENST00000348544 LHBP01229 141 aa5.41□□□□□ -1.54
VPS39-202ENST00000348544 HOXB4P17483 251 aaPredicted RBP5.41□□□□□ -1.54
VPS39-202ENST00000348544 NMUP48645 174 aa5.41□□□□□ -1.54
VPS39-202ENST00000348544 PSG3Q16557 428 aa5.41□□□□□ -1.54
VPS39-202ENST00000348544 CFAP161Q6P656 301 aa5.41□□□□□ -1.54
VPS39-202ENST00000348544 Q6ZT83 130 aa5.41□□□□□ -1.54
VPS39-202ENST00000348544 GOLT1AQ6ZVE7 132 aa5.41□□□□□ -1.54
VPS39-202ENST00000348544 EXOC3-AS1Q8N2X6 119 aa5.41□□□□□ -1.54
VPS39-202ENST00000348544 MDS2Q8NDY4 140 aa5.41□□□□□ -1.54
VPS39-202ENST00000348544 PHLDA1Q8WV24 401 aaPredicted RBP5.41□□□□□ -1.54
VPS39-202ENST00000348544 SIGMAR1Q99720 223 aa5.41□□□□□ -1.54
VPS39-202ENST00000348544 TTTY13Q9BZ97 58 aa5.41□□□□□ -1.54
VPS39-202ENST00000348544 RAI1Q7Z5J4 1906 aaPredicted RBP5.41□□□□□ -1.54
VPS39-202ENST00000348544 IGKV2D-26A0A0A0MRZ7 120 aa5.41□□□□□ -1.54
VPS39-202ENST00000348544 TRGV5A0A0B4J1U4 118 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms