RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 CNPY1Q3B7I2 92 aa12.82□□□□□ -0.36
HDDC3-201ENST00000330334 SPANXN5Q5MJ07 72 aa12.82□□□□□ -0.36
HDDC3-201ENST00000330334 FOXI2Q6ZQN5 318 aa12.82□□□□□ -0.36
HDDC3-201ENST00000330334 OR8I2Q8N0Y5 310 aa12.82□□□□□ -0.36
HDDC3-201ENST00000330334 COQ8AQ8NI60 647 aa12.82□□□□□ -0.36
HDDC3-201ENST00000330334 NEU1Q99519 415 aa12.82□□□□□ -0.36
HDDC3-201ENST00000330334 C7orf50Q9BRJ6 194 aaKnown RBP12.82□□□□□ -0.36
HDDC3-201ENST00000330334 SAV1Q9H4B6 383 aaPredicted RBP12.82□□□□□ -0.36
HDDC3-201ENST00000330334 VPS13DQ5THJ4 4388 aa12.81□□□□□ -0.36
HDDC3-201ENST00000330334 ELOA3CA0A087WX78 387 aaPredicted RBP12.81□□□□□ -0.36
HDDC3-201ENST00000330334 CENPXA8MT69 81 aa12.81□□□□□ -0.36
HDDC3-201ENST00000330334 HLA-DMBP28068 263 aa12.81□□□□□ -0.36
HDDC3-201ENST00000330334 MEOX2P50222 304 aa12.81□□□□□ -0.36
HDDC3-201ENST00000330334 OR4D5Q8NGN0 318 aa12.81□□□□□ -0.36
HDDC3-201ENST00000330334 PPP1R14BQ96C90 147 aa12.81□□□□□ -0.36
HDDC3-201ENST00000330334 SDHCQ99643 169 aaPredicted RBP12.81□□□□□ -0.36
HDDC3-201ENST00000330334 XCL2Q9UBD3 114 aa12.81□□□□□ -0.36
HDDC3-201ENST00000330334 ADAP1O75689 374 aa12.8□□□□□ -0.36
HDDC3-201ENST00000330334 IFNA21P01568 189 aa12.8□□□□□ -0.36
HDDC3-201ENST00000330334 OR4E1P0C645 316 aa12.8□□□□□ -0.36
HDDC3-201ENST00000330334 ZNF705AQ6ZN79 300 aaPredicted RBP12.8□□□□□ -0.36
HDDC3-201ENST00000330334 TMEM144Q7Z5S9 345 aa12.8□□□□□ -0.36
HDDC3-201ENST00000330334 BPIFCQ8NFQ6 507 aa12.8□□□□□ -0.36
HDDC3-201ENST00000330334 LINC00052Q96N35 136 aa12.8□□□□□ -0.36
HDDC3-201ENST00000330334 FLVCR2Q9UPI3 526 aa12.8□□□□□ -0.36
HDDC3-201ENST00000330334 TRAV10A0A0B4J240 114 aa12.79□□□□□ -0.36
HDDC3-201ENST00000330334 SMIM9A6NGZ8 99 aa12.79□□□□□ -0.36
HDDC3-201ENST00000330334 ZNF98A6NK75 572 aa12.79□□□□□ -0.36
HDDC3-201ENST00000330334 GALR1P47211 349 aa12.79□□□□□ -0.36
HDDC3-201ENST00000330334 PAX9P55771 341 aa12.79□□□□□ -0.36
HDDC3-201ENST00000330334 GDF5OSQ5U4N7 250 aa12.79□□□□□ -0.36
HDDC3-201ENST00000330334 SMIM8Q96KF7 97 aa12.79□□□□□ -0.36
HDDC3-201ENST00000330334 GPR82Q96P67 336 aa12.79□□□□□ -0.36
HDDC3-201ENST00000330334 APLNQ9ULZ1 77 aa12.79□□□□□ -0.36
HDDC3-201ENST00000330334 ZNF705FA8MVS1 300 aaPredicted RBP12.78□□□□□ -0.36
HDDC3-201ENST00000330334 ZNF705DP0CH99 300 aaPredicted RBP12.78□□□□□ -0.36
HDDC3-201ENST00000330334 ZNF705BP0CI00 300 aaPredicted RBP12.78□□□□□ -0.36
HDDC3-201ENST00000330334 BTCP35070 178 aa12.78□□□□□ -0.36
HDDC3-201ENST00000330334 POLR2GP62487 172 aaKnown RBP eCLIP12.78□□□□□ -0.36
HDDC3-201ENST00000330334 ACOT7LQ6ZUV0 252 aa12.78□□□□□ -0.36
HDDC3-201ENST00000330334 RPP25LQ8N5L8 163 aaKnown RBP12.78□□□□□ -0.36
HDDC3-201ENST00000330334 OR1B1Q8NGR6 318 aa12.78□□□□□ -0.36
HDDC3-201ENST00000330334 PSENENQ9NZ42 101 aa12.78□□□□□ -0.36
HDDC3-201ENST00000330334 PMS2P5A8MQ11 134 aa12.77□□□□□ -0.37
HDDC3-201ENST00000330334 IGLL5B9A064 214 aa12.77□□□□□ -0.37
HDDC3-201ENST00000330334 FNDC10F2Z333 226 aa12.77□□□□□ -0.37
HDDC3-201ENST00000330334 H3BP45 60 aa12.77□□□□□ -0.37
HDDC3-201ENST00000330334 AKR1C1Q04828 323 aa12.77□□□□□ -0.37
HDDC3-201ENST00000330334 EBLN2Q6P2I7 272 aa12.77□□□□□ -0.37
HDDC3-201ENST00000330334 TMEM182Q6ZP80 229 aaPredicted RBP12.77□□□□□ -0.37
HDDC3-201ENST00000330334 Q6ZTC4 211 aa12.77□□□□□ -0.37
HDDC3-201ENST00000330334 ZNF709Q8N972 641 aa12.77□□□□□ -0.37
HDDC3-201ENST00000330334 SLC25A32Q9H2D1 315 aa12.77□□□□□ -0.37
HDDC3-201ENST00000330334 FRAS1Q86XX4 4008 aa12.76□□□□□ -0.37
HDDC3-201ENST00000330334 TMEM189A5PLL7 270 aa12.76□□□□□ -0.37
HDDC3-201ENST00000330334 IL7P13232 177 aa12.76□□□□□ -0.37
HDDC3-201ENST00000330334 ORM2P19652 201 aa12.76□□□□□ -0.37
HDDC3-201ENST00000330334 TAS2R30P59541 319 aa12.76□□□□□ -0.37
HDDC3-201ENST00000330334 PLP1P60201 277 aa12.76□□□□□ -0.37
HDDC3-201ENST00000330334 SELENOTP62341 195 aa12.76□□□□□ -0.37
HDDC3-201ENST00000330334 C12orf74Q32Q52 190 aa12.76□□□□□ -0.37
HDDC3-201ENST00000330334 C4orf46Q504U0 113 aa12.76□□□□□ -0.37
HDDC3-201ENST00000330334 MITD1Q8WV92 249 aa12.76□□□□□ -0.37
HDDC3-201ENST00000330334 C16orf92Q96LL3 132 aa12.76□□□□□ -0.37
HDDC3-201ENST00000330334 C17orf77Q96MU5 243 aa12.76□□□□□ -0.37
HDDC3-201ENST00000330334 RSG1Q9BU20 258 aa12.76□□□□□ -0.37
HDDC3-201ENST00000330334 RNF126Q9BV68 326 aa12.76□□□□□ -0.37
HDDC3-201ENST00000330334 TMEM147Q9BVK8 224 aa12.76□□□□□ -0.37
HDDC3-201ENST00000330334 RPRMQ9NS64 109 aa12.76□□□□□ -0.37
HDDC3-201ENST00000330334 NDUFA13Q9P0J0 144 aa12.76□□□□□ -0.37
HDDC3-201ENST00000330334 A0A0J9YX75 114 aa12.75□□□□□ -0.37
HDDC3-201ENST00000330334 A8MTW9 85 aa12.75□□□□□ -0.37
HDDC3-201ENST00000330334 DEDDO75618 318 aa12.75□□□□□ -0.37
HDDC3-201ENST00000330334 ANXA7P20073 488 aaKnown RBP12.75□□□□□ -0.37
HDDC3-201ENST00000330334 GATA2P23769 480 aaPredicted RBP12.75□□□□□ -0.37
HDDC3-201ENST00000330334 DEFB1P60022 68 aa12.75□□□□□ -0.37
HDDC3-201ENST00000330334 PSG9Q00887 426 aa12.75□□□□□ -0.37
HDDC3-201ENST00000330334 TMEM14EPQ6UXP3 125 aa12.75□□□□□ -0.37
HDDC3-201ENST00000330334 CYP2G1PQ6ZSU1 146 aa12.75□□□□□ -0.37
HDDC3-201ENST00000330334 OR4B1Q8NGF8 309 aa12.75□□□□□ -0.37
HDDC3-201ENST00000330334 SLC25A22Q9H936 323 aa12.75□□□□□ -0.37
HDDC3-201ENST00000330334 LINC00854A0A1B0GVQ3 168 aa12.74□□□□□ -0.37
HDDC3-201ENST00000330334 K7EPK0 472 aa12.74□□□□□ -0.37
HDDC3-201ENST00000330334 SSSCA1O60232 199 aa12.74□□□□□ -0.37
HDDC3-201ENST00000330334 IGKV3-20P01619 116 aa12.74□□□□□ -0.37
HDDC3-201ENST00000330334 IL5P05113 134 aa12.74□□□□□ -0.37
HDDC3-201ENST00000330334 DLK1P80370 383 aa12.74□□□□□ -0.37
HDDC3-201ENST00000330334 FAM78BQ5VT40 261 aa12.74□□□□□ -0.37
HDDC3-201ENST00000330334 S100A7AQ86SG5 101 aa12.74□□□□□ -0.37
HDDC3-201ENST00000330334 NPVFQ9HCQ7 196 aa12.74□□□□□ -0.37
HDDC3-201ENST00000330334 CELA1Q9UNI1 258 aa12.74□□□□□ -0.37
HDDC3-201ENST00000330334 DNAH10Q8IVF4 4471 aa12.74□□□□□ -0.37
HDDC3-201ENST00000330334 TSC22D2O75157 780 aa12.73□□□□□ -0.37
HDDC3-201ENST00000330334 HYPMO75409 117 aa12.73□□□□□ -0.37
HDDC3-201ENST00000330334 SPART-AS1P0CW21 52 aa12.73□□□□□ -0.37
HDDC3-201ENST00000330334 IAH1Q2TAA2 248 aaPredicted RBP12.73□□□□□ -0.37
HDDC3-201ENST00000330334 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.73□□□□□ -0.37
HDDC3-201ENST00000330334 OR10P1Q8NGE3 313 aa12.73□□□□□ -0.37
HDDC3-201ENST00000330334 C20orf173Q96LM9 149 aa12.73□□□□□ -0.37
HDDC3-201ENST00000330334 SHANK2-AS3Q9BTD1 123 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms