RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 HYPMO75409 117 aa14.36□□□□□ -0.11
USP39-201ENST00000323701 OR2C1O95371 312 aa14.36□□□□□ -0.11
USP39-201ENST00000323701 PLP1P60201 277 aa14.36□□□□□ -0.11
USP39-201ENST00000323701 Q56UQ5 140 aa14.36□□□□□ -0.11
USP39-201ENST00000323701 PQLC2Q6ZP29 291 aa14.36□□□□□ -0.11
USP39-201ENST00000323701 CHRDL1Q9BU40 450 aa14.36□□□□□ -0.11
USP39-201ENST00000323701 PARLQ9H300 379 aa14.36□□□□□ -0.11
USP39-201ENST00000323701 ELOA3CA0A087WX78 387 aaPredicted RBP14.36□□□□□ -0.11
USP39-201ENST00000323701 IGHG2P01859 326 aa14.36□□□□□ -0.11
USP39-201ENST00000323701 CTSGP08311 255 aa14.36□□□□□ -0.11
USP39-201ENST00000323701 ADMP35318 185 aa14.36□□□□□ -0.11
USP39-201ENST00000323701 FABP9Q0Z7S8 132 aa14.36□□□□□ -0.11
USP39-201ENST00000323701 KLK9Q2XQG4 91 aa14.36□□□□□ -0.11
USP39-201ENST00000323701 KLK9Q9UKQ9 250 aa14.36□□□□□ -0.11
USP39-201ENST00000323701 OTOGQ6ZRI0 2925 aa14.35□□□□□ -0.11
USP39-201ENST00000323701 TMEM250H0YL14 139 aa14.35□□□□□ -0.11
USP39-201ENST00000323701 GATCO43716 136 aaKnown RBP14.35□□□□□ -0.11
USP39-201ENST00000323701 TAS2R45P59539 299 aa14.35□□□□□ -0.11
USP39-201ENST00000323701 ZNF491Q8N8L2 437 aa14.35□□□□□ -0.11
USP39-201ENST00000323701 NIPSNAP3BQ9BS92 247 aa14.35□□□□□ -0.11
USP39-201ENST00000323701 THYN1Q9P016 225 aa14.35□□□□□ -0.11
USP39-201ENST00000323701 IGHV3-35A0A0C4DH35 117 aa14.34□□□□□ -0.11
USP39-201ENST00000323701 SCO2A0A1W2PP80 73 aa14.34□□□□□ -0.11
USP39-201ENST00000323701 TAGLN2P37802 199 aaKnown RBP14.34□□□□□ -0.11
USP39-201ENST00000323701 CRIP2P52943 208 aaPredicted RBP14.34□□□□□ -0.11
USP39-201ENST00000323701 TMEM95Q3KNT9 176 aa14.34□□□□□ -0.11
USP39-201ENST00000323701 C16orf82Q7Z2V1 217 aa14.34□□□□□ -0.11
USP39-201ENST00000323701 SMIM7Q9BQ49 75 aa14.34□□□□□ -0.11
USP39-201ENST00000323701 GGTLC3B5MD39 225 aa14.34□□□□□ -0.11
USP39-201ENST00000323701 NDUFB4O95168 129 aa14.34□□□□□ -0.11
USP39-201ENST00000323701 IGF1P05019 195 aa14.34□□□□□ -0.11
USP39-201ENST00000323701 ZNF600Q6ZNG1 722 aa14.34□□□□□ -0.11
USP39-201ENST00000323701 ZNF502Q8TBZ5 544 aa14.34□□□□□ -0.11
USP39-201ENST00000323701 FXYD5Q96DB9 178 aa14.34□□□□□ -0.11
USP39-201ENST00000323701 CCDC140Q96MF4 163 aa14.34□□□□□ -0.11
USP39-201ENST00000323701 RNF2Q99496 336 aa14.34□□□□□ -0.11
USP39-201ENST00000323701 MRPL27Q9P0M9 148 aaKnown RBP14.34□□□□□ -0.11
USP39-201ENST00000323701 PITPNC1Q9UKF7 332 aa14.34□□□□□ -0.11
USP39-201ENST00000323701 TOMM40O96008 361 aa14.33□□□□□ -0.11
USP39-201ENST00000323701 UBE2L3P68036 154 aaKnown RBP14.33□□□□□ -0.11
USP39-201ENST00000323701 ZNF343Q6P1L6 599 aa14.33□□□□□ -0.11
USP39-201ENST00000323701 C9orf139Q6ZV77 190 aa14.33□□□□□ -0.11
USP39-201ENST00000323701 PAXXQ9BUH6 204 aa14.33□□□□□ -0.11
USP39-201ENST00000323701 IGHV3OR16-8A0A075B7F1 116 aa14.33□□□□□ -0.12
USP39-201ENST00000323701 IL4P05112 153 aa14.33□□□□□ -0.12
USP39-201ENST00000323701 KRTAP1-1Q07627 177 aa14.33□□□□□ -0.12
USP39-201ENST00000323701 USF2Q15853 346 aaPredicted RBP14.33□□□□□ -0.12
USP39-201ENST00000323701 TVP23CQ96ET8 276 aa14.33□□□□□ -0.12
USP39-201ENST00000323701 SDF2L1Q9HCN8 221 aa14.33□□□□□ -0.12
USP39-201ENST00000323701 TMEM167BQ9NRX6 74 aa14.33□□□□□ -0.12
USP39-201ENST00000323701 HIGD1AQ9Y241 93 aa14.33□□□□□ -0.12
USP39-201ENST00000323701 H3BTX0 84 aa14.32□□□□□ -0.12
USP39-201ENST00000323701 HIST1H1BP16401 226 aaKnown RBP14.32□□□□□ -0.12
USP39-201ENST00000323701 PPIFP30405 207 aaKnown RBP14.32□□□□□ -0.12
USP39-201ENST00000323701 GPR183P32249 361 aa14.32□□□□□ -0.12
USP39-201ENST00000323701 RNF125Q96EQ8 232 aa14.32□□□□□ -0.12
USP39-201ENST00000323701 TMEM68Q96MH6 324 aa14.32□□□□□ -0.12
USP39-201ENST00000323701 SLC25A39Q9BZJ4 359 aaPredicted RBP14.32□□□□□ -0.12
USP39-201ENST00000323701 MTORP42345 2549 aa14.32□□□□□ -0.12
USP39-201ENST00000323701 TRBV20OR9-2A0A075B6H5 130 aa14.32□□□□□ -0.12
USP39-201ENST00000323701 WI2-2373I1.2A0A1W2PRP0 233 aa14.32□□□□□ -0.12
USP39-201ENST00000323701 PDE6DO43924 150 aa14.32□□□□□ -0.12
USP39-201ENST00000323701 CLEC3BP05452 202 aa14.32□□□□□ -0.12
USP39-201ENST00000323701 YPEL3P61236 119 aaPredicted RBP14.32□□□□□ -0.12
USP39-201ENST00000323701 Q6YL49 198 aa14.32□□□□□ -0.12
USP39-201ENST00000323701 LCNL1Q6ZST4 164 aa14.32□□□□□ -0.12
USP39-201ENST00000323701 NECAP1Q8NC96 275 aa14.32□□□□□ -0.12
USP39-201ENST00000323701 VN1R17PQ8TDU5 208 aa14.32□□□□□ -0.12
USP39-201ENST00000323701 PGPEP1LA6NFU8 196 aa14.31□□□□□ -0.12
USP39-201ENST00000323701 M0QZK8 103 aa14.31□□□□□ -0.12
USP39-201ENST00000323701 CXCL1P09341 107 aa14.31□□□□□ -0.12
USP39-201ENST00000323701 GP9P14770 177 aa14.31□□□□□ -0.12
USP39-201ENST00000323701 FOXC2Q99958 501 aa14.31□□□□□ -0.12
USP39-201ENST00000323701 Q8WTZ3 238 aa14.3□□□□□ -0.12
USP39-201ENST00000323701 KLK15Q9H2R5 256 aa14.3□□□□□ -0.12
USP39-201ENST00000323701 AURKAIP1Q9NWT8 199 aaPredicted RBP14.3□□□□□ -0.12
USP39-201ENST00000323701 TRAV30A0A087WSZ9 112 aa14.3□□□□□ -0.12
USP39-201ENST00000323701 A0A087WWC5 75 aa14.3□□□□□ -0.12
USP39-201ENST00000323701 AP4M1O00189 453 aa14.3□□□□□ -0.12
USP39-201ENST00000323701 HOXA3O43365 443 aaPredicted RBP14.3□□□□□ -0.12
USP39-201ENST00000323701 FCGR2BP31994 310 aaPredicted RBP14.3□□□□□ -0.12
USP39-201ENST00000323701 SUMO1P63165 101 aaKnown RBP14.3□□□□□ -0.12
USP39-201ENST00000323701 ELOBQ15370 118 aa14.3□□□□□ -0.12
USP39-201ENST00000323701 CLEC19AQ6UXS0 136 aa14.3□□□□□ -0.12
USP39-201ENST00000323701 DUX5Q96PT3 197 aa14.3□□□□□ -0.12
USP39-201ENST00000323701 BLNKQ8WV28 456 aa14.29□□□□□ -0.12
USP39-201ENST00000323701 URGCP-MRPS24S4R325 110 aa14.29□□□□□ -0.12
USP39-201ENST00000323701 TMEM241Q24JQ0 296 aa14.29□□□□□ -0.12
USP39-201ENST00000323701 ELOVL1Q9BW60 279 aa14.29□□□□□ -0.12
USP39-201ENST00000323701 NDUFS6O75380 124 aaKnown RBP14.28□□□□□ -0.12
USP39-201ENST00000323701 TRGV3P03979 118 aa14.28□□□□□ -0.12
USP39-201ENST00000323701 CRYBB3P26998 211 aa14.28□□□□□ -0.12
USP39-201ENST00000323701 RPL23P62829 140 aaKnown RBP14.28□□□□□ -0.12
USP39-201ENST00000323701 C10orf99Q6UWK7 81 aa14.28□□□□□ -0.12
USP39-201ENST00000323701 C1QL4Q86Z23 238 aa14.28□□□□□ -0.12
USP39-201ENST00000323701 TXN2Q99757 166 aa14.28□□□□□ -0.12
USP39-201ENST00000323701 TXNDC17Q9BRA2 123 aa14.28□□□□□ -0.12
USP39-201ENST00000323701 SHANK2-AS3Q9BTD1 123 aa14.28□□□□□ -0.12
USP39-201ENST00000323701 NAT8Q9UHE5 227 aa14.28□□□□□ -0.12
USP39-201ENST00000323701 VPREB3Q9UKI3 123 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms