RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 C11orf42Q8N5U0 333 aa17.56■□□□□ 0.4
SHMT1-201ENST00000316694 PRSS33Q8NF86 280 aa17.56■□□□□ 0.4
SHMT1-201ENST00000316694 FMC1Q96HJ9 113 aa17.56■□□□□ 0.4
SHMT1-201ENST00000316694 LAMTOR2Q9Y2Q5 125 aa17.56■□□□□ 0.4
SHMT1-201ENST00000316694 VSTM5A8MXK1 200 aa17.56■□□□□ 0.4
SHMT1-201ENST00000316694 TOMM40O96008 361 aa17.56■□□□□ 0.4
SHMT1-201ENST00000316694 BTF3P20290 206 aaKnown RBP17.56■□□□□ 0.4
SHMT1-201ENST00000316694 STPG4Q8N801 248 aa17.56■□□□□ 0.4
SHMT1-201ENST00000316694 GTSF1Q8WW33 167 aa17.56■□□□□ 0.4
SHMT1-201ENST00000316694 SMIM12Q96EX1 92 aa17.56■□□□□ 0.4
SHMT1-201ENST00000316694 PTPRZ1P23471 2315 aaPredicted RBP17.55■□□□□ 0.4
SHMT1-201ENST00000316694 A8MWL6 223 aa17.55■□□□□ 0.4
SHMT1-201ENST00000316694 M0QZ24 198 aa17.55■□□□□ 0.4
SHMT1-201ENST00000316694 TOX4O94842 621 aa17.55■□□□□ 0.4
SHMT1-201ENST00000316694 TCRAP04437 139 aa17.55■□□□□ 0.4
SHMT1-201ENST00000316694 SSX8Q7RTT4 187 aa17.55■□□□□ 0.4
SHMT1-201ENST00000316694 LTAP01374 205 aa17.55■□□□□ 0.4
SHMT1-201ENST00000316694 LYZP61626 148 aa17.55■□□□□ 0.4
SHMT1-201ENST00000316694 KIR3DL3Q8N743 410 aa17.55■□□□□ 0.4
SHMT1-201ENST00000316694 C8orf46Q8TAG6 207 aa17.55■□□□□ 0.4
SHMT1-201ENST00000316694 DAZAP1Q96EP5 407 aaKnown RBP17.55■□□□□ 0.4
SHMT1-201ENST00000316694 CLEC5AQ9NY25 188 aa17.55■□□□□ 0.4
SHMT1-201ENST00000316694 SIGLEC9Q9Y336 463 aa17.55■□□□□ 0.4
SHMT1-201ENST00000316694 SH2D7A6NKC9 451 aaPredicted RBP17.54■□□□□ 0.4
SHMT1-201ENST00000316694 OR8B3Q8NGG8 313 aa17.54■□□□□ 0.4
SHMT1-201ENST00000316694 OR8B2Q96RD0 313 aa17.54■□□□□ 0.4
SHMT1-201ENST00000316694 KAAG1Q9UBP8 84 aa17.54■□□□□ 0.4
SHMT1-201ENST00000316694 POLEQ07864 2286 aa17.54■□□□□ 0.4
SHMT1-201ENST00000316694 TACC2O95359 2948 aa17.54■□□□□ 0.4
SHMT1-201ENST00000316694 TRAV8-1A0A0A6YYK1 113 aa17.54■□□□□ 0.4
SHMT1-201ENST00000316694 PRSS22Q9GZN4 317 aa17.54■□□□□ 0.4
SHMT1-201ENST00000316694 INSIG2Q9Y5U4 225 aa17.54■□□□□ 0.4
SHMT1-201ENST00000316694 IGHV2-26A0A0B4J1V2 119 aa17.53■□□□□ 0.4
SHMT1-201ENST00000316694 PVRIGQ6DKI7 326 aa17.53■□□□□ 0.4
SHMT1-201ENST00000316694 URB1-AS1Q96HZ7 61 aa17.53■□□□□ 0.4
SHMT1-201ENST00000316694 HIGD1AQ9Y241 93 aa17.53■□□□□ 0.4
SHMT1-201ENST00000316694 IGHV1-69-2A0A0G2JMI3 117 aa17.53■□□□□ 0.4
SHMT1-201ENST00000316694 C2orf70A6NJV1 201 aa17.53■□□□□ 0.4
SHMT1-201ENST00000316694 ZZEF1O43149 2961 aa17.52■□□□□ 0.4
SHMT1-201ENST00000316694 C19orf71A6NCJ1 209 aa17.52■□□□□ 0.4
SHMT1-201ENST00000316694 E7EQL1 145 aa17.52■□□□□ 0.4
SHMT1-201ENST00000316694 PSG1P11464 419 aa17.52■□□□□ 0.4
SHMT1-201ENST00000316694 TSPOP30536 169 aa17.52■□□□□ 0.4
SHMT1-201ENST00000316694 GFRALQ6UXV0 394 aa17.52■□□□□ 0.4
SHMT1-201ENST00000316694 ZFP30Q9Y2G7 519 aa17.52■□□□□ 0.4
SHMT1-201ENST00000316694 F11RQ9Y624 299 aaKnown RBP17.52■□□□□ 0.4
SHMT1-201ENST00000316694 TRAV9-2A0A087WT02 112 aa17.52■□□□□ 0.39
SHMT1-201ENST00000316694 PPP1R27Q86WC6 154 aa17.52■□□□□ 0.39
SHMT1-201ENST00000316694 CRYGBP07316 175 aa17.51■□□□□ 0.39
SHMT1-201ENST00000316694 SPATA12Q7Z6I5 190 aa17.51■□□□□ 0.39
SHMT1-201ENST00000316694 Q8NA96 180 aa17.51■□□□□ 0.39
SHMT1-201ENST00000316694 FBXL15Q9H469 300 aa17.51■□□□□ 0.39
SHMT1-201ENST00000316694 IGHV1-3A0A0C4DH29 117 aa17.5■□□□□ 0.39
SHMT1-201ENST00000316694 SHISA9B4DS77 424 aa17.5■□□□□ 0.39
SHMT1-201ENST00000316694 HINT1P49773 126 aaPredicted RBP17.5■□□□□ 0.39
SHMT1-201ENST00000316694 EXOC3-AS1Q8N2X6 119 aa17.5■□□□□ 0.39
SHMT1-201ENST00000316694 CIARTQ8N365 385 aaPredicted RBP17.5■□□□□ 0.39
SHMT1-201ENST00000316694 ZNF492Q9P255 531 aa17.5■□□□□ 0.39
SHMT1-201ENST00000316694 RELNP78509 3460 aa17.5■□□□□ 0.39
SHMT1-201ENST00000316694 TEX22C9J3V5 150 aa17.5■□□□□ 0.39
SHMT1-201ENST00000316694 COX7A1P24310 79 aa17.5■□□□□ 0.39
SHMT1-201ENST00000316694 CT83Q5H943 113 aa17.5■□□□□ 0.39
SHMT1-201ENST00000316694 RBPMS2Q6ZRY4 209 aaKnown RBP17.5■□□□□ 0.39
SHMT1-201ENST00000316694 LYNX1G3V0Z9 82 aa17.49■□□□□ 0.39
SHMT1-201ENST00000316694 RBP4P02753 201 aa17.49■□□□□ 0.39
SHMT1-201ENST00000316694 LYNX1P0DP58 116 aa17.49■□□□□ 0.39
SHMT1-201ENST00000316694 IGLL1P15814 213 aa17.49■□□□□ 0.39
SHMT1-201ENST00000316694 COL8A1P27658 744 aa17.49■□□□□ 0.39
SHMT1-201ENST00000316694 GOLT1AQ6ZVE7 132 aa17.49■□□□□ 0.39
SHMT1-201ENST00000316694 PRNTQ86SH4 94 aa17.49■□□□□ 0.39
SHMT1-201ENST00000316694 IGLV1-47P01700 117 aa17.49■□□□□ 0.39
SHMT1-201ENST00000316694 PRB4P10163 310 aaPredicted RBP17.49■□□□□ 0.39
SHMT1-201ENST00000316694 PLP1P60201 277 aa17.49■□□□□ 0.39
SHMT1-201ENST00000316694 PRR30Q53SZ7 412 aaPredicted RBP17.49■□□□□ 0.39
SHMT1-201ENST00000316694 Q71RC1 249 aaPredicted RBP17.49■□□□□ 0.39
SHMT1-201ENST00000316694 Q86TA4 180 aa17.49■□□□□ 0.39
SHMT1-201ENST00000316694 TMEM70Q9BUB7 260 aa17.49■□□□□ 0.39
SHMT1-201ENST00000316694 SLC25A39Q9BZJ4 359 aaPredicted RBP17.49■□□□□ 0.39
SHMT1-201ENST00000316694 JKAMPQ9P055 326 aa17.49■□□□□ 0.39
SHMT1-201ENST00000316694 RALYQ9UKM9 306 aaKnown RBP17.49■□□□□ 0.39
SHMT1-201ENST00000316694 MUC6Q6W4X9 2439 aa17.49■□□□□ 0.39
SHMT1-201ENST00000316694 BUB1B-PAK6H3BSN5 160 aa17.48■□□□□ 0.39
SHMT1-201ENST00000316694 SIAH2O43255 324 aa17.48■□□□□ 0.39
SHMT1-201ENST00000316694 IGLC1P0CG04 106 aa17.48■□□□□ 0.39
SHMT1-201ENST00000316694 CHEK1O14757 476 aa17.48■□□□□ 0.39
SHMT1-201ENST00000316694 NDUFB8O95169 186 aa17.48■□□□□ 0.39
SHMT1-201ENST00000316694 LINC00614P0C842 121 aa17.48■□□□□ 0.39
SHMT1-201ENST00000316694 PLGLAQ15195 96 aa17.48■□□□□ 0.39
SHMT1-201ENST00000316694 DMRTA1Q5VZB9 504 aa17.48■□□□□ 0.39
SHMT1-201ENST00000316694 SRSF12Q8WXF0 261 aaKnown RBP17.48■□□□□ 0.39
SHMT1-201ENST00000316694 SOX21Q9Y651 276 aaPredicted RBP17.48■□□□□ 0.39
SHMT1-201ENST00000316694 TNFRSF14Q92956 283 aa17.47■□□□□ 0.39
SHMT1-201ENST00000316694 RASL11BQ9BPW5 248 aa17.47■□□□□ 0.39
SHMT1-201ENST00000316694 OTORQ9NRC9 128 aa17.47■□□□□ 0.39
SHMT1-201ENST00000316694 IGHV1-24A0A0C4DH33 117 aa17.47■□□□□ 0.39
SHMT1-201ENST00000316694 FAM120AOSQ5T036 256 aa17.47■□□□□ 0.39
SHMT1-201ENST00000316694 LINC00173Q6ZV60 143 aa17.46■□□□□ 0.39
SHMT1-201ENST00000316694 RPEQ96AT9 228 aa17.46■□□□□ 0.39
SHMT1-201ENST00000316694 GFRA4Q9GZZ7 299 aa17.46■□□□□ 0.39
SHMT1-201ENST00000316694 NGBQ9NPG2 151 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms