RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 TOMM20LQ6UXN7 152 aa10.92□□□□□ -0.66
LDLR-201ENST00000252444 C3orf56Q8N813 242 aa10.92□□□□□ -0.66
LDLR-201ENST00000252444 RHPN1-AS1Q9BWJ2 59 aa10.91□□□□□ -0.66
LDLR-201ENST00000252444 FOXC2Q99958 501 aa10.91□□□□□ -0.66
LDLR-201ENST00000252444 A0A0G2JRQ6 117 aa10.91□□□□□ -0.66
LDLR-201ENST00000252444 NSUN5P1Q3KNT7 163 aa10.91□□□□□ -0.66
LDLR-201ENST00000252444 GNB1LQ9BYB4 327 aa10.91□□□□□ -0.66
LDLR-201ENST00000252444 IGHV4-30-2A0A087WSY4 118 aa10.91□□□□□ -0.66
LDLR-201ENST00000252444 RBAKDNA6NC62 111 aa10.91□□□□□ -0.66
LDLR-201ENST00000252444 IGLV1-47P01700 117 aa10.91□□□□□ -0.66
LDLR-201ENST00000252444 OR2K2Q8NGT1 345 aa10.91□□□□□ -0.66
LDLR-201ENST00000252444 FAM186AA6NE01 2351 aa10.91□□□□□ -0.66
LDLR-201ENST00000252444 TP53BP1Q12888 1972 aaPredicted RBP10.91□□□□□ -0.66
LDLR-201ENST00000252444 CBLN2Q8IUK8 224 aa10.9□□□□□ -0.66
LDLR-201ENST00000252444 NXT2Q9NPJ8 142 aaKnown RBP10.9□□□□□ -0.66
LDLR-201ENST00000252444 IGKV1-39P01597 117 aa10.9□□□□□ -0.66
LDLR-201ENST00000252444 IGKV1D-39P04432 117 aa10.9□□□□□ -0.66
LDLR-201ENST00000252444 RNASE4P34096 147 aaKnown RBP10.9□□□□□ -0.66
LDLR-201ENST00000252444 ORMDL3Q8N138 153 aa10.9□□□□□ -0.66
LDLR-201ENST00000252444 NIT2Q9NQR4 276 aa10.9□□□□□ -0.66
LDLR-201ENST00000252444 TRAV25A0A0B4J276 109 aa10.9□□□□□ -0.66
LDLR-201ENST00000252444 TEX48A0A1B0GUV7 120 aa10.9□□□□□ -0.66
LDLR-201ENST00000252444 CD5LO43866 347 aa10.9□□□□□ -0.66
LDLR-201ENST00000252444 Q6ZRM9 215 aa10.9□□□□□ -0.66
LDLR-201ENST00000252444 IGHV3-48P01763 117 aa10.9□□□□□ -0.67
LDLR-201ENST00000252444 HNRNPA3P51991 378 aaKnown RBP10.9□□□□□ -0.67
LDLR-201ENST00000252444 ERASQ7Z444 233 aa10.9□□□□□ -0.67
LDLR-201ENST00000252444 TBX15Q96SF7 602 aa10.9□□□□□ -0.67
LDLR-201ENST00000252444 ODF3BA8MYP8 253 aa10.89□□□□□ -0.67
LDLR-201ENST00000252444 ZNF207O43670 478 aaKnown RBP10.89□□□□□ -0.67
LDLR-201ENST00000252444 ZNF134P52741 427 aa10.89□□□□□ -0.67
LDLR-201ENST00000252444 MST1LQ2TV78 715 aa10.89□□□□□ -0.67
LDLR-201ENST00000252444 LCNL1Q6ZST4 164 aa10.89□□□□□ -0.67
LDLR-201ENST00000252444 PACRGQ96M98 296 aaPredicted RBP10.89□□□□□ -0.67
LDLR-201ENST00000252444 PRDM13Q9H4Q3 707 aa10.89□□□□□ -0.67
LDLR-201ENST00000252444 DCAF16Q9NXF7 216 aa10.89□□□□□ -0.67
LDLR-201ENST00000252444 FAM181BA6NEQ2 426 aa10.89□□□□□ -0.67
LDLR-201ENST00000252444 NUDT3O95989 172 aa10.89□□□□□ -0.67
LDLR-201ENST00000252444 HTN1P15515 57 aa10.89□□□□□ -0.67
LDLR-201ENST00000252444 IL15RAQ13261 267 aa10.89□□□□□ -0.67
LDLR-201ENST00000252444 C2orf88Q9BSF0 95 aa10.89□□□□□ -0.67
LDLR-201ENST00000252444 MEGF9Q9H1U4 602 aa10.89□□□□□ -0.67
LDLR-201ENST00000252444 APOC4P55056 127 aa10.89□□□□□ -0.67
LDLR-201ENST00000252444 A0A1W2PRX2 142 aa10.89□□□□□ -0.67
LDLR-201ENST00000252444 TMEM183AQ8IXX5 376 aa10.89□□□□□ -0.67
LDLR-201ENST00000252444 TNRC6BQ9UPQ9 1833 aaKnown RBP10.89□□□□□ -0.67
LDLR-201ENST00000252444 PRELID3AQ96N28 172 aa10.88□□□□□ -0.67
LDLR-201ENST00000252444 CRYGCP07315 174 aa10.88□□□□□ -0.67
LDLR-201ENST00000252444 ORMDL2Q53FV1 153 aa10.88□□□□□ -0.67
LDLR-201ENST00000252444 OR10D4PQ8NGN7 298 aa10.88□□□□□ -0.67
LDLR-201ENST00000252444 K7EMT4 169 aa10.88□□□□□ -0.67
LDLR-201ENST00000252444 GATA2P23769 480 aaPredicted RBP10.88□□□□□ -0.67
LDLR-201ENST00000252444 ZNRD1Q9P1U0 126 aa10.88□□□□□ -0.67
LDLR-201ENST00000252444 TRBV20OR9-2A0A075B6H5 130 aa10.88□□□□□ -0.67
LDLR-201ENST00000252444 RHODO00212 210 aa10.88□□□□□ -0.67
LDLR-201ENST00000252444 DEFB112Q30KQ8 113 aa10.88□□□□□ -0.67
LDLR-201ENST00000252444 SCRT1Q9BWW7 348 aa10.88□□□□□ -0.67
LDLR-201ENST00000252444 WIPF3A6NGB9 483 aa10.88□□□□□ -0.67
LDLR-201ENST00000252444 FOLR2P14207 255 aa10.88□□□□□ -0.67
LDLR-201ENST00000252444 OR10J3Q5JRS4 329 aa10.88□□□□□ -0.67
LDLR-201ENST00000252444 DUX4L9Q6RFH8 374 aaPredicted RBP10.88□□□□□ -0.67
LDLR-201ENST00000252444 DNAJC13O75165 2243 aa10.87□□□□□ -0.67
LDLR-201ENST00000252444 IGHV7-4-1A0A0J9YVY3 117 aa10.87□□□□□ -0.67
LDLR-201ENST00000252444 CGB1A6NKQ9 187 aa10.87□□□□□ -0.67
LDLR-201ENST00000252444 PAX9P55771 341 aa10.87□□□□□ -0.67
LDLR-201ENST00000252444 PLP1P60201 277 aa10.87□□□□□ -0.67
LDLR-201ENST00000252444 ZNF329Q86UD4 541 aa10.87□□□□□ -0.67
LDLR-201ENST00000252444 RPP25LQ8N5L8 163 aaKnown RBP10.87□□□□□ -0.67
LDLR-201ENST00000252444 MPDZO75970 2070 aa10.87□□□□□ -0.67
LDLR-201ENST00000252444 PYYP10082 97 aa10.87□□□□□ -0.67
LDLR-201ENST00000252444 ISOC2Q96AB3 205 aa10.87□□□□□ -0.67
LDLR-201ENST00000252444 PRADC1Q9BSG0 188 aa10.87□□□□□ -0.67
LDLR-201ENST00000252444 TMEM238LA0A1B0GVL6 79 aa10.87□□□□□ -0.67
LDLR-201ENST00000252444 A6NJY4 79 aa10.87□□□□□ -0.67
LDLR-201ENST00000252444 CHCHD1Q96BP2 118 aaKnown RBP10.87□□□□□ -0.67
LDLR-201ENST00000252444 S4R3C0 116 aa10.87□□□□□ -0.67
LDLR-201ENST00000252444 IGLC7A0M8Q6 106 aa10.87□□□□□ -0.67
LDLR-201ENST00000252444 PMS2P5A8MQ11 134 aa10.86□□□□□ -0.67
LDLR-201ENST00000252444 H3BRM9 83 aa10.86□□□□□ -0.67
LDLR-201ENST00000252444 HOXA3O43365 443 aaPredicted RBP10.86□□□□□ -0.67
LDLR-201ENST00000252444 LEPROTL1O95214 131 aa10.86□□□□□ -0.67
LDLR-201ENST00000252444 LBHQ53QV2 105 aaPredicted RBP10.86□□□□□ -0.67
LDLR-201ENST00000252444 POLR3KQ9Y2Y1 108 aaPredicted RBP10.86□□□□□ -0.67
LDLR-201ENST00000252444 SCO1O75880 301 aa10.86□□□□□ -0.67
LDLR-201ENST00000252444 PDZD11Q5EBL8 140 aa10.86□□□□□ -0.67
LDLR-201ENST00000252444 TRBV24-1A0A075B6N3 115 aa10.86□□□□□ -0.67
LDLR-201ENST00000252444 CSN3P07498 182 aa10.86□□□□□ -0.67
LDLR-201ENST00000252444 PTTG1IPP53801 180 aa10.86□□□□□ -0.67
LDLR-201ENST00000252444 REC114Q7Z4M0 266 aa10.86□□□□□ -0.67
LDLR-201ENST00000252444 ST20Q9HBF5 79 aa10.86□□□□□ -0.67
LDLR-201ENST00000252444 EP300Q09472 2414 aaPredicted RBP10.86□□□□□ -0.67
LDLR-201ENST00000252444 CGB3P0DN86 165 aa10.86□□□□□ -0.67
LDLR-201ENST00000252444 CGB7P0DN87 165 aa10.86□□□□□ -0.67
LDLR-201ENST00000252444 WFDC12Q8WWY7 111 aa10.86□□□□□ -0.67
LDLR-201ENST00000252444 UBE2E2Q96LR5 201 aa10.86□□□□□ -0.67
LDLR-201ENST00000252444 SVILO95425 2214 aa10.86□□□□□ -0.67
LDLR-201ENST00000252444 IGHV3-35A0A0C4DH35 117 aa10.85□□□□□ -0.67
LDLR-201ENST00000252444 MYCNOSP40205 109 aa10.85□□□□□ -0.67
LDLR-201ENST00000252444 PAX2Q02962 417 aa10.85□□□□□ -0.67
LDLR-201ENST00000252444 C9orf66Q5T8R8 295 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms