RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 METTL15P1P0C7V9 234 aa15.49■□□□□ 0.07
CLN3-240ENST00000631023 RPL11P62913 178 aaKnown RBP15.49■□□□□ 0.07
CLN3-240ENST00000631023 ZNF90Q03938 601 aa15.49■□□□□ 0.07
CLN3-240ENST00000631023 AKR1C1Q04828 323 aa15.49■□□□□ 0.07
CLN3-240ENST00000631023 SBSPONQ8IVN8 264 aa15.49■□□□□ 0.07
CLN3-240ENST00000631023 DEFB125Q8N687 156 aa15.49■□□□□ 0.07
CLN3-240ENST00000631023 OR10P1Q8NGE3 313 aa15.49■□□□□ 0.07
CLN3-240ENST00000631023 PFDN2Q9UHV9 154 aa15.49■□□□□ 0.07
CLN3-240ENST00000631023 DFFBO76075 338 aa15.49■□□□□ 0.07
CLN3-240ENST00000631023 ACOT7LQ6ZUV0 252 aa15.49■□□□□ 0.07
CLN3-240ENST00000631023 RNF125Q96EQ8 232 aa15.49■□□□□ 0.07
CLN3-240ENST00000631023 RABAC1Q9UI14 185 aa15.49■□□□□ 0.07
CLN3-240ENST00000631023 DNAH9Q9NYC9 4486 aa15.48■□□□□ 0.07
CLN3-240ENST00000631023 IGKV3-7A0A075B6H7 116 aa15.48■□□□□ 0.07
CLN3-240ENST00000631023 SMCO3A2RU48 225 aa15.48■□□□□ 0.07
CLN3-240ENST00000631023 PMS2P5A8MQ11 134 aa15.48■□□□□ 0.07
CLN3-240ENST00000631023 GOSR2O14653 212 aa15.48■□□□□ 0.07
CLN3-240ENST00000631023 CFDP00746 253 aaPredicted RBP15.48■□□□□ 0.07
CLN3-240ENST00000631023 P2RY1P47900 373 aa15.48■□□□□ 0.07
CLN3-240ENST00000631023 EIF2B2P49770 351 aaKnown RBP15.48■□□□□ 0.07
CLN3-240ENST00000631023 CMC4P56277 68 aaPredicted RBP15.48■□□□□ 0.07
CLN3-240ENST00000631023 S100A10P60903 97 aa15.48■□□□□ 0.07
CLN3-240ENST00000631023 TMEM144Q7Z5S9 345 aa15.48■□□□□ 0.07
CLN3-240ENST00000631023 LILRB2Q8N423 598 aa15.48■□□□□ 0.07
CLN3-240ENST00000631023 SRD5A3Q9H8P0 318 aa15.48■□□□□ 0.07
CLN3-240ENST00000631023 U3KQE9 123 aa15.48■□□□□ 0.07
CLN3-240ENST00000631023 IGKV1OR2-108A0A075B7D4 117 aa15.47■□□□□ 0.07
CLN3-240ENST00000631023 PTTG1O95997 202 aa15.47■□□□□ 0.07
CLN3-240ENST00000631023 BCAP31P51572 246 aa15.47■□□□□ 0.07
CLN3-240ENST00000631023 DLK1P80370 383 aa15.47■□□□□ 0.07
CLN3-240ENST00000631023 IL15RAQ13261 267 aa15.47■□□□□ 0.07
CLN3-240ENST00000631023 USF2Q15853 346 aaPredicted RBP15.47■□□□□ 0.07
CLN3-240ENST00000631023 PBDC1Q9BVG4 233 aa15.47■□□□□ 0.07
CLN3-240ENST00000631023 WFDC10AQ9H1F0 79 aa15.47■□□□□ 0.07
CLN3-240ENST00000631023 MGAT4CQ9UBM8 478 aa15.47■□□□□ 0.07
CLN3-240ENST00000631023 FNDC10F2Z333 226 aa15.46■□□□□ 0.07
CLN3-240ENST00000631023 DNASE2O00115 360 aaPredicted RBP15.46■□□□□ 0.07
CLN3-240ENST00000631023 SSNA1O43805 119 aa15.46■□□□□ 0.07
CLN3-240ENST00000631023 NUP62P37198 522 aaPredicted RBP15.46■□□□□ 0.07
CLN3-240ENST00000631023 CYCSP99999 105 aaKnown RBP15.46■□□□□ 0.07
CLN3-240ENST00000631023 GBGT1Q8N5D6 347 aa15.46■□□□□ 0.07
CLN3-240ENST00000631023 FAM110AQ9BQ89 295 aa15.46■□□□□ 0.07
CLN3-240ENST00000631023 ZMAT4Q9H898 229 aa15.46■□□□□ 0.07
CLN3-240ENST00000631023 TFPI2P48307 235 aa15.45■□□□□ 0.06
CLN3-240ENST00000631023 CAV2P51636 162 aa15.45■□□□□ 0.06
CLN3-240ENST00000631023 AP2S1P53680 142 aaPredicted RBP15.45■□□□□ 0.06
CLN3-240ENST00000631023 OR2F1Q13607 317 aa15.45■□□□□ 0.06
CLN3-240ENST00000631023 RAB32Q13637 225 aa15.45■□□□□ 0.06
CLN3-240ENST00000631023 NPVFQ9HCQ7 196 aa15.45■□□□□ 0.06
CLN3-240ENST00000631023 TRAV2A0A0B4J234 112 aa15.45■□□□□ 0.06
CLN3-240ENST00000631023 HELTA6NFD8 242 aa15.45■□□□□ 0.06
CLN3-240ENST00000631023 LYZP61626 148 aa15.45■□□□□ 0.06
CLN3-240ENST00000631023 RRAS2P62070 204 aaPredicted RBP15.45■□□□□ 0.06
CLN3-240ENST00000631023 GGACTQ9BVM4 153 aa15.45■□□□□ 0.06
CLN3-240ENST00000631023 NMES1Q9C002 83 aa15.45■□□□□ 0.06
CLN3-240ENST00000631023 MS4A6AQ9H2W1 248 aa15.45■□□□□ 0.06
CLN3-240ENST00000631023 UBQLN2Q9UHD9 624 aa15.45■□□□□ 0.06
CLN3-240ENST00000631023 U3KQK5 164 aa15.45■□□□□ 0.06
CLN3-240ENST00000631023 CCNKO75909 580 aa15.44■□□□□ 0.06
CLN3-240ENST00000631023 SIX6O95475 246 aa15.44■□□□□ 0.06
CLN3-240ENST00000631023 RLN2P04090 185 aa15.44■□□□□ 0.06
CLN3-240ENST00000631023 C16orf54Q6UWD8 224 aa15.44■□□□□ 0.06
CLN3-240ENST00000631023 WFDC3Q8IUB2 231 aa15.44■□□□□ 0.06
CLN3-240ENST00000631023 BPIFCQ8NFQ6 507 aa15.44■□□□□ 0.06
CLN3-240ENST00000631023 BUB3O43684 328 aa15.43■□□□□ 0.06
CLN3-240ENST00000631023 DEDDO75618 318 aa15.43■□□□□ 0.06
CLN3-240ENST00000631023 HAGHQ16775 308 aa15.43■□□□□ 0.06
CLN3-240ENST00000631023 LINC00322Q6ZN03 302 aaPredicted RBP15.43■□□□□ 0.06
CLN3-240ENST00000631023 C11orf1Q9H5F2 150 aa15.43■□□□□ 0.06
CLN3-240ENST00000631023 RBMY1BA6NDE4 496 aaKnown RBP15.42■□□□□ 0.06
CLN3-240ENST00000631023 RBMY1EA6NEQ0 496 aaKnown RBP15.42■□□□□ 0.06
CLN3-240ENST00000631023 RBMY1DP0C7P1 496 aaKnown RBP15.42■□□□□ 0.06
CLN3-240ENST00000631023 S100A7P31151 101 aa15.42■□□□□ 0.06
CLN3-240ENST00000631023 ODF3L2Q3SX64 289 aa15.42■□□□□ 0.06
CLN3-240ENST00000631023 STXBP6Q8NFX7 210 aa15.42■□□□□ 0.06
CLN3-240ENST00000631023 LYRM2Q9NU23 88 aaPredicted RBP15.42■□□□□ 0.06
CLN3-240ENST00000631023 FAM24AA6NFZ4 105 aa15.41■□□□□ 0.06
CLN3-240ENST00000631023 TEPPQ6URK8 271 aa15.41■□□□□ 0.06
CLN3-240ENST00000631023 GLMPQ8WWB7 406 aa15.41■□□□□ 0.06
CLN3-240ENST00000631023 PPP1R14BQ96C90 147 aa15.41■□□□□ 0.06
CLN3-240ENST00000631023 TM2D3Q9BRN9 247 aa15.41■□□□□ 0.06
CLN3-240ENST00000631023 CST7O76096 145 aa15.41■□□□□ 0.06
CLN3-240ENST00000631023 SELENOTP62341 195 aa15.41■□□□□ 0.06
CLN3-240ENST00000631023 ARL16Q0P5N6 197 aa15.41■□□□□ 0.06
CLN3-240ENST00000631023 CYP2G1PQ6ZSU1 146 aa15.41■□□□□ 0.06
CLN3-240ENST00000631023 STX12Q86Y82 276 aa15.41■□□□□ 0.06
CLN3-240ENST00000631023 LOC102724200A0A096LPH7 203 aaPredicted RBP15.4■□□□□ 0.06
CLN3-240ENST00000631023 H2BFSP57053 126 aa15.4■□□□□ 0.06
CLN3-240ENST00000631023 SLC38A11Q08AI6 406 aa15.4■□□□□ 0.06
CLN3-240ENST00000631023 SIGLEC15Q6ZMC9 328 aa15.4■□□□□ 0.06
CLN3-240ENST00000631023 SPATA25Q9BR10 227 aa15.4■□□□□ 0.06
CLN3-240ENST00000631023 GGTLC1Q9BX51 225 aa15.4■□□□□ 0.06
CLN3-240ENST00000631023 FBXL17Q9UF56 701 aa15.4■□□□□ 0.06
CLN3-240ENST00000631023 SLC45A2Q9UMX9 530 aa15.4■□□□□ 0.06
CLN3-240ENST00000631023 GATA2P23769 480 aaPredicted RBP15.39■□□□□ 0.05
CLN3-240ENST00000631023 S100A11P31949 105 aa15.39■□□□□ 0.05
CLN3-240ENST00000631023 SULT1A1P50225 295 aa15.39■□□□□ 0.05
CLN3-240ENST00000631023 HBG1P69891 147 aa15.39■□□□□ 0.05
CLN3-240ENST00000631023 HBG2P69892 147 aa15.39■□□□□ 0.05
CLN3-240ENST00000631023 C1orf194Q5T5A4 169 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms