RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 ALDH3B2P48448 385 aa8.65□□□□□ -1.02
UPF3B-204ENST00000619445 TMBIM6P55061 237 aa8.65□□□□□ -1.02
UPF3B-204ENST00000619445 KLF9Q13886 244 aaPredicted RBP8.65□□□□□ -1.02
UPF3B-204ENST00000619445 FAAP20Q6NZ36 180 aa8.65□□□□□ -1.02
UPF3B-204ENST00000619445 SIGLEC15Q6ZMC9 328 aa8.65□□□□□ -1.02
UPF3B-204ENST00000619445 LGI3Q8N145 548 aa8.65□□□□□ -1.02
UPF3B-204ENST00000619445 DTD1Q8TEA8 209 aa8.65□□□□□ -1.02
UPF3B-204ENST00000619445 ACY3Q96HD9 319 aa8.65□□□□□ -1.02
UPF3B-204ENST00000619445 KNCNA6PVL3 124 aa8.64□□□□□ -1.03
UPF3B-204ENST00000619445 AKR1C4P17516 323 aa8.64□□□□□ -1.03
UPF3B-204ENST00000619445 C4BPBP20851 252 aa8.64□□□□□ -1.03
UPF3B-204ENST00000619445 HLA-DMBP28068 263 aa8.64□□□□□ -1.03
UPF3B-204ENST00000619445 S100A7P31151 101 aa8.64□□□□□ -1.03
UPF3B-204ENST00000619445 ID1P41134 155 aa8.64□□□□□ -1.03
UPF3B-204ENST00000619445 NKX2-1P43699 371 aaPredicted RBP8.64□□□□□ -1.03
UPF3B-204ENST00000619445 AP3S2P59780 193 aa8.64□□□□□ -1.03
UPF3B-204ENST00000619445 USF2Q15853 346 aaPredicted RBP8.64□□□□□ -1.03
UPF3B-204ENST00000619445 C1orf194Q5T5A4 169 aa8.64□□□□□ -1.03
UPF3B-204ENST00000619445 SPATA31B1PQ5VZV4 182 aa8.64□□□□□ -1.03
UPF3B-204ENST00000619445 CSNK1G2-AS1Q8NCQ2 148 aa8.64□□□□□ -1.03
UPF3B-204ENST00000619445 DEDD2Q8WXF8 326 aa8.64□□□□□ -1.03
UPF3B-204ENST00000619445 RNF125Q96EQ8 232 aa8.64□□□□□ -1.03
UPF3B-204ENST00000619445 SLC35E1Q96K37 410 aa8.64□□□□□ -1.03
UPF3B-204ENST00000619445 RNF126Q9BV68 326 aa8.64□□□□□ -1.03
UPF3B-204ENST00000619445 MCUBQ9NWR8 336 aa8.64□□□□□ -1.03
UPF3B-204ENST00000619445 TEX48A0A1B0GUV7 120 aa8.63□□□□□ -1.03
UPF3B-204ENST00000619445 TMEM189A5PLL7 270 aa8.63□□□□□ -1.03
UPF3B-204ENST00000619445 ZFP92A6NM28 416 aa8.63□□□□□ -1.03
UPF3B-204ENST00000619445 DEDDO75618 318 aa8.63□□□□□ -1.03
UPF3B-204ENST00000619445 CFDP00746 253 aaPredicted RBP8.63□□□□□ -1.03
UPF3B-204ENST00000619445 RBMY1A1P0DJD3 496 aaKnown RBP8.63□□□□□ -1.03
UPF3B-204ENST00000619445 RBMY1CP0DJD4 496 aa8.63□□□□□ -1.03
UPF3B-204ENST00000619445 PSG1P11464 419 aa8.63□□□□□ -1.03
UPF3B-204ENST00000619445 RAB11AP62491 216 aa8.63□□□□□ -1.03
UPF3B-204ENST00000619445 SPCS2Q15005 226 aa8.63□□□□□ -1.03
UPF3B-204ENST00000619445 RBMY1FQ15415 496 aaKnown RBP8.63□□□□□ -1.03
UPF3B-204ENST00000619445 DYNC2LI1Q8TCX1 351 aa8.63□□□□□ -1.03
UPF3B-204ENST00000619445 CLUHP3Q96NS8 147 aa8.63□□□□□ -1.03
UPF3B-204ENST00000619445 NEU1Q99519 415 aa8.63□□□□□ -1.03
UPF3B-204ENST00000619445 APLNQ9ULZ1 77 aa8.63□□□□□ -1.03
UPF3B-204ENST00000619445 X6R8D5 127 aa8.63□□□□□ -1.03
UPF3B-204ENST00000619445 FRAS1Q86XX4 4008 aa8.63□□□□□ -1.03
UPF3B-204ENST00000619445 SMIM9A6NGZ8 99 aa8.62□□□□□ -1.03
UPF3B-204ENST00000619445 H3BMM0 161 aa8.62□□□□□ -1.03
UPF3B-204ENST00000619445 MED6O75586 246 aa8.62□□□□□ -1.03
UPF3B-204ENST00000619445 SLC25A6P12236 298 aa8.62□□□□□ -1.03
UPF3B-204ENST00000619445 HLA-DRB4P13762 266 aa8.62□□□□□ -1.03
UPF3B-204ENST00000619445 RPP30P78346 268 aaKnown RBP8.62□□□□□ -1.03
UPF3B-204ENST00000619445 OR1S1Q8NH92 325 aa8.62□□□□□ -1.03
UPF3B-204ENST00000619445 TMEM170AQ8WVE7 144 aa8.62□□□□□ -1.03
UPF3B-204ENST00000619445 CIB3Q96Q77 187 aaPredicted RBP8.62□□□□□ -1.03
UPF3B-204ENST00000619445 HLA-DRB4X5D2U9 266 aa8.62□□□□□ -1.03
UPF3B-204ENST00000619445 FABP12A6NFH5 140 aa8.61□□□□□ -1.03
UPF3B-204ENST00000619445 SNRPGP15A8MWD9 76 aa8.61□□□□□ -1.03
UPF3B-204ENST00000619445 AMBPP02760 352 aa8.61□□□□□ -1.03
UPF3B-204ENST00000619445 PSMB3P49720 205 aa8.61□□□□□ -1.03
UPF3B-204ENST00000619445 MEOX2P50222 304 aa8.61□□□□□ -1.03
UPF3B-204ENST00000619445 SUPT4H1P63272 117 aaKnown RBP8.61□□□□□ -1.03
UPF3B-204ENST00000619445 TMEM128Q5BJH2 165 aa8.61□□□□□ -1.03
UPF3B-204ENST00000619445 Q6ZTC4 211 aa8.61□□□□□ -1.03
UPF3B-204ENST00000619445 PBDC1Q9BVG4 233 aa8.61□□□□□ -1.03
UPF3B-204ENST00000619445 RBKSQ9H477 322 aa8.61□□□□□ -1.03
UPF3B-204ENST00000619445 IGHV4-4A0A075B6R2 117 aa8.61□□□□□ -1.03
UPF3B-204ENST00000619445 NXPH3O95157 252 aa8.61□□□□□ -1.03
UPF3B-204ENST00000619445 P0DMU3 169 aa8.61□□□□□ -1.03
UPF3B-204ENST00000619445 FAM231AP0DMU4 169 aa8.61□□□□□ -1.03
UPF3B-204ENST00000619445 FAM231CP0DMU5 169 aa8.61□□□□□ -1.03
UPF3B-204ENST00000619445 GGNBP1Q5YKI7 109 aa8.61□□□□□ -1.03
UPF3B-204ENST00000619445 FOXI2Q6ZQN5 318 aa8.61□□□□□ -1.03
UPF3B-204ENST00000619445 LINC00336Q6ZUF6 198 aa8.61□□□□□ -1.03
UPF3B-204ENST00000619445 LYZL2Q7Z4W2 148 aa8.61□□□□□ -1.03
UPF3B-204ENST00000619445 COQ8AQ8NI60 647 aa8.61□□□□□ -1.03
UPF3B-204ENST00000619445 PPP1R14BQ96C90 147 aa8.61□□□□□ -1.03
UPF3B-204ENST00000619445 FAM210BQ96KR6 192 aa8.61□□□□□ -1.03
UPF3B-204ENST00000619445 TRGV9Q99603 122 aa8.61□□□□□ -1.03
UPF3B-204ENST00000619445 SLC25A21Q9BQT8 299 aaPredicted RBP8.61□□□□□ -1.03
UPF3B-204ENST00000619445 CLEC5AQ9NY25 188 aa8.61□□□□□ -1.03
UPF3B-204ENST00000619445 XCL2Q9UBD3 114 aa8.61□□□□□ -1.03
UPF3B-204ENST00000619445 SLC45A2Q9UMX9 530 aa8.61□□□□□ -1.03
UPF3B-204ENST00000619445 ELOA3CA0A087WX78 387 aaPredicted RBP8.6□□□□□ -1.03
UPF3B-204ENST00000619445 DEFB131BA0A096LNP1 70 aa8.6□□□□□ -1.03
UPF3B-204ENST00000619445 ISLRO14498 428 aa8.6□□□□□ -1.03
UPF3B-204ENST00000619445 SPART-AS1P0CW21 52 aa8.6□□□□□ -1.03
UPF3B-204ENST00000619445 GAMTQ14353 236 aa8.6□□□□□ -1.03
UPF3B-204ENST00000619445 ZNF705AQ6ZN79 300 aaPredicted RBP8.6□□□□□ -1.03
UPF3B-204ENST00000619445 LRTM2Q8N967 370 aa8.6□□□□□ -1.03
UPF3B-204ENST00000619445 SOSTQ9BQB4 213 aa8.6□□□□□ -1.03
UPF3B-204ENST00000619445 NDUFAF3Q9BU61 184 aa8.6□□□□□ -1.03
UPF3B-204ENST00000619445 SLIRPQ9GZT3 109 aaKnown RBP8.6□□□□□ -1.03
UPF3B-204ENST00000619445 TMED3Q9Y3Q3 217 aa8.6□□□□□ -1.03
UPF3B-204ENST00000619445 ZNF705FA8MVS1 300 aaPredicted RBP8.59□□□□□ -1.03
UPF3B-204ENST00000619445 ZNF705DP0CH99 300 aaPredicted RBP8.59□□□□□ -1.03
UPF3B-204ENST00000619445 ZNF705BP0CI00 300 aaPredicted RBP8.59□□□□□ -1.03
UPF3B-204ENST00000619445 TNFSF8P32971 234 aa8.59□□□□□ -1.03
UPF3B-204ENST00000619445 EBLN2Q6P2I7 272 aa8.59□□□□□ -1.03
UPF3B-204ENST00000619445 OR8I2Q8N0Y5 310 aa8.59□□□□□ -1.03
UPF3B-204ENST00000619445 TOMM5Q8N4H5 51 aa8.59□□□□□ -1.03
UPF3B-204ENST00000619445 MCFD2Q8NI22 146 aa8.59□□□□□ -1.03
UPF3B-204ENST00000619445 GPR82Q96P67 336 aa8.59□□□□□ -1.03
UPF3B-204ENST00000619445 SAV1Q9H4B6 383 aaPredicted RBP8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms