RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 Q8N7P7 452 aa8.35□□□□□ -1.07
VPS39-214ENST00000614932 IGLL5B9A064 214 aa8.35□□□□□ -1.07
VPS39-214ENST00000614932 K7ERJ3 54 aa8.35□□□□□ -1.07
VPS39-214ENST00000614932 RHODO00212 210 aa8.35□□□□□ -1.07
VPS39-214ENST00000614932 MT-CO3P00414 261 aa8.35□□□□□ -1.07
VPS39-214ENST00000614932 SRD5A1P18405 259 aa8.35□□□□□ -1.07
VPS39-214ENST00000614932 GCHFRP30047 84 aa8.35□□□□□ -1.07
VPS39-214ENST00000614932 PLGLB1Q02325 96 aa8.35□□□□□ -1.07
VPS39-214ENST00000614932 OR1C1Q15619 314 aa8.35□□□□□ -1.07
VPS39-214ENST00000614932 NHLRC2Q8NBF2 726 aa8.35□□□□□ -1.07
VPS39-214ENST00000614932 TMEM178AQ8NBL3 297 aa8.35□□□□□ -1.07
VPS39-214ENST00000614932 FOXB1Q99853 325 aa8.35□□□□□ -1.07
VPS39-214ENST00000614932 TPPP3Q9BW30 176 aa8.35□□□□□ -1.07
VPS39-214ENST00000614932 LIN7CQ9NUP9 197 aaKnown RBP8.35□□□□□ -1.07
VPS39-214ENST00000614932 DCHS1Q96JQ0 3298 aa8.34□□□□□ -1.07
VPS39-214ENST00000614932 FNDC10F2Z333 226 aa8.34□□□□□ -1.07
VPS39-214ENST00000614932 CEACAM4O75871 244 aa8.34□□□□□ -1.07
VPS39-214ENST00000614932 IGLV3-1P01715 115 aa8.34□□□□□ -1.07
VPS39-214ENST00000614932 SCTP09683 121 aa8.34□□□□□ -1.07
VPS39-214ENST00000614932 FKBP2P26885 142 aaKnown RBP8.34□□□□□ -1.07
VPS39-214ENST00000614932 MOGAT3Q86VF5 341 aa8.34□□□□□ -1.07
VPS39-214ENST00000614932 BCL6BQ8N143 479 aaPredicted RBP8.34□□□□□ -1.07
VPS39-214ENST00000614932 SPTSSAQ969W0 71 aa8.34□□□□□ -1.07
VPS39-214ENST00000614932 TMEM8BA6NDV4 472 aa8.34□□□□□ -1.07
VPS39-214ENST00000614932 CAMPP49913 170 aa8.34□□□□□ -1.07
VPS39-214ENST00000614932 ZNF766Q5HY98 468 aa8.34□□□□□ -1.07
VPS39-214ENST00000614932 Q6ZS92 163 aa8.34□□□□□ -1.07
VPS39-214ENST00000614932 NUP35Q8NFH5 326 aa8.34□□□□□ -1.07
VPS39-214ENST00000614932 PRRG4Q9BZD6 226 aa8.34□□□□□ -1.07
VPS39-214ENST00000614932 DEFB127Q9H1M4 99 aa8.34□□□□□ -1.07
VPS39-214ENST00000614932 ATP23Q9Y6H3 246 aa8.34□□□□□ -1.07
VPS39-214ENST00000614932 SPTBN2O15020 2390 aa8.33□□□□□ -1.08
VPS39-214ENST00000614932 IGKV1-27A0A075B6S5 117 aa8.33□□□□□ -1.08
VPS39-214ENST00000614932 FOXA3P55318 350 aaPredicted RBP8.33□□□□□ -1.08
VPS39-214ENST00000614932 FAM27BQ5VT28 67 aa8.33□□□□□ -1.08
VPS39-214ENST00000614932 AMTNQ6UX39 209 aa8.33□□□□□ -1.08
VPS39-214ENST00000614932 PIGCQ92535 297 aa8.33□□□□□ -1.08
VPS39-214ENST00000614932 FAM168AQ92567 244 aa8.33□□□□□ -1.08
VPS39-214ENST00000614932 TMEM126AQ9H061 195 aa8.33□□□□□ -1.08
VPS39-214ENST00000614932 MAP1LC3AQ9H492 121 aa8.33□□□□□ -1.08
VPS39-214ENST00000614932 TRAV5A0A0B4J249 113 aa8.33□□□□□ -1.08
VPS39-214ENST00000614932 SMIM9A6NGZ8 99 aa8.33□□□□□ -1.08
VPS39-214ENST00000614932 SRSF1Q07955 248 aaKnown RBP eCLIP8.33□□□□□ -1.08
VPS39-214ENST00000614932 SSBP3Q9BWW4 388 aaPredicted RBP8.33□□□□□ -1.08
VPS39-214ENST00000614932 IDI2-AS1Q9NZ38 188 aa8.33□□□□□ -1.08
VPS39-214ENST00000614932 WDR83OSQ9Y284 106 aa8.33□□□□□ -1.08
VPS39-214ENST00000614932 MGAQ8IWI9 3026 aa8.32□□□□□ -1.08
VPS39-214ENST00000614932 TRBV20-1A0A075B6N2 111 aa8.32□□□□□ -1.08
VPS39-214ENST00000614932 SYNGR3O43761 229 aa8.32□□□□□ -1.08
VPS39-214ENST00000614932 MRPL33O75394 65 aaKnown RBP8.32□□□□□ -1.08
VPS39-214ENST00000614932 FCN3O75636 299 aa8.32□□□□□ -1.08
VPS39-214ENST00000614932 SLC25A5P05141 298 aaKnown RBP8.32□□□□□ -1.08
VPS39-214ENST00000614932 PPIFP30405 207 aaKnown RBP8.32□□□□□ -1.08
VPS39-214ENST00000614932 RPS16P62249 146 aaKnown RBP8.32□□□□□ -1.08
VPS39-214ENST00000614932 ATP5L2Q7Z4Y8 100 aa8.32□□□□□ -1.08
VPS39-214ENST00000614932 TTTY12Q9BZ98 90 aa8.32□□□□□ -1.08
VPS39-214ENST00000614932 NHP2Q9NX24 153 aaKnown RBP8.32□□□□□ -1.08
VPS39-214ENST00000614932 SVILO95425 2214 aa8.32□□□□□ -1.08
VPS39-214ENST00000614932 IGHV3-64DA0A0J9YX35 117 aa8.32□□□□□ -1.08
VPS39-214ENST00000614932 ZNF503-AS2A6NEH8 195 aa8.32□□□□□ -1.08
VPS39-214ENST00000614932 IGLV2-8P01709 118 aa8.32□□□□□ -1.08
VPS39-214ENST00000614932 TTC32Q5I0X7 151 aa8.32□□□□□ -1.08
VPS39-214ENST00000614932 NFE4Q86UQ8 179 aa8.32□□□□□ -1.08
VPS39-214ENST00000614932 ZNF747Q9BV97 191 aa8.32□□□□□ -1.08
VPS39-214ENST00000614932 SPRY4Q9C004 299 aa8.32□□□□□ -1.08
VPS39-214ENST00000614932 IL36RNQ9UBH0 155 aa8.32□□□□□ -1.08
VPS39-214ENST00000614932 F11RQ9Y624 299 aaKnown RBP8.32□□□□□ -1.08
VPS39-214ENST00000614932 A8MWL6 223 aa8.31□□□□□ -1.08
VPS39-214ENST00000614932 NCR2O95944 276 aa8.31□□□□□ -1.08
VPS39-214ENST00000614932 IFITM1P13164 125 aa8.31□□□□□ -1.08
VPS39-214ENST00000614932 GAGE2BQ13066 116 aa8.31□□□□□ -1.08
VPS39-214ENST00000614932 GAGE2EQ4V326 116 aa8.31□□□□□ -1.08
VPS39-214ENST00000614932 C8orf46Q8TAG6 207 aa8.31□□□□□ -1.08
VPS39-214ENST00000614932 GAGE2DQ9UEU5 116 aa8.31□□□□□ -1.08
VPS39-214ENST00000614932 TIMM8BQ9Y5J9 83 aaPredicted RBP8.31□□□□□ -1.08
VPS39-214ENST00000614932 MAP1BP46821 2468 aaKnown RBP8.31□□□□□ -1.08
VPS39-214ENST00000614932 NBEAQ8NFP9 2946 aa8.31□□□□□ -1.08
VPS39-214ENST00000614932 RIF1Q5UIP0 2472 aaKnown RBP8.31□□□□□ -1.08
VPS39-214ENST00000614932 KIR2DS1A0A191URI9 304 aa8.31□□□□□ -1.08
VPS39-214ENST00000614932 HSPB6O14558 160 aa8.31□□□□□ -1.08
VPS39-214ENST00000614932 WISP2O76076 250 aa8.31□□□□□ -1.08
VPS39-214ENST00000614932 BCL3P20749 454 aa8.31□□□□□ -1.08
VPS39-214ENST00000614932 CRYGSP22914 178 aa8.31□□□□□ -1.08
VPS39-214ENST00000614932 KIR2DS1Q14954 304 aa8.31□□□□□ -1.08
VPS39-214ENST00000614932 MEIG1Q5JSS6 88 aa8.31□□□□□ -1.08
VPS39-214ENST00000614932 Q6ZR03 302 aa8.31□□□□□ -1.08
VPS39-214ENST00000614932 OR2H1Q9GZK4 316 aa8.31□□□□□ -1.08
VPS39-214ENST00000614932 RAB9BQ9NP90 201 aa8.31□□□□□ -1.08
VPS39-214ENST00000614932 IGKV1-12A0A0C4DH73 117 aa8.3□□□□□ -1.08
VPS39-214ENST00000614932 C5orf49A4QMS7 147 aa8.3□□□□□ -1.08
VPS39-214ENST00000614932 FAM90A18PA6NE21 464 aa8.3□□□□□ -1.08
VPS39-214ENST00000614932 FAM90A16PA6NEW6 464 aa8.3□□□□□ -1.08
VPS39-214ENST00000614932 FAM90A8PA6NJQ4 464 aa8.3□□□□□ -1.08
VPS39-214ENST00000614932 FAM90A9PA6NNJ1 464 aa8.3□□□□□ -1.08
VPS39-214ENST00000614932 IGKV1D-12P01611 117 aa8.3□□□□□ -1.08
VPS39-214ENST00000614932 PLA2G2CQ5R387 149 aa8.3□□□□□ -1.08
VPS39-214ENST00000614932 TMEM78Q5T7P6 136 aa8.3□□□□□ -1.08
VPS39-214ENST00000614932 FAM159AQ6UWV7 190 aa8.3□□□□□ -1.08
VPS39-214ENST00000614932 PCP2Q8IVA1 136 aa8.3□□□□□ -1.08
VPS39-214ENST00000614932 OR5AN1Q8NGI8 311 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms