RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 MBP02144 154 aa8.28□□□□□ -1.08
SS18-213ENST00000579640 PSG1P11464 419 aa8.28□□□□□ -1.08
SS18-213ENST00000579640 MIC13Q5XKP0 118 aa8.28□□□□□ -1.08
SS18-213ENST00000579640 KLHL30-AS1Q8NEE0 82 aa8.28□□□□□ -1.08
SS18-213ENST00000579640 OR51G1Q8NGK1 321 aa8.28□□□□□ -1.08
SS18-213ENST00000579640 SH3BGRL3Q9H299 93 aa8.28□□□□□ -1.08
SS18-213ENST00000579640 UMAD1C9J7I0 102 aa8.27□□□□□ -1.09
SS18-213ENST00000579640 BMPR1BO00238 502 aa8.27□□□□□ -1.09
SS18-213ENST00000579640 NDUFA4O00483 81 aa8.27□□□□□ -1.09
SS18-213ENST00000579640 TRBV12-3P01733 135 aa8.27□□□□□ -1.09
SS18-213ENST00000579640 LINC00869P0C866 280 aa8.27□□□□□ -1.09
SS18-213ENST00000579640 ZP3P21754 424 aa8.27□□□□□ -1.09
SS18-213ENST00000579640 PLP1P60201 277 aa8.27□□□□□ -1.09
SS18-213ENST00000579640 ACOT6Q3I5F7 207 aaPredicted RBP8.27□□□□□ -1.09
SS18-213ENST00000579640 FFAR4Q5NUL3 377 aa8.27□□□□□ -1.09
SS18-213ENST00000579640 TEX261Q6UWH6 196 aa8.27□□□□□ -1.09
SS18-213ENST00000579640 NDUFA11Q86Y39 141 aa8.27□□□□□ -1.09
SS18-213ENST00000579640 C11orf44Q8N8P7 122 aa8.27□□□□□ -1.09
SS18-213ENST00000579640 TMED6Q8WW62 240 aa8.27□□□□□ -1.09
SS18-213ENST00000579640 IFNA7P01567 189 aa8.26□□□□□ -1.09
SS18-213ENST00000579640 GATA2P23769 480 aaPredicted RBP8.26□□□□□ -1.09
SS18-213ENST00000579640 RAB5CP51148 216 aa8.26□□□□□ -1.09
SS18-213ENST00000579640 KRTAP10-3P60369 221 aa8.26□□□□□ -1.09
SS18-213ENST00000579640 RPEL1Q2QD12 228 aa8.26□□□□□ -1.09
SS18-213ENST00000579640 AKR1C8PQ5T2L2 129 aa8.26□□□□□ -1.09
SS18-213ENST00000579640 TMEM182Q6ZP80 229 aaPredicted RBP8.26□□□□□ -1.09
SS18-213ENST00000579640 GPHB5Q86YW7 130 aa8.26□□□□□ -1.09
SS18-213ENST00000579640 OR1L4Q8NGR5 311 aa8.26□□□□□ -1.09
SS18-213ENST00000579640 PFDN5Q99471 154 aa8.26□□□□□ -1.09
SS18-213ENST00000579640 PUS1Q9Y606 427 aaKnown RBP eCLIP8.26□□□□□ -1.09
SS18-213ENST00000579640 IGHV4OR15-8A0A075B7B6 117 aa8.26□□□□□ -1.09
SS18-213ENST00000579640 A0A087WW49 117 aa8.26□□□□□ -1.09
SS18-213ENST00000579640 ELOA3CA0A087WX78 387 aaPredicted RBP8.26□□□□□ -1.09
SS18-213ENST00000579640 WI2-2373I1.2A0A1W2PRP0 233 aa8.26□□□□□ -1.09
SS18-213ENST00000579640 LINC01619G3V211 115 aa8.26□□□□□ -1.09
SS18-213ENST00000579640 M6PRP20645 277 aa8.26□□□□□ -1.09
SS18-213ENST00000579640 S100A7P31151 101 aa8.26□□□□□ -1.09
SS18-213ENST00000579640 ELLP55199 621 aaPredicted RBP8.26□□□□□ -1.09
SS18-213ENST00000579640 FAM106AQ4KMX7 169 aa8.26□□□□□ -1.09
SS18-213ENST00000579640 TOMM20LQ6UXN7 152 aa8.26□□□□□ -1.09
SS18-213ENST00000579640 C18orf65Q6ZTR6 163 aa8.26□□□□□ -1.09
SS18-213ENST00000579640 S100A7AQ86SG5 101 aa8.26□□□□□ -1.09
SS18-213ENST00000579640 OR1N2Q8NGR9 330 aa8.26□□□□□ -1.09
SS18-213ENST00000579640 GATAD1Q8WUU5 269 aa8.26□□□□□ -1.09
SS18-213ENST00000579640 DPF1Q92782 380 aa8.26□□□□□ -1.09
SS18-213ENST00000579640 RNF125Q96EQ8 232 aa8.26□□□□□ -1.09
SS18-213ENST00000579640 RNF2Q99496 336 aa8.26□□□□□ -1.09
SS18-213ENST00000579640 CITED1Q99966 193 aa8.26□□□□□ -1.09
SS18-213ENST00000579640 COX7A2P2O60397 106 aa8.25□□□□□ -1.09
SS18-213ENST00000579640 HYPMO75409 117 aa8.25□□□□□ -1.09
SS18-213ENST00000579640 YIF1AO95070 293 aa8.25□□□□□ -1.09
SS18-213ENST00000579640 IL4P05112 153 aa8.25□□□□□ -1.09
SS18-213ENST00000579640 LYZP61626 148 aa8.25□□□□□ -1.09
SS18-213ENST00000579640 TMEM41BQ5BJD5 291 aa8.25□□□□□ -1.09
SS18-213ENST00000579640 ALKAL2Q6UX46 152 aa8.25□□□□□ -1.09
SS18-213ENST00000579640 DPPA3Q6W0C5 159 aa8.25□□□□□ -1.09
SS18-213ENST00000579640 C8orf86Q6ZUL3 223 aa8.25□□□□□ -1.09
SS18-213ENST00000579640 ZNF680Q8NEM1 530 aa8.25□□□□□ -1.09
SS18-213ENST00000579640 OR11H1Q8NG94 326 aa8.25□□□□□ -1.09
SS18-213ENST00000579640 ZFAND3Q9H8U3 227 aa8.25□□□□□ -1.09
SS18-213ENST00000579640 DNAJC4Q9NNZ3 241 aa8.25□□□□□ -1.09
SS18-213ENST00000579640 RFNGQ9Y644 331 aa8.25□□□□□ -1.09
SS18-213ENST00000579640 ATRQ13535 2644 aa8.25□□□□□ -1.09
SS18-213ENST00000579640 A0A1W2PRX2 142 aa8.24□□□□□ -1.09
SS18-213ENST00000579640 ADARB2-AS1A8MUL3 147 aa8.24□□□□□ -1.09
SS18-213ENST00000579640 HOXD3P31249 432 aaPredicted RBP8.24□□□□□ -1.09
SS18-213ENST00000579640 SULT1A2P50226 295 aa8.24□□□□□ -1.09
SS18-213ENST00000579640 ZNF767PQ75MW2 155 aa8.24□□□□□ -1.09
SS18-213ENST00000579640 OR1B1Q8NGR6 318 aa8.24□□□□□ -1.09
SS18-213ENST00000579640 LRRC20Q8TCA0 184 aa8.24□□□□□ -1.09
SS18-213ENST00000579640 RNF141Q8WVD5 230 aa8.24□□□□□ -1.09
SS18-213ENST00000579640 TMEM190Q8WZ59 177 aa8.24□□□□□ -1.09
SS18-213ENST00000579640 ZNF414Q96IQ9 312 aa8.24□□□□□ -1.09
SS18-213ENST00000579640 ZNF747Q9BV97 191 aa8.24□□□□□ -1.09
SS18-213ENST00000579640 UBQLN2Q9UHD9 624 aa8.24□□□□□ -1.09
SS18-213ENST00000579640 PFDN2Q9UHV9 154 aa8.24□□□□□ -1.09
SS18-213ENST00000579640 IGHV3-35A0A0C4DH35 117 aa8.24□□□□□ -1.09
SS18-213ENST00000579640 LGALS9O00182 355 aa8.24□□□□□ -1.09
SS18-213ENST00000579640 OR5G3P0C626 314 aa8.24□□□□□ -1.09
SS18-213ENST00000579640 ORM2P19652 201 aa8.24□□□□□ -1.09
SS18-213ENST00000579640 RAB2AP61019 212 aa8.24□□□□□ -1.09
SS18-213ENST00000579640 RHOBP62745 196 aa8.24□□□□□ -1.09
SS18-213ENST00000579640 FHL3Q13643 280 aa8.24□□□□□ -1.09
SS18-213ENST00000579640 DEFB136Q30KP8 78 aa8.24□□□□□ -1.09
SS18-213ENST00000579640 C10orf113Q5VZT2 155 aa8.24□□□□□ -1.09
SS18-213ENST00000579640 C12orf54Q6X4T0 127 aa8.24□□□□□ -1.09
SS18-213ENST00000579640 REC114Q7Z4M0 266 aa8.24□□□□□ -1.09
SS18-213ENST00000579640 C1QL4Q86Z23 238 aa8.24□□□□□ -1.09
SS18-213ENST00000579640 OR10G4Q8NGN3 311 aa8.24□□□□□ -1.09
SS18-213ENST00000579640 OR10G9Q8NGN4 311 aa8.24□□□□□ -1.09
SS18-213ENST00000579640 OR10G7Q8NGN6 311 aa8.24□□□□□ -1.09
SS18-213ENST00000579640 RAX2Q96IS3 184 aa8.24□□□□□ -1.09
SS18-213ENST00000579640 PBDC1Q9BVG4 233 aa8.24□□□□□ -1.09
SS18-213ENST00000579640 MRPL32Q9BYC8 188 aaKnown RBP8.24□□□□□ -1.09
SS18-213ENST00000579640 RPRMQ9NS64 109 aa8.24□□□□□ -1.09
SS18-213ENST00000579640 MRPL27Q9P0M9 148 aaKnown RBP8.24□□□□□ -1.09
SS18-213ENST00000579640 RABAC1Q9UI14 185 aa8.24□□□□□ -1.09
SS18-213ENST00000579640 RNF24Q9Y225 148 aa8.24□□□□□ -1.09
SS18-213ENST00000579640 HIGD1AQ9Y241 93 aa8.24□□□□□ -1.09
SS18-213ENST00000579640 K7EMT4 169 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms