RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 IGKV1D-43A0A0B4J1Z2 117 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 M0R2Z0 102 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 APCSP02743 223 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 IFI27P40305 119 aaPredicted RBP2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 FXYD7P58549 80 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 B3GALT5-AS1P59052 145 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 VWC2Q2TAL6 325 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 LINC01590Q5TEZ4 76 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 DPPA3Q6W0C5 159 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 ZNF818PQ6ZRF7 136 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 STPG2Q8N412 459 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 WFDC11Q8NEX6 87 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 ZFAND2BQ8WV99 257 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 TMEM37Q8WXS4 190 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 TMEM70Q9BUB7 260 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 TM2D2Q9BX73 214 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 SLC35B3Q9H1N7 401 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 GSX1Q9H4S2 264 aaPredicted RBP2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 PRR13Q9NZ81 148 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 ZFC3H1O60293 1989 aaKnown RBP2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 A0A1B0GWJ7 208 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 RBFOX3A6NFN3 312 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 LY6G6DO95868 133 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 CLPSP04118 112 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 NAT1P18440 290 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 TDGF1P3P51864 188 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 BAK1Q16611 211 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 FOXB2Q5VYV0 432 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 FAM219BQ5XKK7 198 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 XAF1Q6GPH4 301 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 FGFBP3Q8TAT2 258 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 VN1R17PQ8TDU5 208 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 SPSB4Q96A44 273 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 LINC00477Q96M19 166 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 VCX2Q9H322 139 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 SELENOKQ9Y6D0 94 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 SHISA3A0PJX4 238 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 FAM74A7A6NL05 159 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 SRRM4A7MD48 611 aaKnown RBP2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 TMEM14DPA8MWL7 114 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 LINC00587B1AMM8 73 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 ATP6V0E1O15342 81 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 ZNF497Q6ZNH5 498 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 OR5A1Q8NGJ0 315 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 Q8TCH9 128 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 TBX15Q96SF7 602 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 SRSF8Q9BRL6 282 aaKnown RBP2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 JPT2Q9H910 190 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 ST20Q9HBF5 79 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 FUT9Q9Y231 359 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 RFNGQ9Y644 331 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 FANCMQ8IYD8 2048 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 TRBV5-7A0A0A0MS05 114 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 TRBV7-9A0A0J9YWB2 115 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 TNFRSF6BO95407 300 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 CD55P08174 381 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 ATP6V0CP27449 155 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 FHITP49789 147 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 S100A7L2Q5SY68 101 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 TMEM170BQ5T4T1 132 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 SPATA31B1PQ5VZV4 182 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 OR11H2Q8NH07 326 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 PGLYRP4Q96LB8 373 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 CST9LQ9H4G1 147 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 PLSCR2Q9NRY7 297 aa2.39□□□□□ -2.03
SMCHD1-203ENST00000577880 TRAV12-3A0A0B4J271 114 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 GRIFINA4D1Z8 144 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 IFITM10A6NMD0 228 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 H3BUA1 57 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 RHODO00212 210 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 PHOX2AO14813 284 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 PAX4O43316 350 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 C1QBP02746 253 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 SEC11AP67812 179 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 NDPQ00604 133 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 FOXE3Q13461 319 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 C4orf48Q5BLP8 95 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 HIST2H2BCQ6DN03 193 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 MORN3Q6PF18 240 aaPredicted RBP2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 C8orf86Q6ZUL3 223 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 LHFPL4Q7Z7J7 247 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 CD177Q8N6Q3 437 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 GPHA2Q96T91 129 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 SPATA25Q9BR10 227 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 TM2D1Q9BX74 207 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 OTORQ9NRC9 128 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 ZFP30Q9Y2G7 519 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 IGF2RP11717 2491 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 TRBV6-7A0A0A0MS04 114 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 TMEM218A2RU14 115 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 LINC00862A6NCI5 91 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 GGTLC3B5MD39 225 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 TFF1P04155 84 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 IGFBP2P18065 325 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 CRYBB3P26998 211 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 DUTP33316 252 aaKnown RBP2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 UBE2BP63146 152 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 FBXL19-AS1Q494R0 122 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 Q6AWC8 147 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 FER1L6-AS1Q8NA97 138 aa2.38□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 122.6 ms