RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 PSMG4Q5JS54 123 aa15.19■□□□□ 0.02
VPS53-216ENST00000574029 PRSS54Q6PEW0 395 aa15.19■□□□□ 0.02
VPS53-216ENST00000574029 Q8WTZ3 238 aa15.19■□□□□ 0.02
VPS53-216ENST00000574029 CTNNBIP1Q9NSA3 81 aaPredicted RBP15.19■□□□□ 0.02
VPS53-216ENST00000574029 CELA1Q9UNI1 258 aa15.19■□□□□ 0.02
VPS53-216ENST00000574029 KCNIP3Q9Y2W7 256 aa15.19■□□□□ 0.02
VPS53-216ENST00000574029 RYR1P21817 5038 aa15.19■□□□□ 0.02
VPS53-216ENST00000574029 NAP1L6A6NFF2 107 aa15.18■□□□□ 0.02
VPS53-216ENST00000574029 SLC25A4P12235 298 aa15.18■□□□□ 0.02
VPS53-216ENST00000574029 C12orf74Q32Q52 190 aa15.18■□□□□ 0.02
VPS53-216ENST00000574029 C2orf83Q53S99 150 aa15.18■□□□□ 0.02
VPS53-216ENST00000574029 TRIQKQ629K1 86 aa15.18■□□□□ 0.02
VPS53-216ENST00000574029 LINC00336Q6ZUF6 198 aa15.18■□□□□ 0.02
VPS53-216ENST00000574029 RNASEH2CQ8TDP1 164 aaKnown RBP15.18■□□□□ 0.02
VPS53-216ENST00000574029 TMEM56-RWDD3S4R434 201 aa15.18■□□□□ 0.02
VPS53-216ENST00000574029 AMBPP02760 352 aa15.17■□□□□ 0.02
VPS53-216ENST00000574029 IL7P13232 177 aa15.17■□□□□ 0.02
VPS53-216ENST00000574029 OR10J1P30954 320 aa15.17■□□□□ 0.02
VPS53-216ENST00000574029 INPP1P49441 399 aa15.17■□□□□ 0.02
VPS53-216ENST00000574029 RND2P52198 227 aa15.17■□□□□ 0.02
VPS53-216ENST00000574029 LHFPL5Q8TAF8 219 aa15.17■□□□□ 0.02
VPS53-216ENST00000574029 SEPSECSQ9HD40 501 aaKnown RBP15.17■□□□□ 0.02
VPS53-216ENST00000574029 HEYLQ9NQ87 328 aaPredicted RBP15.17■□□□□ 0.02
VPS53-216ENST00000574029 SUPT4H1P63272 117 aaKnown RBP15.16■□□□□ 0.02
VPS53-216ENST00000574029 USF2Q15853 346 aaPredicted RBP15.16■□□□□ 0.02
VPS53-216ENST00000574029 SELENOHQ8IZQ5 122 aaKnown RBP15.16■□□□□ 0.02
VPS53-216ENST00000574029 SLC24A4Q8NFF2 622 aa15.16■□□□□ 0.02
VPS53-216ENST00000574029 RBPMSQ93062 196 aaKnown RBP15.16■□□□□ 0.02
VPS53-216ENST00000574029 IL22RA2Q969J5 263 aa15.16■□□□□ 0.02
VPS53-216ENST00000574029 C1QTNF4Q9BXJ3 329 aa15.16■□□□□ 0.02
VPS53-216ENST00000574029 DEFB131BA0A096LNP1 70 aa15.15■□□□□ 0.02
VPS53-216ENST00000574029 FAM90A26D6RGX4 464 aa15.15■□□□□ 0.02
VPS53-216ENST00000574029 AKR1C4P17516 323 aa15.15■□□□□ 0.02
VPS53-216ENST00000574029 ZNF767PQ75MW2 155 aa15.15■□□□□ 0.02
VPS53-216ENST00000574029 TMEM170AQ8WVE7 144 aa15.15■□□□□ 0.02
VPS53-216ENST00000574029 C7orf50Q9BRJ6 194 aaKnown RBP15.15■□□□□ 0.02
VPS53-216ENST00000574029 CACNG5Q9UF02 275 aa15.15■□□□□ 0.02
VPS53-216ENST00000574029 A0A1B0GVY2 172 aa15.14■□□□□ 0.01
VPS53-216ENST00000574029 H3BMM0 161 aa15.14■□□□□ 0.01
VPS53-216ENST00000574029 BUB3O43684 328 aa15.14■□□□□ 0.01
VPS53-216ENST00000574029 IL4P05112 153 aa15.14■□□□□ 0.01
VPS53-216ENST00000574029 NUTF2P61970 127 aaKnown RBP15.14■□□□□ 0.01
VPS53-216ENST00000574029 SNRPD3P62318 126 aaKnown RBP15.14■□□□□ 0.01
VPS53-216ENST00000574029 TMEM128Q5BJH2 165 aa15.14■□□□□ 0.01
VPS53-216ENST00000574029 ETFRF1Q6IPR1 90 aa15.14■□□□□ 0.01
VPS53-216ENST00000574029 S100ZQ8WXG8 99 aa15.14■□□□□ 0.01
VPS53-216ENST00000574029 GPR146Q96CH1 333 aa15.14■□□□□ 0.01
VPS53-216ENST00000574029 NRN1Q9NPD7 142 aa15.14■□□□□ 0.01
VPS53-216ENST00000574029 PTTG2Q9NZH5 202 aa15.14■□□□□ 0.01
VPS53-216ENST00000574029 CENPXA8MT69 81 aa15.13■□□□□ 0.01
VPS53-216ENST00000574029 NXPH3O95157 252 aa15.13■□□□□ 0.01
VPS53-216ENST00000574029 TOMM40O96008 361 aa15.13■□□□□ 0.01
VPS53-216ENST00000574029 KIAA1109Q2LD37 5005 aa15.13■□□□□ 0.01
VPS53-216ENST00000574029 SIGLEC15Q6ZMC9 328 aa15.13■□□□□ 0.01
VPS53-216ENST00000574029 POM121L12Q8N7R1 296 aa15.13■□□□□ 0.01
VPS53-216ENST00000574029 XCL2Q9UBD3 114 aa15.13■□□□□ 0.01
VPS53-216ENST00000574029 CEBPZOSA8MTT3 80 aa15.12■□□□□ 0.01
VPS53-216ENST00000574029 P0DMU3 169 aa15.12■□□□□ 0.01
VPS53-216ENST00000574029 FAM231AP0DMU4 169 aa15.12■□□□□ 0.01
VPS53-216ENST00000574029 FAM231CP0DMU5 169 aa15.12■□□□□ 0.01
VPS53-216ENST00000574029 ANXA3P12429 323 aa15.12■□□□□ 0.01
VPS53-216ENST00000574029 TMEM268Q5VZI3 342 aa15.12■□□□□ 0.01
VPS53-216ENST00000574029 NPIPB3Q92617 1050 aa15.12■□□□□ 0.01
VPS53-216ENST00000574029 CCDC32Q9BV29 185 aa15.12■□□□□ 0.01
VPS53-216ENST00000574029 SCRT1Q9BWW7 348 aa15.12■□□□□ 0.01
VPS53-216ENST00000574029 PIGBOS1A0A0B4J2F0 54 aa15.11■□□□□ 0.01
VPS53-216ENST00000574029 PLA2G10O15496 165 aa15.11■□□□□ 0.01
VPS53-216ENST00000574029 NDUFB6O95139 128 aa15.11■□□□□ 0.01
VPS53-216ENST00000574029 RD3LP0DJH9 198 aa15.11■□□□□ 0.01
VPS53-216ENST00000574029 HLA-DRB4P13762 266 aa15.11■□□□□ 0.01
VPS53-216ENST00000574029 NPY1RP25929 384 aa15.11■□□□□ 0.01
VPS53-216ENST00000574029 CCR6P51684 374 aa15.11■□□□□ 0.01
VPS53-216ENST00000574029 SRPXP78539 464 aa15.11■□□□□ 0.01
VPS53-216ENST00000574029 ZNF705AQ6ZN79 300 aaPredicted RBP15.11■□□□□ 0.01
VPS53-216ENST00000574029 TMED4Q7Z7H5 227 aa15.11■□□□□ 0.01
VPS53-216ENST00000574029 NEU1Q99519 415 aa15.11■□□□□ 0.01
VPS53-216ENST00000574029 NDUFAF3Q9BU61 184 aa15.11■□□□□ 0.01
VPS53-216ENST00000574029 HLA-DRB4X5D2U9 266 aa15.11■□□□□ 0.01
VPS53-216ENST00000574029 A0A0B4J2A0 478 aa15.1■□□□□ 0.01
VPS53-216ENST00000574029 BTCP35070 178 aa15.1■□□□□ 0.01
VPS53-216ENST00000574029 NKX2-1P43699 371 aaPredicted RBP15.1■□□□□ 0.01
VPS53-216ENST00000574029 UBE2MP61081 183 aaKnown RBP15.1■□□□□ 0.01
VPS53-216ENST00000574029 NMSQ5H8A3 153 aa15.1■□□□□ 0.01
VPS53-216ENST00000574029 NOXA1Q86UR1 476 aa15.1■□□□□ 0.01
VPS53-216ENST00000574029 LGI3Q8N145 548 aa15.1■□□□□ 0.01
VPS53-216ENST00000574029 ACY3Q96HD9 319 aa15.1■□□□□ 0.01
VPS53-216ENST00000574029 SHPKQ9UHJ6 478 aa15.1■□□□□ 0.01
VPS53-216ENST00000574029 FAT2Q9NYQ8 4349 aa15.09■□□□□ 0.01
VPS53-216ENST00000574029 LINC00854A0A1B0GVQ3 168 aa15.09■□□□□ 0.01
VPS53-216ENST00000574029 PSG1P11464 419 aa15.09■□□□□ 0.01
VPS53-216ENST00000574029 LRTM2Q8N967 370 aa15.09■□□□□ 0.01
VPS53-216ENST00000574029 CACFD1Q9UGQ2 172 aa15.09■□□□□ 0.01
VPS53-216ENST00000574029 ZNF705FA8MVS1 300 aaPredicted RBP15.08■□□□□ 0
VPS53-216ENST00000574029 SFT2D2O95562 160 aa15.08■□□□□ 0
VPS53-216ENST00000574029 ZNF705DP0CH99 300 aaPredicted RBP15.08■□□□□ 0
VPS53-216ENST00000574029 ZNF705BP0CI00 300 aaPredicted RBP15.08■□□□□ 0
VPS53-216ENST00000574029 OR51G1Q8NGK1 321 aa15.08■□□□□ 0
VPS53-216ENST00000574029 PRR13Q9NZ81 148 aa15.08■□□□□ 0
VPS53-216ENST00000574029 DUXBA0A1W2PPF3 345 aa15.07■□□□□ 0
VPS53-216ENST00000574029 SMIM9A6NGZ8 99 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms