RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 GSG1LQ6UXU4 331 aa12.08□□□□□ -0.48
CLN3-211ENST00000564091 OR51G1Q8NGK1 321 aa12.08□□□□□ -0.48
CLN3-211ENST00000564091 C15orf40Q8WUR7 153 aa12.08□□□□□ -0.48
CLN3-211ENST00000564091 MIXL1Q9H2W2 232 aa12.08□□□□□ -0.48
CLN3-211ENST00000564091 SEPSECSQ9HD40 501 aaKnown RBP12.08□□□□□ -0.48
CLN3-211ENST00000564091 CRYM-AS1A6NIL9 109 aa12.07□□□□□ -0.48
CLN3-211ENST00000564091 RTL8CO15255 209 aa12.07□□□□□ -0.48
CLN3-211ENST00000564091 HLA-DRB4P13762 266 aa12.07□□□□□ -0.48
CLN3-211ENST00000564091 GPR107Q5VW38 600 aa12.07□□□□□ -0.48
CLN3-211ENST00000564091 LINC00052Q96N35 136 aa12.07□□□□□ -0.48
CLN3-211ENST00000564091 PBDC1Q9BVG4 233 aa12.07□□□□□ -0.48
CLN3-211ENST00000564091 GPR132Q9UNW8 380 aa12.07□□□□□ -0.48
CLN3-211ENST00000564091 TMEM56-RWDD3S4R434 201 aa12.07□□□□□ -0.48
CLN3-211ENST00000564091 HLA-DRB4X5D2U9 266 aa12.07□□□□□ -0.48
CLN3-211ENST00000564091 IGHV3OR16-12A0A075B7B8 117 aa12.06□□□□□ -0.48
CLN3-211ENST00000564091 PRSS29PA6NIE9 313 aa12.06□□□□□ -0.48
CLN3-211ENST00000564091 DISC1C4P0D8 188 aa12.06□□□□□ -0.48
CLN3-211ENST00000564091 GSTZ1O43708 216 aaPredicted RBP12.06□□□□□ -0.48
CLN3-211ENST00000564091 IFNA10P01566 189 aa12.06□□□□□ -0.48
CLN3-211ENST00000564091 NKX2-1P43699 371 aaPredicted RBP12.06□□□□□ -0.48
CLN3-211ENST00000564091 SURF2Q15527 256 aaPredicted RBP12.06□□□□□ -0.48
CLN3-211ENST00000564091 NMSQ5H8A3 153 aa12.06□□□□□ -0.48
CLN3-211ENST00000564091 ZNF705AQ6ZN79 300 aaPredicted RBP12.06□□□□□ -0.48
CLN3-211ENST00000564091 WDR12Q9GZL7 423 aaKnown RBP12.06□□□□□ -0.48
CLN3-211ENST00000564091 CTDSP2O14595 271 aa12.05□□□□□ -0.48
CLN3-211ENST00000564091 RGS5O15539 181 aa12.05□□□□□ -0.48
CLN3-211ENST00000564091 SPART-AS1P0CW21 52 aa12.05□□□□□ -0.48
CLN3-211ENST00000564091 SULT1A3P0DMM9 295 aa12.05□□□□□ -0.48
CLN3-211ENST00000564091 SULT1A4P0DMN0 295 aa12.05□□□□□ -0.48
CLN3-211ENST00000564091 NOXA1Q86UR1 476 aa12.05□□□□□ -0.48
CLN3-211ENST00000564091 OR4C16Q8NGL9 310 aa12.05□□□□□ -0.48
CLN3-211ENST00000564091 RNF125Q96EQ8 232 aa12.05□□□□□ -0.48
CLN3-211ENST00000564091 PLA2G2EQ9NZK7 142 aa12.05□□□□□ -0.48
CLN3-211ENST00000564091 ZNF705FA8MVS1 300 aaPredicted RBP12.04□□□□□ -0.48
CLN3-211ENST00000564091 ZNF705DP0CH99 300 aaPredicted RBP12.04□□□□□ -0.48
CLN3-211ENST00000564091 ZNF705BP0CI00 300 aaPredicted RBP12.04□□□□□ -0.48
CLN3-211ENST00000564091 ZNF90Q03938 601 aa12.04□□□□□ -0.48
CLN3-211ENST00000564091 SSBP1Q04837 148 aaKnown RBP12.04□□□□□ -0.48
CLN3-211ENST00000564091 KLF9Q13886 244 aaPredicted RBP12.04□□□□□ -0.48
CLN3-211ENST00000564091 LGI3Q8N145 548 aa12.04□□□□□ -0.48
CLN3-211ENST00000564091 OR51S1Q8NGJ8 323 aa12.04□□□□□ -0.48
CLN3-211ENST00000564091 NEU1Q99519 415 aa12.04□□□□□ -0.48
CLN3-211ENST00000564091 U3KQ87 197 aa12.04□□□□□ -0.48
CLN3-211ENST00000564091 IGLV2-18A0A075B6J9 118 aa12.03□□□□□ -0.48
CLN3-211ENST00000564091 AKAIN1P0CW23 69 aa12.03□□□□□ -0.48
CLN3-211ENST00000564091 SMIM18P0DKX4 95 aa12.03□□□□□ -0.48
CLN3-211ENST00000564091 MRPS10P82664 201 aaKnown RBP12.03□□□□□ -0.48
CLN3-211ENST00000564091 OR4B1Q8NGF8 309 aa12.03□□□□□ -0.48
CLN3-211ENST00000564091 DTD1Q8TEA8 209 aa12.03□□□□□ -0.48
CLN3-211ENST00000564091 SMIM4Q8WVI0 70 aa12.03□□□□□ -0.48
CLN3-211ENST00000564091 RBKSQ9H477 322 aa12.03□□□□□ -0.48
CLN3-211ENST00000564091 SAV1Q9H4B6 383 aaPredicted RBP12.03□□□□□ -0.48
CLN3-211ENST00000564091 IGKV1D-37A0A075B6S9 117 aa12.02□□□□□ -0.49
CLN3-211ENST00000564091 SMIM9A6NGZ8 99 aa12.02□□□□□ -0.49
CLN3-211ENST00000564091 ZFP92A6NM28 416 aa12.02□□□□□ -0.49
CLN3-211ENST00000564091 MED14OSP0DP75 135 aa12.02□□□□□ -0.49
CLN3-211ENST00000564091 GAMTQ14353 236 aa12.02□□□□□ -0.49
CLN3-211ENST00000564091 FAM222AQ5U5X8 452 aa12.02□□□□□ -0.49
CLN3-211ENST00000564091 FOXI2Q6ZQN5 318 aa12.02□□□□□ -0.49
CLN3-211ENST00000564091 LYZL2Q7Z4W2 148 aa12.02□□□□□ -0.49
CLN3-211ENST00000564091 ZNF709Q8N972 641 aa12.02□□□□□ -0.49
CLN3-211ENST00000564091 IL22RA2Q969J5 263 aa12.02□□□□□ -0.49
CLN3-211ENST00000564091 PRRT1Q99946 306 aa12.02□□□□□ -0.49
CLN3-211ENST00000564091 SLC35B3Q9H1N7 401 aa12.02□□□□□ -0.49
CLN3-211ENST00000564091 DKK2Q9UBU2 259 aa12.02□□□□□ -0.49
CLN3-211ENST00000564091 HSPB7Q9UBY9 170 aa12.02□□□□□ -0.49
CLN3-211ENST00000564091 KCNIP3Q9Y2W7 256 aa12.02□□□□□ -0.49
CLN3-211ENST00000564091 RFNGQ9Y644 331 aa12.02□□□□□ -0.49
CLN3-211ENST00000564091 TMEM189A5PLL7 270 aa12.01□□□□□ -0.49
CLN3-211ENST00000564091 F6UB75 175 aa12.01□□□□□ -0.49
CLN3-211ENST00000564091 SOCS3O14543 225 aa12.01□□□□□ -0.49
CLN3-211ENST00000564091 IFNA21P01568 189 aa12.01□□□□□ -0.49
CLN3-211ENST00000564091 ID1P41134 155 aa12.01□□□□□ -0.49
CLN3-211ENST00000564091 CCR6P51684 374 aa12.01□□□□□ -0.49
CLN3-211ENST00000564091 LYZP61626 148 aa12.01□□□□□ -0.49
CLN3-211ENST00000564091 OR2F1Q13607 317 aa12.01□□□□□ -0.49
CLN3-211ENST00000564091 LGALS9BQ3B8N2 356 aa12.01□□□□□ -0.49
CLN3-211ENST00000564091 OR8G2PQ6IF36 304 aa12.01□□□□□ -0.49
CLN3-211ENST00000564091 CLVS1Q8IUQ0 354 aaPredicted RBP12.01□□□□□ -0.49
CLN3-211ENST00000564091 UBE2DNLQ8IWF7 75 aa12.01□□□□□ -0.49
CLN3-211ENST00000564091 COQ8AQ8NI60 647 aa12.01□□□□□ -0.49
CLN3-211ENST00000564091 CACFD1Q9UGQ2 172 aa12.01□□□□□ -0.49
CLN3-211ENST00000564091 PFDN2Q9UHV9 154 aa12.01□□□□□ -0.49
CLN3-211ENST00000564091 LRP1BQ9NZR2 4599 aa12□□□□□ -0.49
CLN3-211ENST00000564091 HTN3P15516 51 aa12□□□□□ -0.49
CLN3-211ENST00000564091 NUP62P37198 522 aaPredicted RBP12□□□□□ -0.49
CLN3-211ENST00000564091 IL18Q14116 193 aa12□□□□□ -0.49
CLN3-211ENST00000564091 SMCO1Q147U7 214 aa12□□□□□ -0.49
CLN3-211ENST00000564091 SPCS2Q15005 226 aa12□□□□□ -0.49
CLN3-211ENST00000564091 SLC35E1Q96K37 410 aa12□□□□□ -0.49
CLN3-211ENST00000564091 NIPSNAP3BQ9BS92 247 aa12□□□□□ -0.49
CLN3-211ENST00000564091 A0A0B4J2A0 478 aa11.99□□□□□ -0.49
CLN3-211ENST00000564091 AKR1C4P17516 323 aa11.99□□□□□ -0.49
CLN3-211ENST00000564091 GPX4P36969 197 aaPredicted RBP11.99□□□□□ -0.49
CLN3-211ENST00000564091 PSMB3P49720 205 aa11.99□□□□□ -0.49
CLN3-211ENST00000564091 SUPT4H1P63272 117 aaKnown RBP11.99□□□□□ -0.49
CLN3-211ENST00000564091 PSG9Q00887 426 aa11.99□□□□□ -0.49
CLN3-211ENST00000564091 FAM78BQ5VT40 261 aa11.99□□□□□ -0.49
CLN3-211ENST00000564091 C1orf158Q8N1D5 194 aa11.99□□□□□ -0.49
CLN3-211ENST00000564091 DIRAS2Q96HU8 199 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 128.9 ms