RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 VWC2LB2RUY7 222 aa10.81□□□□□ -0.68
CLK3-206ENST00000562078 GATA3P23771 443 aa10.81□□□□□ -0.68
CLK3-206ENST00000562078 AESQ08117 197 aa10.81□□□□□ -0.68
CLK3-206ENST00000562078 TRAT1Q6PIZ9 186 aa10.81□□□□□ -0.68
CLK3-206ENST00000562078 H2BFWTQ7Z2G1 175 aa10.81□□□□□ -0.68
CLK3-206ENST00000562078 C1orf159Q96HA4 380 aa10.81□□□□□ -0.68
CLK3-206ENST00000562078 IGF2BP2-AS1Q96M15 143 aa10.81□□□□□ -0.68
CLK3-206ENST00000562078 SPATA25Q9BR10 227 aa10.81□□□□□ -0.68
CLK3-206ENST00000562078 TRBV6-6A0A0A6YYG2 114 aa10.81□□□□□ -0.68
CLK3-206ENST00000562078 GGTLC3B5MD39 225 aa10.81□□□□□ -0.68
CLK3-206ENST00000562078 NPIPB11E5RHQ5 1161 aa10.81□□□□□ -0.68
CLK3-206ENST00000562078 MPDU1O75352 247 aa10.81□□□□□ -0.68
CLK3-206ENST00000562078 IGKV3-15P01624 115 aa10.81□□□□□ -0.68
CLK3-206ENST00000562078 C5orf64Q2M2E5 130 aa10.81□□□□□ -0.68
CLK3-206ENST00000562078 SHISA2Q6UWI4 295 aa10.81□□□□□ -0.68
CLK3-206ENST00000562078 KLF14Q8TD94 323 aaPredicted RBP10.81□□□□□ -0.68
CLK3-206ENST00000562078 PLPPR2Q96GM1 343 aa10.81□□□□□ -0.68
CLK3-206ENST00000562078 LINC00479Q96M42 142 aa10.81□□□□□ -0.68
CLK3-206ENST00000562078 KCNIP1Q9NZI2 227 aa10.81□□□□□ -0.68
CLK3-206ENST00000562078 ZNF257Q9Y2Q1 563 aa10.81□□□□□ -0.68
CLK3-206ENST00000562078 ZZEF1O43149 2961 aa10.81□□□□□ -0.68
CLK3-206ENST00000562078 CACNA1AO00555 2505 aa10.81□□□□□ -0.68
CLK3-206ENST00000562078 IQCF6A8MYZ5 107 aa10.8□□□□□ -0.68
CLK3-206ENST00000562078 CECR9P0C854 216 aa10.8□□□□□ -0.68
CLK3-206ENST00000562078 LTC4SQ16873 150 aa10.8□□□□□ -0.68
CLK3-206ENST00000562078 Q8NA96 180 aa10.8□□□□□ -0.68
CLK3-206ENST00000562078 C1orf162Q8NEQ5 155 aaPredicted RBP10.8□□□□□ -0.68
CLK3-206ENST00000562078 GRPP07492 148 aa10.8□□□□□ -0.68
CLK3-206ENST00000562078 FCGR2BP31994 310 aaPredicted RBP10.8□□□□□ -0.68
CLK3-206ENST00000562078 ATP5G2Q06055 141 aa10.8□□□□□ -0.68
CLK3-206ENST00000562078 SNRNP40Q96DI7 357 aaKnown RBP10.8□□□□□ -0.68
CLK3-206ENST00000562078 SS18L2Q9UHA2 77 aa10.8□□□□□ -0.68
CLK3-206ENST00000562078 FZR1Q9UM11 496 aa10.8□□□□□ -0.68
CLK3-206ENST00000562078 PROCRQ9UNN8 238 aa10.8□□□□□ -0.68
CLK3-206ENST00000562078 POLDIP2Q9Y2S7 368 aa10.8□□□□□ -0.68
CLK3-206ENST00000562078 ICE1Q9Y2F5 2266 aa10.79□□□□□ -0.68
CLK3-206ENST00000562078 HIGD1CA8MV81 97 aa10.79□□□□□ -0.68
CLK3-206ENST00000562078 NCR2O95944 276 aa10.79□□□□□ -0.68
CLK3-206ENST00000562078 TMEM177Q53S58 311 aa10.79□□□□□ -0.68
CLK3-206ENST00000562078 SAMD5Q5TGI4 173 aa10.79□□□□□ -0.68
CLK3-206ENST00000562078 LINC01545Q5VT33 79 aa10.79□□□□□ -0.68
CLK3-206ENST00000562078 Q6P435 159 aa10.79□□□□□ -0.68
CLK3-206ENST00000562078 SEM1Q6ZVN7 128 aa10.79□□□□□ -0.68
CLK3-206ENST00000562078 DUSP13Q9UII6 198 aa10.79□□□□□ -0.68
CLK3-206ENST00000562078 TM4SF20Q53R12 229 aa10.79□□□□□ -0.68
CLK3-206ENST00000562078 FA2HQ7L5A8 372 aa10.79□□□□□ -0.68
CLK3-206ENST00000562078 CHCHD1Q96BP2 118 aaKnown RBP10.79□□□□□ -0.68
CLK3-206ENST00000562078 OBP2BQ9NPH6 170 aa10.79□□□□□ -0.68
CLK3-206ENST00000562078 SPANXB1Q9NS25 103 aaPredicted RBP10.79□□□□□ -0.68
CLK3-206ENST00000562078 TRAPPC2LQ9UL33 140 aa10.79□□□□□ -0.68
CLK3-206ENST00000562078 PLCE1Q9P212 2302 aa10.79□□□□□ -0.68
CLK3-206ENST00000562078 OR2H2O95918 312 aa10.78□□□□□ -0.68
CLK3-206ENST00000562078 LIPFP07098 398 aa10.78□□□□□ -0.68
CLK3-206ENST00000562078 ERVK11-1P61568 191 aa10.78□□□□□ -0.68
CLK3-206ENST00000562078 WFDC2Q14508 124 aa10.78□□□□□ -0.68
CLK3-206ENST00000562078 FOXI2Q6ZQN5 318 aa10.78□□□□□ -0.68
CLK3-206ENST00000562078 Q8IYB0 196 aa10.78□□□□□ -0.68
CLK3-206ENST00000562078 C18orf15Q96N68 181 aa10.78□□□□□ -0.68
CLK3-206ENST00000562078 SPAG8Q99932 426 aaPredicted RBP10.78□□□□□ -0.68
CLK3-206ENST00000562078 IDI2-AS1Q9NZ38 188 aa10.78□□□□□ -0.68
CLK3-206ENST00000562078 TLN1Q9Y490 2541 aaKnown RBP10.78□□□□□ -0.68
CLK3-206ENST00000562078 HOXA4Q00056 320 aaPredicted RBP10.78□□□□□ -0.68
CLK3-206ENST00000562078 SH2D6Q7Z4S9 175 aa10.78□□□□□ -0.68
CLK3-206ENST00000562078 RPRMLQ8N4K4 120 aa10.78□□□□□ -0.68
CLK3-206ENST00000562078 MBD3L4A6NDZ8 208 aaPredicted RBP10.77□□□□□ -0.69
CLK3-206ENST00000562078 MBD3L3A6NE82 208 aaPredicted RBP10.77□□□□□ -0.69
CLK3-206ENST00000562078 MBD3L5A6NJ08 208 aaPredicted RBP10.77□□□□□ -0.69
CLK3-206ENST00000562078 CEBPDP49716 269 aaPredicted RBP10.77□□□□□ -0.69
CLK3-206ENST00000562078 PRAMEF5Q5TYX0 476 aa10.77□□□□□ -0.69
CLK3-206ENST00000562078 PRAMEF6Q5VXH4 476 aa10.77□□□□□ -0.69
CLK3-206ENST00000562078 MBD3L2Q8NHZ7 208 aaPredicted RBP10.77□□□□□ -0.69
CLK3-206ENST00000562078 ZNF503Q96F45 646 aa10.77□□□□□ -0.69
CLK3-206ENST00000562078 PCNX1Q96RV3 2341 aa10.77□□□□□ -0.69
CLK3-206ENST00000562078 PGPEP1Q9NXJ5 209 aa10.77□□□□□ -0.69
CLK3-206ENST00000562078 IGHV1-18A0A0C4DH31 117 aa10.77□□□□□ -0.69
CLK3-206ENST00000562078 PRSS46E5RG02 174 aa10.77□□□□□ -0.69
CLK3-206ENST00000562078 TIMM8AO60220 97 aaPredicted RBP10.77□□□□□ -0.69
CLK3-206ENST00000562078 TSPAN13O95857 204 aa10.77□□□□□ -0.69
CLK3-206ENST00000562078 OR9G9P0C7N8 305 aa10.77□□□□□ -0.69
CLK3-206ENST00000562078 PRR30Q53SZ7 412 aaPredicted RBP10.77□□□□□ -0.69
CLK3-206ENST00000562078 FAM162BQ5T6X4 162 aa10.77□□□□□ -0.69
CLK3-206ENST00000562078 GFRALQ6UXV0 394 aa10.77□□□□□ -0.69
CLK3-206ENST00000562078 ZNF826PQ6ZT77 177 aa10.77□□□□□ -0.69
CLK3-206ENST00000562078 ABHD12Q8N2K0 398 aa10.77□□□□□ -0.69
CLK3-206ENST00000562078 ZNF645Q8N7E2 425 aa10.77□□□□□ -0.69
CLK3-206ENST00000562078 FAM57AQ8TBR7 257 aa10.77□□□□□ -0.69
CLK3-206ENST00000562078 GRAMD2BQ96HH9 432 aa10.77□□□□□ -0.69
CLK3-206ENST00000562078 LSM4Q9Y4Z0 139 aaKnown RBP10.77□□□□□ -0.69
CLK3-206ENST00000562078 A0A1B0GXF2 115 aa10.76□□□□□ -0.69
CLK3-206ENST00000562078 IGLV1-44P01699 117 aa10.76□□□□□ -0.69
CLK3-206ENST00000562078 RTL8BQ17RB0 113 aa10.76□□□□□ -0.69
CLK3-206ENST00000562078 FAM215AQ9Y5M1 114 aa10.76□□□□□ -0.69
CLK3-206ENST00000562078 PRRG2O14669 202 aa10.76□□□□□ -0.69
CLK3-206ENST00000562078 WNT9BO14905 357 aa10.76□□□□□ -0.69
CLK3-206ENST00000562078 CRYGCP07315 174 aa10.76□□□□□ -0.69
CLK3-206ENST00000562078 INSL3P51460 131 aa10.76□□□□□ -0.69
CLK3-206ENST00000562078 HEYLQ9NQ87 328 aaPredicted RBP10.76□□□□□ -0.69
CLK3-206ENST00000562078 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.75□□□□□ -0.69
CLK3-206ENST00000562078 A1L4Q6 167 aa10.75□□□□□ -0.69
CLK3-206ENST00000562078 IGHV3-7P01780 117 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms