RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	PPTC7	Q8NI37	304 aa		2.92	□□□□□ -1.94
USP44-208	ENST00000552440	PP6455	Q8WZ26	134 aa		2.92	□□□□□ -1.94
USP44-208	ENST00000552440	SHANK2-AS3	Q9BTD1	123 aa		2.92	□□□□□ -1.94
USP44-208	ENST00000552440	TMEM133	Q9H2Q1	129 aa		2.92	□□□□□ -1.94
USP44-208	ENST00000552440	TCEAL2	Q9H3H9	227 aa	Predicted RBP	2.92	□□□□□ -1.94
USP44-208	ENST00000552440	BOK	Q9UMX3	212 aa	Predicted RBP	2.92	□□□□□ -1.94
USP44-208	ENST00000552440	SOX21	Q9Y651	276 aa	Predicted RBP	2.92	□□□□□ -1.94
USP44-208	ENST00000552440	TRIP11	Q15643	1979 aa		2.92	□□□□□ -1.94
USP44-208	ENST00000552440	NUP210	Q8TEM1	1887 aa	Predicted RBP	2.92	□□□□□ -1.94
USP44-208	ENST00000552440	COL18A1	P39060	1754 aa		2.92	□□□□□ -1.94
USP44-208	ENST00000552440	IGLV11-55	A0A075B6I3	123 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	IGHV3-43	A0A0B4J1X8	118 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	ODAM	A1E959	279 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	ZNF670-ZNF695	F2Z2N8	137 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	BPY2	O14599	106 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	ZNF324	O75467	553 aa	Predicted RBP	2.91	□□□□□ -1.94
USP44-208	ENST00000552440	CST7	O76096	145 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	IGLV3-25	P01717	112 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	ZNF688	P0C7X2	276 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	LGALS3	P17931	250 aa	Known RBP	2.91	□□□□□ -1.94
USP44-208	ENST00000552440	ATP6V0C	P27449	155 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	EIF2B2	P49770	351 aa	Known RBP	2.91	□□□□□ -1.94
USP44-208	ENST00000552440	LYZ	P61626	148 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	LUZP6	Q538Z0	58 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	FAM78A	Q5JUQ0	283 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	AADACL3	Q5VUY0	350 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	C3orf22	Q8N5N4	141 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	DAND5	Q8N907	189 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	SUMF2	Q8NBJ7	301 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	NAA38	Q9BRA0	125 aa	Known RBP	2.91	□□□□□ -1.94
USP44-208	ENST00000552440	CHCHD7	Q9BUK0	85 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	C1QTNF6	Q9BXI9	259 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	RPP21	Q9H633	154 aa	Known RBP	2.91	□□□□□ -1.94
USP44-208	ENST00000552440	IL36B	Q9NZH7	164 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	CELA1	Q9UNI1	258 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	KLK5	Q9Y337	293 aa	Predicted RBP	2.91	□□□□□ -1.94
USP44-208	ENST00000552440	RGPD8	O14715	1765 aa	Predicted RBP	2.91	□□□□□ -1.94
USP44-208	ENST00000552440	ANKRD36B	Q8N2N9	1353 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	NSD3	Q9BZ95	1437 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	IGHV1-58	A0A0C4DH39	117 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	SPAAR	A0A1B0GVQ0	90 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440		A0A1B0GVX0	72 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	C1orf196	B1AJZ1	125 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	BUB1B-PAK6	H3BSN5	160 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	INS	P01308	110 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	APCS	P02743	223 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	AKAIN1	P0CW23	69 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	FABP2	P12104	132 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	PSMB8	P28062	276 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	GUCA1A	P43080	201 aa	Predicted RBP	2.91	□□□□□ -1.94
USP44-208	ENST00000552440	KRTAP10-5	P60370	271 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	RPL30	P62888	115 aa	Known RBP	2.91	□□□□□ -1.94
USP44-208	ENST00000552440	CDK6	Q00534	326 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	LINC00305	Q7Z4B0	112 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	IFT20	Q8IY31	132 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	LINC01006	Q8NI28	216 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	STAG3L4	Q8TBR4	150 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	C1orf147	Q96MC9	270 aa	Predicted RBP	2.91	□□□□□ -1.94
USP44-208	ENST00000552440	TBL1Y	Q9BQ87	522 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	DERL1	Q9BUN8	251 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	DEFB126	Q9BYW3	111 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	FUT9	Q9Y231	359 aa		2.91	□□□□□ -1.94
USP44-208	ENST00000552440	MEGF6	O75095	1541 aa		2.9	□□□□□ -1.94
USP44-208	ENST00000552440	CARMIL3	Q8ND23	1372 aa		2.9	□□□□□ -1.94
USP44-208	ENST00000552440		A0A0D9SEW6	157 aa		2.9	□□□□□ -1.95
USP44-208	ENST00000552440	NAPSA	O96009	420 aa		2.9	□□□□□ -1.95
USP44-208	ENST00000552440		P0C879	139 aa		2.9	□□□□□ -1.95
USP44-208	ENST00000552440	S100A4	P26447	101 aa	Known RBP	2.9	□□□□□ -1.95
USP44-208	ENST00000552440	RPL22	P35268	128 aa	Known RBP	2.9	□□□□□ -1.95
USP44-208	ENST00000552440	CSN1S1	P47710	185 aa		2.9	□□□□□ -1.95
USP44-208	ENST00000552440	LGALS9B	Q3B8N2	356 aa		2.9	□□□□□ -1.95
USP44-208	ENST00000552440	ZNF678	Q5SXM1	525 aa		2.9	□□□□□ -1.95
USP44-208	ENST00000552440	LGALS9C	Q6DKI2	356 aa		2.9	□□□□□ -1.95
USP44-208	ENST00000552440	SMIM5	Q71RC9	77 aa		2.9	□□□□□ -1.95
USP44-208	ENST00000552440	C14orf178	Q8N769	122 aa	Predicted RBP	2.9	□□□□□ -1.95
USP44-208	ENST00000552440	OR10G2	Q8NGC3	310 aa		2.9	□□□□□ -1.95
USP44-208	ENST00000552440	BRK1	Q8WUW1	75 aa		2.9	□□□□□ -1.95
USP44-208	ENST00000552440	MAGOHB	Q96A72	148 aa	Known RBP	2.9	□□□□□ -1.95
USP44-208	ENST00000552440	OR4C12	Q96R67	309 aa		2.9	□□□□□ -1.95
USP44-208	ENST00000552440	PLA2G12A	Q9BZM1	189 aa		2.9	□□□□□ -1.95
USP44-208	ENST00000552440	ADAMTS7	Q9UKP4	1686 aa		2.9	□□□□□ -1.95
USP44-208	ENST00000552440	ABCC6	O95255	1503 aa		2.9	□□□□□ -1.95
USP44-208	ENST00000552440	AKAP12	Q02952	1782 aa		2.9	□□□□□ -1.95
USP44-208	ENST00000552440	BTAF1	O14981	1849 aa		2.89	□□□□□ -1.95
USP44-208	ENST00000552440	MKI67	P46013	3256 aa	Known RBP	2.89	□□□□□ -1.95
USP44-208	ENST00000552440		A0A087WYN8	130 aa		2.89	□□□□□ -1.95
USP44-208	ENST00000552440		A0A1W2PPR1	153 aa		2.89	□□□□□ -1.95
USP44-208	ENST00000552440	TMEM256-PLSCR3	K7ERE1	68 aa		2.89	□□□□□ -1.95
USP44-208	ENST00000552440	HIST1H1B	P16401	226 aa	Known RBP	2.89	□□□□□ -1.95
USP44-208	ENST00000552440	CRYBB3	P26998	211 aa		2.89	□□□□□ -1.95
USP44-208	ENST00000552440		Q1RN00	199 aa		2.89	□□□□□ -1.95
USP44-208	ENST00000552440	MRGPRG-AS1	Q2M3A8	158 aa		2.89	□□□□□ -1.95
USP44-208	ENST00000552440	KRTAP24-1	Q3LI83	254 aa		2.89	□□□□□ -1.95
USP44-208	ENST00000552440	AMTN	Q6UX39	209 aa		2.89	□□□□□ -1.95
USP44-208	ENST00000552440	TRAPPC6B	Q86SZ2	158 aa		2.89	□□□□□ -1.95
USP44-208	ENST00000552440	CEND1	Q8N111	149 aa		2.89	□□□□□ -1.95
USP44-208	ENST00000552440	C10orf126	Q8N4M7	172 aa		2.89	□□□□□ -1.95
USP44-208	ENST00000552440	ITLN2	Q8WWU7	325 aa	Predicted RBP	2.89	□□□□□ -1.95
USP44-208	ENST00000552440	TMEM158	Q8WZ71	300 aa		2.89	□□□□□ -1.95
USP44-208	ENST00000552440	SDF2	Q99470	211 aa		2.89	□□□□□ -1.95

Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms