RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 F2RL2O00254 374 aa4.3□□□□□ -1.72
USP28-213ENST00000544967 TSPAN13O95857 204 aa4.3□□□□□ -1.72
USP28-213ENST00000544967 CT45A10P0DMU9 189 aa4.3□□□□□ -1.72
USP28-213ENST00000544967 HLA-DRB4P13762 266 aa4.3□□□□□ -1.72
USP28-213ENST00000544967 USF1P22415 310 aaPredicted RBP4.3□□□□□ -1.72
USP28-213ENST00000544967 SSTR5P35346 364 aa4.3□□□□□ -1.72
USP28-213ENST00000544967 C2orf91Q6ZV80 131 aa4.3□□□□□ -1.72
USP28-213ENST00000544967 BPIFA4PQ86YQ2 179 aa4.3□□□□□ -1.72
USP28-213ENST00000544967 ZNF808Q8N4W9 903 aaPredicted RBP4.3□□□□□ -1.72
USP28-213ENST00000544967 BLNKQ8WV28 456 aa4.3□□□□□ -1.72
USP28-213ENST00000544967 SPAG8Q99932 426 aaPredicted RBP4.3□□□□□ -1.72
USP28-213ENST00000544967 GFRA4Q9GZZ7 299 aa4.3□□□□□ -1.72
USP28-213ENST00000544967 NPVFQ9HCQ7 196 aa4.3□□□□□ -1.72
USP28-213ENST00000544967 HLA-DRB4X5D2U9 266 aa4.3□□□□□ -1.72
USP28-213ENST00000544967 CHD6Q8TD26 2715 aa4.3□□□□□ -1.72
USP28-213ENST00000544967 UNC79Q9P2D8 2635 aa4.3□□□□□ -1.72
USP28-213ENST00000544967 TRAV38-1A0A0B4J264 116 aa4.3□□□□□ -1.72
USP28-213ENST00000544967 C15orf62A8K5M9 175 aa4.3□□□□□ -1.72
USP28-213ENST00000544967 CRYAAP02489 173 aa4.3□□□□□ -1.72
USP28-213ENST00000544967 HTR1DP28221 377 aa4.3□□□□□ -1.72
USP28-213ENST00000544967 RIPPLY3P57055 190 aa4.3□□□□□ -1.72
USP28-213ENST00000544967 PRR30Q53SZ7 412 aaPredicted RBP4.3□□□□□ -1.72
USP28-213ENST00000544967 Q56UQ5 140 aa4.3□□□□□ -1.72
USP28-213ENST00000544967 HIST2H2BCQ6DN03 193 aa4.3□□□□□ -1.72
USP28-213ENST00000544967 HIST2H2BDQ6DRA6 164 aa4.3□□□□□ -1.72
USP28-213ENST00000544967 PQLC2Q6ZP29 291 aa4.3□□□□□ -1.72
USP28-213ENST00000544967 PRR22Q8IZ63 422 aa4.3□□□□□ -1.72
USP28-213ENST00000544967 COQ2Q96H96 371 aa4.3□□□□□ -1.72
USP28-213ENST00000544967 NDFIP1Q9BT67 221 aa4.3□□□□□ -1.72
USP28-213ENST00000544967 GGTLC1Q9BX51 225 aa4.3□□□□□ -1.72
USP28-213ENST00000544967 YTHDF2Q9Y5A9 579 aaKnown RBP4.3□□□□□ -1.72
USP28-213ENST00000544967 FASNP49327 2511 aaKnown RBP4.29□□□□□ -1.72
USP28-213ENST00000544967 COL6A6A6NMZ7 2263 aa4.29□□□□□ -1.72
USP28-213ENST00000544967 KNTC1P50748 2209 aa4.29□□□□□ -1.72
USP28-213ENST00000544967 EPG5Q9HCE0 2579 aa4.29□□□□□ -1.72
USP28-213ENST00000544967 A0A1W2PPM0 123 aa4.29□□□□□ -1.72
USP28-213ENST00000544967 SHISA9B4DS77 424 aa4.29□□□□□ -1.72
USP28-213ENST00000544967 F8W1H4 67 aa4.29□□□□□ -1.72
USP28-213ENST00000544967 SLC17A3O00476 420 aa4.29□□□□□ -1.72
USP28-213ENST00000544967 IGLV2-8P01709 118 aa4.29□□□□□ -1.72
USP28-213ENST00000544967 MAGEA5P43359 124 aa4.29□□□□□ -1.72
USP28-213ENST00000544967 PLP1P60201 277 aa4.29□□□□□ -1.72
USP28-213ENST00000544967 CEACAM21Q3KPI0 293 aa4.29□□□□□ -1.72
USP28-213ENST00000544967 CENPWQ5EE01 88 aa4.29□□□□□ -1.72
USP28-213ENST00000544967 OR10AG1Q8NH19 301 aa4.29□□□□□ -1.72
USP28-213ENST00000544967 ATP6V0E2Q8NHE4 81 aa4.29□□□□□ -1.72
USP28-213ENST00000544967 HIGD1BQ9P298 99 aa4.29□□□□□ -1.72
USP28-213ENST00000544967 FOXA2Q9Y261 457 aaPredicted RBP4.29□□□□□ -1.72
USP28-213ENST00000544967 TRGV5A0A0B4J1U4 118 aa4.29□□□□□ -1.72
USP28-213ENST00000544967 HIST1H1EP10412 219 aaKnown RBP4.29□□□□□ -1.72
USP28-213ENST00000544967 AZU1P20160 251 aa4.29□□□□□ -1.72
USP28-213ENST00000544967 IBA57Q5T440 356 aaKnown RBP4.29□□□□□ -1.72
USP28-213ENST00000544967 DOLPP1Q86YN1 238 aa4.29□□□□□ -1.72
USP28-213ENST00000544967 Q8IYB0 196 aa4.29□□□□□ -1.72
USP28-213ENST00000544967 OR4A5Q8NH83 315 aa4.29□□□□□ -1.72
USP28-213ENST00000544967 JMJD8Q96S16 334 aa4.29□□□□□ -1.72
USP28-213ENST00000544967 MRPL32Q9BYC8 188 aaKnown RBP4.29□□□□□ -1.72
USP28-213ENST00000544967 TECRQ9NZ01 308 aaKnown RBP4.29□□□□□ -1.72
USP28-213ENST00000544967 AHCTF1Q8WYP5 2266 aa4.29□□□□□ -1.72
USP28-213ENST00000544967 BOD1L1Q8NFC6 3051 aa4.29□□□□□ -1.72
USP28-213ENST00000544967 A0A087WWL8 130 aa4.29□□□□□ -1.72
USP28-213ENST00000544967 FAM90A27PA6NNH2 459 aa4.29□□□□□ -1.72
USP28-213ENST00000544967 NPIPA3F8WFD2 350 aa4.29□□□□□ -1.72
USP28-213ENST00000544967 LEPROTL1O95214 131 aa4.29□□□□□ -1.72
USP28-213ENST00000544967 FHL3Q13643 280 aa4.29□□□□□ -1.72
USP28-213ENST00000544967 TIMM23BQ5SRD1 257 aa4.29□□□□□ -1.72
USP28-213ENST00000544967 LCN12Q6JVE5 192 aa4.29□□□□□ -1.72
USP28-213ENST00000544967 PTH2Q96A98 100 aa4.29□□□□□ -1.72
USP28-213ENST00000544967 LINC00470Q9BZP3 86 aa4.29□□□□□ -1.72
USP28-213ENST00000544967 ZNF257Q9Y2Q1 563 aa4.29□□□□□ -1.72
USP28-213ENST00000544967 A0A0G2JLM5 398 aa4.28□□□□□ -1.72
USP28-213ENST00000544967 FGF6P10767 208 aa4.28□□□□□ -1.72
USP28-213ENST00000544967 NTF3P20783 257 aa4.28□□□□□ -1.72
USP28-213ENST00000544967 PRR20EP86478 221 aa4.28□□□□□ -1.72
USP28-213ENST00000544967 PRR20CP86479 221 aa4.28□□□□□ -1.72
USP28-213ENST00000544967 PRR20DP86480 221 aa4.28□□□□□ -1.72
USP28-213ENST00000544967 PRR20BP86481 221 aa4.28□□□□□ -1.72
USP28-213ENST00000544967 PRR20AP86496 221 aa4.28□□□□□ -1.72
USP28-213ENST00000544967 GCSAMLQ5JQS6 135 aa4.28□□□□□ -1.72
USP28-213ENST00000544967 TREML4Q6UXN2 200 aa4.28□□□□□ -1.72
USP28-213ENST00000544967 SSX8Q7RTT4 187 aa4.28□□□□□ -1.72
USP28-213ENST00000544967 DRAM1Q8N682 238 aa4.28□□□□□ -1.72
USP28-213ENST00000544967 GCSAMQ8N6F7 178 aa4.28□□□□□ -1.72
USP28-213ENST00000544967 OR9G1Q8NH87 305 aa4.28□□□□□ -1.72
USP28-213ENST00000544967 ZNF71Q9NQZ8 489 aaPredicted RBP4.28□□□□□ -1.72
USP28-213ENST00000544967 ZNF492Q9P255 531 aa4.28□□□□□ -1.72
USP28-213ENST00000544967 URB1O60287 2271 aaKnown RBP4.28□□□□□ -1.72
USP28-213ENST00000544967 GAGE12HA6NDE8 117 aa4.28□□□□□ -1.72
USP28-213ENST00000544967 FABP2P12104 132 aa4.28□□□□□ -1.72
USP28-213ENST00000544967 BCL3P20749 454 aa4.28□□□□□ -1.72
USP28-213ENST00000544967 TAS2R45P59539 299 aa4.28□□□□□ -1.72
USP28-213ENST00000544967 PLGLB1Q02325 96 aa4.28□□□□□ -1.72
USP28-213ENST00000544967 ZNF497Q6ZNH5 498 aa4.28□□□□□ -1.72
USP28-213ENST00000544967 FAM19A2Q8N3H0 131 aa4.28□□□□□ -1.72
USP28-213ENST00000544967 ZNF502Q8TBZ5 544 aa4.28□□□□□ -1.72
USP28-213ENST00000544967 ITLN2Q8WWU7 325 aaPredicted RBP4.28□□□□□ -1.72
USP28-213ENST00000544967 URB1-AS1Q96HZ7 61 aa4.28□□□□□ -1.72
USP28-213ENST00000544967 HSD17B10Q99714 261 aaKnown RBP4.28□□□□□ -1.72
USP28-213ENST00000544967 MGST2Q99735 147 aa4.28□□□□□ -1.72
USP28-213ENST00000544967 KLRF1Q9NZS2 232 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 105.4 ms