RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 FGF20Q9NP95 211 aaPredicted RBP2.33□□□□□ -2.04
USP28-210ENST00000542033 CLCF1Q9UBD9 225 aa2.33□□□□□ -2.04
USP28-210ENST00000542033 LSM7Q9UK45 103 aaKnown RBP2.33□□□□□ -2.04
USP28-210ENST00000542033 ZNF256Q9Y2P7 627 aaPredicted RBP2.33□□□□□ -2.04
USP28-210ENST00000542033 MPC1Q9Y5U8 109 aa2.33□□□□□ -2.04
USP28-210ENST00000542033 TNS2Q63HR2 1409 aa2.33□□□□□ -2.04
USP28-210ENST00000542033 TRPM7Q96QT4 1865 aa2.33□□□□□ -2.04
USP28-210ENST00000542033 HELZP42694 1942 aaKnown RBP2.32□□□□□ -2.04
USP28-210ENST00000542033 ADAMTS9Q9P2N4 1935 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 HCFC1P51610 2035 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 COL14A1Q05707 1796 aaKnown RBP2.32□□□□□ -2.04
USP28-210ENST00000542033 TRAV1-2A0A0B4J238 106 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 A0A1W2PPM0 123 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 FAM231BA6NCW3 169 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 RBFOX3A6NFN3 312 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 DPRXA6NFQ7 191 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 GGTLC3B5MD39 225 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 PITX3O75364 302 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 CA2P00918 260 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 IGHV3-48P01763 117 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 HBE1P02100 147 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 EIF4EP06730 217 aaKnown RBP2.32□□□□□ -2.04
USP28-210ENST00000542033 SRP19P09132 144 aaKnown RBP2.32□□□□□ -2.04
USP28-210ENST00000542033 SLC25A6P12236 298 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 GRPRP30550 384 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 RBMXP38159 391 aaKnown RBP2.32□□□□□ -2.04
USP28-210ENST00000542033 NBL1P41271 181 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 PPICP45877 212 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 FABP6P51161 128 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 DLX1P56177 255 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 RPS24P62847 133 aaKnown RBP2.32□□□□□ -2.04
USP28-210ENST00000542033 NDPQ00604 133 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 MEF2CQ06413 473 aaPredicted RBP2.32□□□□□ -2.04
USP28-210ENST00000542033 LAMTOR4Q0VGL1 99 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 GGTLC2Q14390 218 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 IHHQ14623 411 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 MSMO1Q15800 293 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 C4orf26Q17RF5 130 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 MPV17LQ2QL34 196 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 LINC00303Q3SY05 128 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 PSMG4Q5JS54 123 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 LCN15Q6UWW0 184 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 SHISA6Q6ZSJ9 500 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 PRSS41Q7RTY9 318 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 FAM19A1Q7Z5A9 133 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 C1orf158Q8N1D5 194 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 C10orf111Q8N326 155 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 TMEM252Q8N6L7 170 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 ZNF615Q8N8J6 731 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 Q8N976 141 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 ZFP62Q8NB50 900 aaPredicted RBP2.32□□□□□ -2.04
USP28-210ENST00000542033 OR5H2Q8NGV7 314 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 OR4K13Q8NH42 304 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 OR51H1Q8NH63 302 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 OR10G6Q8NH81 332 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 SCGB1C1Q8TD33 95 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 C2orf15Q8WU43 125 aaKnown RBP2.32□□□□□ -2.04
USP28-210ENST00000542033 PPP1R1CQ8WVI7 109 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 RTN4IP1Q8WWV3 396 aaPredicted RBP2.32□□□□□ -2.04
USP28-210ENST00000542033 NEIL2Q969S2 332 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 RAB37Q96AX2 223 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 HSD17B10Q99714 261 aaKnown RBP2.32□□□□□ -2.04
USP28-210ENST00000542033 RARRES2Q99969 163 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 AGMATQ9BSE5 352 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 COMMD5Q9GZQ3 224 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 CHST6Q9GZX3 395 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 PBOV1Q9GZY1 135 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 LAMTOR3Q9UHA4 124 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 ZNF257Q9Y2Q1 563 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 SPCS1Q9Y6A9 102 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 PXMP4Q9Y6I8 212 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 XIRP1Q702N8 1843 aaKnown RBP2.32□□□□□ -2.04
USP28-210ENST00000542033 SBF2Q86WG5 1849 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 ANK1P16157 1881 aa2.32□□□□□ -2.04
USP28-210ENST00000542033 CHD3Q12873 2000 aaKnown RBP2.32□□□□□ -2.04
USP28-210ENST00000542033 RICTORQ6R327 1708 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 BTAF1O14981 1849 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 ALPK3Q96L96 1907 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 SHROOM3Q8TF72 1996 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 IGLV3-22A0A075B6J6 115 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 OR4C45A6NMZ5 311 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 CEACAM18A8MTB9 384 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 ZNF727A8MUV8 499 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 H3BMG7 143 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 CCDC179H3BU77 68 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 ISLRO14498 428 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 UQCRQO14949 82 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 MRPS12O15235 138 aaKnown RBP2.31□□□□□ -2.04
USP28-210ENST00000542033 ENSAO43768 121 aaKnown RBP2.31□□□□□ -2.04
USP28-210ENST00000542033 MPDU1O75352 247 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 NDUFC2O95298 119 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 NAPSAO96009 420 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 IGHV3-23P01764 117 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 LGALS1P09382 135 aaKnown RBP2.31□□□□□ -2.04
USP28-210ENST00000542033 IGLC6P0CF74 106 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 LINC00694P0DN24 101 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 CCR2P41597 374 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 EGFEM1PQ0D2K5 195 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 GUSBP1Q15486 140 aa2.31□□□□□ -2.04
USP28-210ENST00000542033 CEACAM16Q2WEN9 425 aa2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms