RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 IGLV2-8P01709 118 aa13.5□□□□□ -0.25
USP28-208ENST00000540438 TAS2R45P59539 299 aa13.5□□□□□ -0.25
USP28-208ENST00000540438 TMEM167BQ9NRX6 74 aa13.5□□□□□ -0.25
USP28-208ENST00000540438 NCBP2LA6PVI3 153 aaKnown RBP13.5□□□□□ -0.25
USP28-208ENST00000540438 PPP1R27Q86WC6 154 aa13.5□□□□□ -0.25
USP28-208ENST00000540438 CLEC7AQ9BXN2 247 aa13.5□□□□□ -0.25
USP28-208ENST00000540438 TIMM8BQ9Y5J9 83 aaPredicted RBP13.5□□□□□ -0.25
USP28-208ENST00000540438 TCRBV4S1A1TA0A5B7 111 aa13.5□□□□□ -0.25
USP28-208ENST00000540438 CRISP2P16562 243 aa13.5□□□□□ -0.25
USP28-208ENST00000540438 PMCHP20382 165 aa13.5□□□□□ -0.25
USP28-208ENST00000540438 RCHY1Q96PM5 261 aa13.5□□□□□ -0.25
USP28-208ENST00000540438 IGHV3OR16-10A0A075B7F0 116 aa13.49□□□□□ -0.25
USP28-208ENST00000540438 PSMB11A5LHX3 300 aa13.49□□□□□ -0.25
USP28-208ENST00000540438 USF2Q15853 346 aaPredicted RBP13.49□□□□□ -0.25
USP28-208ENST00000540438 VSTM2AQ8TAG5 236 aa13.49□□□□□ -0.25
USP28-208ENST00000540438 SRSF12Q8WXF0 261 aaKnown RBP13.49□□□□□ -0.25
USP28-208ENST00000540438 C14orf144Q96I85 54 aa13.49□□□□□ -0.25
USP28-208ENST00000540438 MS4A10Q96PG2 267 aa13.49□□□□□ -0.25
USP28-208ENST00000540438 LINC00310P59036 64 aa13.49□□□□□ -0.25
USP28-208ENST00000540438 FOXL1Q12952 345 aa13.49□□□□□ -0.25
USP28-208ENST00000540438 TCF24Q7RTU0 167 aa13.49□□□□□ -0.25
USP28-208ENST00000540438 SETD2Q9BYW2 2564 aaPredicted RBP13.49□□□□□ -0.25
USP28-208ENST00000540438 A0A1B0GV90 55 aa13.48□□□□□ -0.25
USP28-208ENST00000540438 NTF3P20783 257 aa13.48□□□□□ -0.25
USP28-208ENST00000540438 LINC00322Q6ZN03 302 aaPredicted RBP13.48□□□□□ -0.25
USP28-208ENST00000540438 WNT10AQ9GZT5 417 aa13.48□□□□□ -0.25
USP28-208ENST00000540438 M0QZ24 198 aa13.48□□□□□ -0.25
USP28-208ENST00000540438 IGLV1-47P01700 117 aa13.48□□□□□ -0.25
USP28-208ENST00000540438 PSG1P11464 419 aa13.48□□□□□ -0.25
USP28-208ENST00000540438 DDTP30046 118 aa13.48□□□□□ -0.25
USP28-208ENST00000540438 UQCRFS1P47985 274 aa13.48□□□□□ -0.25
USP28-208ENST00000540438 SUB1P53999 127 aaKnown RBP eCLIP13.48□□□□□ -0.25
USP28-208ENST00000540438 LCN2P80188 198 aa13.48□□□□□ -0.25
USP28-208ENST00000540438 GBGT1Q8N5D6 347 aa13.48□□□□□ -0.25
USP28-208ENST00000540438 TMEM18Q96B42 140 aa13.48□□□□□ -0.25
USP28-208ENST00000540438 HSPB9Q9BQS6 159 aa13.48□□□□□ -0.25
USP28-208ENST00000540438 SAMD10Q9BYL1 202 aa13.48□□□□□ -0.25
USP28-208ENST00000540438 JOSD1Q15040 202 aaPredicted RBP13.48□□□□□ -0.25
USP28-208ENST00000540438 IGFL4Q6B9Z1 124 aa13.48□□□□□ -0.25
USP28-208ENST00000540438 DYNAPQ8N1N2 210 aa13.48□□□□□ -0.25
USP28-208ENST00000540438 CMTM2Q8TAZ6 248 aa13.48□□□□□ -0.25
USP28-208ENST00000540438 FXYD5Q96DB9 178 aa13.48□□□□□ -0.25
USP28-208ENST00000540438 MUC21A0A0G2JKD1 596 aa13.47□□□□□ -0.25
USP28-208ENST00000540438 MUC21A0A140T8X8 626 aa13.47□□□□□ -0.25
USP28-208ENST00000540438 ZNF137PP52743 207 aa13.47□□□□□ -0.25
USP28-208ENST00000540438 PRRX1P54821 245 aa13.47□□□□□ -0.25
USP28-208ENST00000540438 MUC21Q5SSG8 566 aa13.47□□□□□ -0.25
USP28-208ENST00000540438 SELENOKQ9Y6D0 94 aa13.47□□□□□ -0.25
USP28-208ENST00000540438 SRIP30626 198 aa13.47□□□□□ -0.25
USP28-208ENST00000540438 CA7P43166 264 aa13.47□□□□□ -0.25
USP28-208ENST00000540438 ZNF329Q86UD4 541 aa13.47□□□□□ -0.25
USP28-208ENST00000540438 ATOH7Q8N100 152 aa13.47□□□□□ -0.25
USP28-208ENST00000540438 GNB4Q9HAV0 340 aa13.47□□□□□ -0.25
USP28-208ENST00000540438 CBLN4Q9NTU7 201 aa13.47□□□□□ -0.25
USP28-208ENST00000540438 TYMSP04818 313 aa13.46□□□□□ -0.25
USP28-208ENST00000540438 TOMM20LQ6UXN7 152 aa13.46□□□□□ -0.25
USP28-208ENST00000540438 VN1R17PQ8TDU5 208 aa13.46□□□□□ -0.25
USP28-208ENST00000540438 IGHV3OR16-13A0A075B7E8 117 aa13.46□□□□□ -0.26
USP28-208ENST00000540438 IGHV3-74A0A0B4J1X5 117 aa13.46□□□□□ -0.26
USP28-208ENST00000540438 RNF224P0DH78 156 aa13.46□□□□□ -0.26
USP28-208ENST00000540438 KRTDAPP60985 99 aa13.46□□□□□ -0.26
USP28-208ENST00000540438 BTF3L4Q96K17 158 aa13.46□□□□□ -0.26
USP28-208ENST00000540438 ATG101Q9BSB4 218 aa13.46□□□□□ -0.26
USP28-208ENST00000540438 PEX7O00628 323 aa13.45□□□□□ -0.26
USP28-208ENST00000540438 MC5RP33032 325 aa13.45□□□□□ -0.26
USP28-208ENST00000540438 OR8B3Q8NGG8 313 aa13.45□□□□□ -0.26
USP28-208ENST00000540438 C11orf52Q96A22 123 aa13.45□□□□□ -0.26
USP28-208ENST00000540438 OR8B2Q96RD0 313 aa13.45□□□□□ -0.26
USP28-208ENST00000540438 TPPP3Q9BW30 176 aa13.45□□□□□ -0.26
USP28-208ENST00000540438 EPG5Q9HCE0 2579 aa13.45□□□□□ -0.26
USP28-208ENST00000540438 TGOLN2O43493 480 aa13.45□□□□□ -0.26
USP28-208ENST00000540438 NBEAP1P0C6P0 100 aa13.45□□□□□ -0.26
USP28-208ENST00000540438 SLAQ13239 276 aa13.45□□□□□ -0.26
USP28-208ENST00000540438 Q6ZWC4 215 aa13.45□□□□□ -0.26
USP28-208ENST00000540438 CACNG8Q8WXS5 425 aa13.45□□□□□ -0.26
USP28-208ENST00000540438 UBTD1Q9HAC8 227 aa13.45□□□□□ -0.26
USP28-208ENST00000540438 KAAG1Q9UBP8 84 aa13.45□□□□□ -0.26
USP28-208ENST00000540438 PAM16Q9Y3D7 125 aa13.45□□□□□ -0.26
USP28-208ENST00000540438 TEX22C9J3V5 150 aa13.45□□□□□ -0.26
USP28-208ENST00000540438 TSTD3H0UI37 97 aa13.45□□□□□ -0.26
USP28-208ENST00000540438 COMPP49747 757 aaPredicted RBP13.45□□□□□ -0.26
USP28-208ENST00000540438 FOXA3P55318 350 aaPredicted RBP13.45□□□□□ -0.26
USP28-208ENST00000540438 UBE2G1P62253 170 aa13.45□□□□□ -0.26
USP28-208ENST00000540438 TMEM249Q2WGJ8 235 aa13.45□□□□□ -0.26
USP28-208ENST00000540438 NUDT10Q8NFP7 164 aa13.45□□□□□ -0.26
USP28-208ENST00000540438 NUDT11Q96G61 164 aa13.45□□□□□ -0.26
USP28-208ENST00000540438 TBX15Q96SF7 602 aa13.45□□□□□ -0.26
USP28-208ENST00000540438 CIARTQ8N365 385 aaPredicted RBP13.44□□□□□ -0.26
USP28-208ENST00000540438 OR2D3Q8NGH3 330 aa13.44□□□□□ -0.26
USP28-208ENST00000540438 CD99P14209 185 aa13.44□□□□□ -0.26
USP28-208ENST00000540438 ZFP36P26651 326 aaKnown RBP13.44□□□□□ -0.26
USP28-208ENST00000540438 BPIFB3P59826 476 aa13.44□□□□□ -0.26
USP28-208ENST00000540438 RPL19P84098 196 aaKnown RBP13.44□□□□□ -0.26
USP28-208ENST00000540438 PMCHL1Q16048 86 aa13.44□□□□□ -0.26
USP28-208ENST00000540438 IGF2BP2-AS1Q96M15 143 aa13.44□□□□□ -0.26
USP28-208ENST00000540438 VWC2LB2RUY7 222 aa13.43□□□□□ -0.26
USP28-208ENST00000540438 M0R3E3 92 aa13.43□□□□□ -0.26
USP28-208ENST00000540438 ZNF253O75346 499 aa13.43□□□□□ -0.26
USP28-208ENST00000540438 HYPMO75409 117 aa13.43□□□□□ -0.26
USP28-208ENST00000540438 GDF5OSQ5U4N7 250 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms