RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 CLEC3BP05452 202 aa5.72□□□□□ -1.49
CD44-228ENST00000528455 CTSGP08311 255 aa5.72□□□□□ -1.49
CD44-228ENST00000528455 TPPP2P59282 170 aa5.72□□□□□ -1.49
CD44-228ENST00000528455 OPCMLQ14982 345 aa5.72□□□□□ -1.49
CD44-228ENST00000528455 C15orf32Q32M92 178 aa5.72□□□□□ -1.49
CD44-228ENST00000528455 TMEM95Q3KNT9 176 aa5.72□□□□□ -1.49
CD44-228ENST00000528455 ACSM6Q6P461 480 aa5.72□□□□□ -1.49
CD44-228ENST00000528455 SPSB3Q6PJ21 355 aa5.72□□□□□ -1.49
CD44-228ENST00000528455 C19orf35Q6ZS72 473 aa5.72□□□□□ -1.49
CD44-228ENST00000528455 THAP8Q8NA92 274 aa5.72□□□□□ -1.49
CD44-228ENST00000528455 OR4X2Q8NGF9 303 aa5.72□□□□□ -1.49
CD44-228ENST00000528455 ZNF502Q8TBZ5 544 aa5.72□□□□□ -1.49
CD44-228ENST00000528455 SCGB1C1Q8TD33 95 aa5.72□□□□□ -1.49
CD44-228ENST00000528455 NPIPB3Q92617 1050 aa5.72□□□□□ -1.49
CD44-228ENST00000528455 RAB24Q969Q5 203 aa5.72□□□□□ -1.49
CD44-228ENST00000528455 BSCL2Q96G97 398 aaPredicted RBP5.72□□□□□ -1.49
CD44-228ENST00000528455 SLC35E1Q96K37 410 aa5.72□□□□□ -1.49
CD44-228ENST00000528455 ARV1Q9H2C2 271 aa5.72□□□□□ -1.49
CD44-228ENST00000528455 WFDC1Q9HC57 220 aa5.72□□□□□ -1.49
CD44-228ENST00000528455 CYTL1Q9NRR1 136 aa5.72□□□□□ -1.49
CD44-228ENST00000528455 C21orf62Q9NYP8 219 aa5.72□□□□□ -1.49
CD44-228ENST00000528455 WDR83OSQ9Y284 106 aa5.72□□□□□ -1.49
CD44-228ENST00000528455 LSM4Q9Y4Z0 139 aaKnown RBP5.72□□□□□ -1.49
CD44-228ENST00000528455 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP5.71□□□□□ -1.5
CD44-228ENST00000528455 KRTAP23-1A1A580 65 aa5.71□□□□□ -1.5
CD44-228ENST00000528455 BCL2L11O43521 198 aa5.71□□□□□ -1.5
CD44-228ENST00000528455 SCGB2A1O75556 95 aa5.71□□□□□ -1.5
CD44-228ENST00000528455 FABP1P07148 127 aa5.71□□□□□ -1.5
CD44-228ENST00000528455 YPEL3P61236 119 aaPredicted RBP5.71□□□□□ -1.5
CD44-228ENST00000528455 SELENOTP62341 195 aa5.71□□□□□ -1.5
CD44-228ENST00000528455 RUNX1Q01196 453 aa5.71□□□□□ -1.5
CD44-228ENST00000528455 CLINT1Q14677 625 aa5.71□□□□□ -1.5
CD44-228ENST00000528455 TCTEX1D4Q5JR98 221 aa5.71□□□□□ -1.5
CD44-228ENST00000528455 C10orf99Q6UWK7 81 aa5.71□□□□□ -1.5
CD44-228ENST00000528455 SLC16A13Q7RTY0 426 aa5.71□□□□□ -1.5
CD44-228ENST00000528455 SLC51BQ86UW2 128 aa5.71□□□□□ -1.5
CD44-228ENST00000528455 TAF15Q92804 592 aaKnown RBP eCLIP5.71□□□□□ -1.5
CD44-228ENST00000528455 GNPNAT1Q96EK6 184 aaPredicted RBP5.71□□□□□ -1.5
CD44-228ENST00000528455 ACY3Q96HD9 319 aa5.71□□□□□ -1.5
CD44-228ENST00000528455 TRGV9Q99603 122 aa5.71□□□□□ -1.5
CD44-228ENST00000528455 SMIM3Q9BZL3 60 aa5.71□□□□□ -1.5
CD44-228ENST00000528455 WDR61Q9GZS3 305 aaKnown RBP5.71□□□□□ -1.5
CD44-228ENST00000528455 PEF1Q9UBV8 284 aaKnown RBP5.71□□□□□ -1.5
CD44-228ENST00000528455 FBXL17Q9UF56 701 aa5.71□□□□□ -1.5
CD44-228ENST00000528455 TSSC4Q9Y5U2 329 aaPredicted RBP5.71□□□□□ -1.5
CD44-228ENST00000528455 IGKV1OR2-108A0A075B7D4 117 aa5.7□□□□□ -1.5
CD44-228ENST00000528455 TCRBV4S1A1TA0A5B7 111 aa5.7□□□□□ -1.5
CD44-228ENST00000528455 MFSD2BA6NFX1 497 aa5.7□□□□□ -1.5
CD44-228ENST00000528455 ZFP92A6NM28 416 aa5.7□□□□□ -1.5
CD44-228ENST00000528455 C17orf112F2Z3M2 114 aa5.7□□□□□ -1.5
CD44-228ENST00000528455 BOLA2-SMG1P6H3BVE0 249 aa5.7□□□□□ -1.5
CD44-228ENST00000528455 I3L521 148 aa5.7□□□□□ -1.5
CD44-228ENST00000528455 AGPAT2O15120 278 aa5.7□□□□□ -1.5
CD44-228ENST00000528455 NUPL2O15504 423 aaKnown RBP5.7□□□□□ -1.5
CD44-228ENST00000528455 GNG7O60262 68 aa5.7□□□□□ -1.5
CD44-228ENST00000528455 IGHV3-48P01763 117 aa5.7□□□□□ -1.5
CD44-228ENST00000528455 HSPB1P04792 205 aaKnown RBP5.7□□□□□ -1.5
CD44-228ENST00000528455 TPT1P13693 172 aaKnown RBP5.7□□□□□ -1.5
CD44-228ENST00000528455 RPL29P47914 159 aaKnown RBP5.7□□□□□ -1.5
CD44-228ENST00000528455 RND2P52198 227 aa5.7□□□□□ -1.5
CD44-228ENST00000528455 NKX2-5P52952 324 aaPredicted RBP5.7□□□□□ -1.5
CD44-228ENST00000528455 SERF2P84101 59 aa5.7□□□□□ -1.5
CD44-228ENST00000528455 AKR1C1Q04828 323 aa5.7□□□□□ -1.5
CD44-228ENST00000528455 RPL7L1Q6DKI1 246 aaKnown RBP5.7□□□□□ -1.5
CD44-228ENST00000528455 EIF5AL1Q6IS14 154 aaKnown RBP5.7□□□□□ -1.5
CD44-228ENST00000528455 BTNL8Q6UX41 500 aa5.7□□□□□ -1.5
CD44-228ENST00000528455 CLEC19AQ6UXS0 136 aa5.7□□□□□ -1.5
CD44-228ENST00000528455 BAP18Q8IXM2 172 aa5.7□□□□□ -1.5
CD44-228ENST00000528455 ZNF709Q8N972 641 aa5.7□□□□□ -1.5
CD44-228ENST00000528455 STOML3Q8TAV4 291 aa5.7□□□□□ -1.5
CD44-228ENST00000528455 Q8WTZ3 238 aa5.7□□□□□ -1.5
CD44-228ENST00000528455 GINS3Q9BRX5 216 aa5.7□□□□□ -1.5
CD44-228ENST00000528455 MRPL36Q9P0J6 103 aaKnown RBP5.7□□□□□ -1.5
CD44-228ENST00000528455 SLC45A2Q9UMX9 530 aa5.7□□□□□ -1.5
CD44-228ENST00000528455 TIMM9Q9Y5J7 89 aa5.7□□□□□ -1.5
CD44-228ENST00000528455 TRRAPQ9Y4A5 3859 aa5.7□□□□□ -1.5
CD44-228ENST00000528455 MGAM2Q2M2H8 2515 aa5.69□□□□□ -1.5
CD44-228ENST00000528455 IGKV1D-37A0A075B6S9 117 aa5.69□□□□□ -1.5
CD44-228ENST00000528455 IGHV3-21A0A0B4J1V1 117 aa5.69□□□□□ -1.5
CD44-228ENST00000528455 KRTAP4-8A0A0G2JLE6 195 aa5.69□□□□□ -1.5
CD44-228ENST00000528455 SMCO3A2RU48 225 aa5.69□□□□□ -1.5
CD44-228ENST00000528455 GGCTO75223 188 aaKnown RBP5.69□□□□□ -1.5
CD44-228ENST00000528455 IGKV1-17P01599 117 aa5.69□□□□□ -1.5
CD44-228ENST00000528455 LGALS1P09382 135 aaKnown RBP5.69□□□□□ -1.5
CD44-228ENST00000528455 SEC11BP0C7V7 166 aa5.69□□□□□ -1.5
CD44-228ENST00000528455 IGLC1P0CG04 106 aa5.69□□□□□ -1.5
CD44-228ENST00000528455 RD3LP0DJH9 198 aa5.69□□□□□ -1.5
CD44-228ENST00000528455 SPP1P10451 314 aa5.69□□□□□ -1.5
CD44-228ENST00000528455 CD28P10747 220 aa5.69□□□□□ -1.5
CD44-228ENST00000528455 OR10J1P30954 320 aa5.69□□□□□ -1.5
CD44-228ENST00000528455 CAMLGP49069 296 aa5.69□□□□□ -1.5
CD44-228ENST00000528455 KRTAP10-2P60368 255 aa5.69□□□□□ -1.5
CD44-228ENST00000528455 RELQ04864 619 aaPredicted RBP5.69□□□□□ -1.5
CD44-228ENST00000528455 Q56UQ5 140 aa5.69□□□□□ -1.5
CD44-228ENST00000528455 PXDC1Q5TGL8 231 aa5.69□□□□□ -1.5
CD44-228ENST00000528455 Q6ZRG5 221 aa5.69□□□□□ -1.5
CD44-228ENST00000528455 GPHB5Q86YW7 130 aa5.69□□□□□ -1.5
CD44-228ENST00000528455 C4orf3Q8WVX3 66 aa5.69□□□□□ -1.5
CD44-228ENST00000528455 PHYHIPLQ96FC7 376 aa5.69□□□□□ -1.5
CD44-228ENST00000528455 MGST2Q99735 147 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms