RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 CHEK1O14757 476 aa9.02□□□□□ -0.97
VPS13D-204ENST00000469054 MPC2O95563 127 aa9.02□□□□□ -0.97
VPS13D-204ENST00000469054 FABP1P07148 127 aa9.02□□□□□ -0.97
VPS13D-204ENST00000469054 PET100P0DJ07 73 aa9.02□□□□□ -0.97
VPS13D-204ENST00000469054 NPPCP23582 126 aa9.02□□□□□ -0.97
VPS13D-204ENST00000469054 P2RY1P47900 373 aa9.02□□□□□ -0.97
VPS13D-204ENST00000469054 SULT1A1P50225 295 aa9.02□□□□□ -0.97
VPS13D-204ENST00000469054 STX12Q86Y82 276 aa9.02□□□□□ -0.97
VPS13D-204ENST00000469054 TMEM217Q8N7C4 229 aa9.02□□□□□ -0.97
VPS13D-204ENST00000469054 OR51G1Q8NGK1 321 aa9.02□□□□□ -0.97
VPS13D-204ENST00000469054 PRR25Q96S07 402 aa9.02□□□□□ -0.97
VPS13D-204ENST00000469054 METTL26Q96S19 204 aa9.02□□□□□ -0.97
VPS13D-204ENST00000469054 RHPN1-AS1Q9BWJ2 59 aa9.02□□□□□ -0.97
VPS13D-204ENST00000469054 SELENOKQ9Y6D0 94 aa9.02□□□□□ -0.97
VPS13D-204ENST00000469054 IGHV3-49A0A0A0MS15 119 aa9.01□□□□□ -0.97
VPS13D-204ENST00000469054 WI2-2373I1.2A0A1W2PRP0 233 aa9.01□□□□□ -0.97
VPS13D-204ENST00000469054 IL4P05112 153 aa9.01□□□□□ -0.97
VPS13D-204ENST00000469054 CRYBB3P26998 211 aa9.01□□□□□ -0.97
VPS13D-204ENST00000469054 S100A11P31949 105 aa9.01□□□□□ -0.97
VPS13D-204ENST00000469054 BMI1P35226 326 aa9.01□□□□□ -0.97
VPS13D-204ENST00000469054 SLC38A11Q08AI6 406 aa9.01□□□□□ -0.97
VPS13D-204ENST00000469054 RBPMS2Q6ZRY4 209 aaKnown RBP9.01□□□□□ -0.97
VPS13D-204ENST00000469054 TMEM61Q8N0U2 210 aa9.01□□□□□ -0.97
VPS13D-204ENST00000469054 RNF125Q96EQ8 232 aa9.01□□□□□ -0.97
VPS13D-204ENST00000469054 SLC25A31Q9H0C2 315 aa9.01□□□□□ -0.97
VPS13D-204ENST00000469054 VSIRQ9H7M9 311 aa9.01□□□□□ -0.97
VPS13D-204ENST00000469054 FBN3Q75N90 2809 aa9.01□□□□□ -0.97
VPS13D-204ENST00000469054 DNAH3Q8TD57 4116 aa9□□□□□ -0.97
VPS13D-204ENST00000469054 IGHV3OR16-13A0A075B7E8 117 aa9□□□□□ -0.97
VPS13D-204ENST00000469054 IGHV3-74A0A0B4J1X5 117 aa9□□□□□ -0.97
VPS13D-204ENST00000469054 TRAV25A0A0B4J276 109 aa9□□□□□ -0.97
VPS13D-204ENST00000469054 A0A1W2PS18 150 aa9□□□□□ -0.97
VPS13D-204ENST00000469054 ZNF785A8K8V0 405 aa9□□□□□ -0.97
VPS13D-204ENST00000469054 K7EIL1 84 aa9□□□□□ -0.97
VPS13D-204ENST00000469054 CFDP00746 253 aaPredicted RBP9□□□□□ -0.97
VPS13D-204ENST00000469054 APOHP02749 345 aaPredicted RBP9□□□□□ -0.97
VPS13D-204ENST00000469054 GIPP09681 153 aaPredicted RBP9□□□□□ -0.97
VPS13D-204ENST00000469054 HBG1P69891 147 aa9□□□□□ -0.97
VPS13D-204ENST00000469054 HBG2P69892 147 aa9□□□□□ -0.97
VPS13D-204ENST00000469054 EWSR1Q01844 656 aaKnown RBP eCLIP9□□□□□ -0.97
VPS13D-204ENST00000469054 OR2F1Q13607 317 aa9□□□□□ -0.97
VPS13D-204ENST00000469054 USF2Q15853 346 aaPredicted RBP9□□□□□ -0.97
VPS13D-204ENST00000469054 LAMTOR1Q6IAA8 161 aa9□□□□□ -0.97
VPS13D-204ENST00000469054 TEPPQ6URK8 271 aa9□□□□□ -0.97
VPS13D-204ENST00000469054 ASB13Q8WXK3 278 aa9□□□□□ -0.97
VPS13D-204ENST00000469054 ST8SIA2Q92186 375 aa9□□□□□ -0.97
VPS13D-204ENST00000469054 RNF2Q99496 336 aa9□□□□□ -0.97
VPS13D-204ENST00000469054 MBD2Q9UBB5 411 aa9□□□□□ -0.97
VPS13D-204ENST00000469054 LSM4Q9Y4Z0 139 aaKnown RBP9□□□□□ -0.97
VPS13D-204ENST00000469054 U3KQE9 123 aa9□□□□□ -0.97
VPS13D-204ENST00000469054 NOTCH1P46531 2555 aa9□□□□□ -0.97
VPS13D-204ENST00000469054 NBEAL1Q6ZS30 2694 aa8.99□□□□□ -0.97
VPS13D-204ENST00000469054 IGHV3-66A0A0C4DH42 116 aa8.99□□□□□ -0.97
VPS13D-204ENST00000469054 HNRNPCP07910 306 aaKnown RBP eCLIP8.99□□□□□ -0.97
VPS13D-204ENST00000469054 GATA2P23769 480 aaPredicted RBP8.99□□□□□ -0.97
VPS13D-204ENST00000469054 NHLH2Q02577 135 aa8.99□□□□□ -0.97
VPS13D-204ENST00000469054 BAXQ07812 192 aa8.99□□□□□ -0.97
VPS13D-204ENST00000469054 GUCA2BQ16661 112 aa8.99□□□□□ -0.97
VPS13D-204ENST00000469054 ATP6V1FQ16864 119 aa8.99□□□□□ -0.97
VPS13D-204ENST00000469054 VWC2Q2TAL6 325 aa8.99□□□□□ -0.97
VPS13D-204ENST00000469054 TMEM182Q6ZP80 229 aaPredicted RBP8.99□□□□□ -0.97
VPS13D-204ENST00000469054 CYP2G1PQ6ZSU1 146 aa8.99□□□□□ -0.97
VPS13D-204ENST00000469054 LILRB2Q8N423 598 aa8.99□□□□□ -0.97
VPS13D-204ENST00000469054 BPIFCQ8NFQ6 507 aa8.99□□□□□ -0.97
VPS13D-204ENST00000469054 THAP6Q8TBB0 222 aa8.99□□□□□ -0.97
VPS13D-204ENST00000469054 MRAPQ8TCY5 172 aa8.99□□□□□ -0.97
VPS13D-204ENST00000469054 NARS2Q96I59 477 aaKnown RBP8.99□□□□□ -0.97
VPS13D-204ENST00000469054 PBDC1Q9BVG4 233 aa8.99□□□□□ -0.97
VPS13D-204ENST00000469054 TMEM231Q9H6L2 316 aa8.99□□□□□ -0.97
VPS13D-204ENST00000469054 UQCC1Q9NVA1 299 aa8.99□□□□□ -0.97
VPS13D-204ENST00000469054 RABAC1Q9UI14 185 aa8.99□□□□□ -0.97
VPS13D-204ENST00000469054 TSPAN4O14817 238 aa8.98□□□□□ -0.97
VPS13D-204ENST00000469054 CD5P06127 495 aa8.98□□□□□ -0.97
VPS13D-204ENST00000469054 LYL1P12980 280 aa8.98□□□□□ -0.97
VPS13D-204ENST00000469054 RAP2BP61225 183 aa8.98□□□□□ -0.97
VPS13D-204ENST00000469054 LYZP61626 148 aa8.98□□□□□ -0.97
VPS13D-204ENST00000469054 FGL1Q08830 312 aa8.98□□□□□ -0.97
VPS13D-204ENST00000469054 FAM90A2PQ658T7 463 aa8.98□□□□□ -0.97
VPS13D-204ENST00000469054 SPAG8Q99932 426 aaPredicted RBP8.98□□□□□ -0.97
VPS13D-204ENST00000469054 TMEM147Q9BVK8 224 aa8.98□□□□□ -0.97
VPS13D-204ENST00000469054 AGPAT2O15120 278 aa8.97□□□□□ -0.97
VPS13D-204ENST00000469054 DFFBO76075 338 aa8.97□□□□□ -0.97
VPS13D-204ENST00000469054 RPL12P30050 165 aaKnown RBP8.97□□□□□ -0.97
VPS13D-204ENST00000469054 EIF2B2P49770 351 aaKnown RBP8.97□□□□□ -0.97
VPS13D-204ENST00000469054 SELENOTP62341 195 aa8.97□□□□□ -0.97
VPS13D-204ENST00000469054 DEFB121Q5J5C9 76 aa8.97□□□□□ -0.97
VPS13D-204ENST00000469054 TCF24Q7RTU0 167 aa8.97□□□□□ -0.97
VPS13D-204ENST00000469054 GTSCR1Q86UQ5 136 aa8.97□□□□□ -0.97
VPS13D-204ENST00000469054 Q8N1Y9 231 aa8.97□□□□□ -0.97
VPS13D-204ENST00000469054 OR5C1Q8NGR4 320 aa8.97□□□□□ -0.97
VPS13D-204ENST00000469054 GRAMD2BQ96HH9 432 aa8.97□□□□□ -0.97
VPS13D-204ENST00000469054 PFDN2Q9UHV9 154 aa8.97□□□□□ -0.97
VPS13D-204ENST00000469054 WDR83OSQ9Y284 106 aa8.97□□□□□ -0.97
VPS13D-204ENST00000469054 BUB3O43684 328 aa8.96□□□□□ -0.98
VPS13D-204ENST00000469054 ORM2P19652 201 aa8.96□□□□□ -0.98
VPS13D-204ENST00000469054 NUP62P37198 522 aaPredicted RBP8.96□□□□□ -0.98
VPS13D-204ENST00000469054 SMCPP49901 116 aaPredicted RBP8.96□□□□□ -0.98
VPS13D-204ENST00000469054 PLP1P60201 277 aa8.96□□□□□ -0.98
VPS13D-204ENST00000469054 RAB31Q13636 194 aa8.96□□□□□ -0.98
VPS13D-204ENST00000469054 CLINT1Q14677 625 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 133.7 ms