RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 SPG11Q96JI7 2443 aa16.32■□□□□ 0.2
USP39-203ENST00000409470 IGHV1-69DA0A0B4J2H0 117 aa16.32■□□□□ 0.2
USP39-203ENST00000409470 IGHV1-69P01742 117 aa16.32■□□□□ 0.2
USP39-203ENST00000409470 CLEC12BQ2HXU8 276 aa16.32■□□□□ 0.2
USP39-203ENST00000409470 A1L4Q6 167 aa16.31■□□□□ 0.2
USP39-203ENST00000409470 SRP14P37108 136 aaKnown RBP16.31■□□□□ 0.2
USP39-203ENST00000409470 AKR1D1P51857 326 aa16.31■□□□□ 0.2
USP39-203ENST00000409470 CENPWQ5EE01 88 aa16.31■□□□□ 0.2
USP39-203ENST00000409470 KCNIP4Q6PIL6 250 aa16.31■□□□□ 0.2
USP39-203ENST00000409470 THYN1Q9P016 225 aa16.31■□□□□ 0.2
USP39-203ENST00000409470 LY96Q9Y6Y9 160 aa16.31■□□□□ 0.2
USP39-203ENST00000409470 TRAV40A0A0B4J280 105 aa16.31■□□□□ 0.2
USP39-203ENST00000409470 TGOLN2O43493 480 aa16.31■□□□□ 0.2
USP39-203ENST00000409470 GNG7O60262 68 aa16.31■□□□□ 0.2
USP39-203ENST00000409470 TRGC2P03986 189 aa16.31■□□□□ 0.2
USP39-203ENST00000409470 EGR2P11161 476 aaPredicted RBP16.31■□□□□ 0.2
USP39-203ENST00000409470 LEMD1Q68G75 181 aa16.31■□□□□ 0.2
USP39-203ENST00000409470 BLNKQ8WV28 456 aa16.31■□□□□ 0.2
USP39-203ENST00000409470 HSPB9Q9BQS6 159 aa16.31■□□□□ 0.2
USP39-203ENST00000409470 A0A1W2PPQ1 181 aa16.3■□□□□ 0.2
USP39-203ENST00000409470 MFAP4P55083 255 aa16.3■□□□□ 0.2
USP39-203ENST00000409470 SRSF1Q07955 248 aaKnown RBP eCLIP16.3■□□□□ 0.23e-6■■■■■ 29.6
USP39-203ENST00000409470 C5orf52A6NGY3 159 aa16.29■□□□□ 0.2
USP39-203ENST00000409470 K7EN84 100 aa16.29■□□□□ 0.2
USP39-203ENST00000409470 DSCR9P59020 149 aa16.29■□□□□ 0.2
USP39-203ENST00000409470 RANP62826 216 aaKnown RBP16.29■□□□□ 0.2
USP39-203ENST00000409470 TEX38Q6PEX7 206 aa16.29■□□□□ 0.2
USP39-203ENST00000409470 BRD3OSQ6XYD6 125 aa16.29■□□□□ 0.2
USP39-203ENST00000409470 ZNF329Q86UD4 541 aa16.29■□□□□ 0.2
USP39-203ENST00000409470 OR10G8Q8NGN5 311 aa16.29■□□□□ 0.2
USP39-203ENST00000409470 PYGO2Q9BRQ0 406 aa16.29■□□□□ 0.2
USP39-203ENST00000409470 TRAV30A0A087WSZ9 112 aa16.29■□□□□ 0.2
USP39-203ENST00000409470 Q56UQ5 140 aa16.29■□□□□ 0.2
USP39-203ENST00000409470 TMUB1Q9BVT8 246 aa16.29■□□□□ 0.2
USP39-203ENST00000409470 SLC25A39Q9BZJ4 359 aaPredicted RBP16.29■□□□□ 0.2
USP39-203ENST00000409470 SVEP1Q4LDE5 3571 aa16.28■□□□□ 0.2
USP39-203ENST00000409470 OR2J3O76001 311 aa16.28■□□□□ 0.2
USP39-203ENST00000409470 TOMM40O96008 361 aa16.28■□□□□ 0.2
USP39-203ENST00000409470 MSMBP08118 114 aa16.28■□□□□ 0.2
USP39-203ENST00000409470 NBEAP1P0C6P0 100 aa16.28■□□□□ 0.2
USP39-203ENST00000409470 C21orf62Q9NYP8 219 aa16.28■□□□□ 0.2
USP39-203ENST00000409470 PPP5D1E7EU14 171 aa16.28■□□□□ 0.2
USP39-203ENST00000409470 NDUFB8O95169 186 aa16.28■□□□□ 0.2
USP39-203ENST00000409470 GP9P14770 177 aa16.28■□□□□ 0.2
USP39-203ENST00000409470 ECSCRQ19T08 205 aa16.28■□□□□ 0.2
USP39-203ENST00000409470 UNQ5815/PRO19632Q6UWF5 114 aa16.28■□□□□ 0.2
USP39-203ENST00000409470 SGMS2Q8NHU3 365 aa16.28■□□□□ 0.2
USP39-203ENST00000409470 MRPL27Q9P0M9 148 aaKnown RBP16.28■□□□□ 0.2
USP39-203ENST00000409470 AP4M1O00189 453 aa16.27■□□□□ 0.2
USP39-203ENST00000409470 FAM3BP58499 235 aaPredicted RBP16.27■□□□□ 0.2
USP39-203ENST00000409470 C7orf69Q9H7B7 122 aa16.27■□□□□ 0.2
USP39-203ENST00000409470 SRD5A3Q9H8P0 318 aa16.27■□□□□ 0.2
USP39-203ENST00000409470 UTP20O75691 2785 aaKnown RBP16.27■□□□□ 0.19
USP39-203ENST00000409470 A0A0U1RQK1 487 aa16.26■□□□□ 0.19
USP39-203ENST00000409470 ATP6V0E1O15342 81 aa16.26■□□□□ 0.19
USP39-203ENST00000409470 GGCTO75223 188 aaKnown RBP16.26■□□□□ 0.19
USP39-203ENST00000409470 IL4P05112 153 aa16.26■□□□□ 0.19
USP39-203ENST00000409470 CNN1P51911 297 aaKnown RBP16.26■□□□□ 0.19
USP39-203ENST00000409470 FABP9Q0Z7S8 132 aa16.26■□□□□ 0.19
USP39-203ENST00000409470 ZNF48Q96MX3 618 aaPredicted RBP16.26■□□□□ 0.19
USP39-203ENST00000409470 IMMP2LQ96T52 175 aa16.26■□□□□ 0.19
USP39-203ENST00000409470 PEX7O00628 323 aa16.26■□□□□ 0.19
USP39-203ENST00000409470 IGHV3-23P01764 117 aa16.26■□□□□ 0.19
USP39-203ENST00000409470 OR5I1Q13606 314 aa16.26■□□□□ 0.19
USP39-203ENST00000409470 TMEM219Q86XT9 240 aa16.26■□□□□ 0.19
USP39-203ENST00000409470 RNF125Q96EQ8 232 aa16.26■□□□□ 0.19
USP39-203ENST00000409470 FBXL7Q9UJT9 491 aa16.26■□□□□ 0.19
USP39-203ENST00000409470 FAM208BQ5VWN6 2430 aa16.25■□□□□ 0.19
USP39-203ENST00000409470 SH2D7A6NKC9 451 aaPredicted RBP16.25■□□□□ 0.19
USP39-203ENST00000409470 UBE2CO00762 179 aa16.25■□□□□ 0.19
USP39-203ENST00000409470 SLC25A5P05141 298 aaKnown RBP16.25■□□□□ 0.19
USP39-203ENST00000409470 IGHV4-38-2P0DP08 117 aa16.25■□□□□ 0.19
USP39-203ENST00000409470 PAX1P15863 534 aa16.25■□□□□ 0.19
USP39-203ENST00000409470 ERVFC1-1P60608 527 aa16.25■□□□□ 0.19
USP39-203ENST00000409470 YPEL3P61236 119 aaPredicted RBP16.25■□□□□ 0.19
USP39-203ENST00000409470 ZNF600Q6ZNG1 722 aa16.25■□□□□ 0.19
USP39-203ENST00000409470 ZNF491Q8N8L2 437 aa16.25■□□□□ 0.19
USP39-203ENST00000409470 FAM110DQ8TAY7 271 aaPredicted RBP16.25■□□□□ 0.19
USP39-203ENST00000409470 TCEAL7Q9BRU2 100 aa16.25■□□□□ 0.19
USP39-203ENST00000409470 PGPA6NDG6 321 aa16.24■□□□□ 0.19
USP39-203ENST00000409470 B4DSR2 109 aa16.24■□□□□ 0.19
USP39-203ENST00000409470 H3BTX0 84 aa16.24■□□□□ 0.19
USP39-203ENST00000409470 HIST1H1BP16401 226 aaKnown RBP16.24■□□□□ 0.19
USP39-203ENST00000409470 TAS2R60P59551 318 aa16.24■□□□□ 0.19
USP39-203ENST00000409470 C5orf56Q8N8D9 126 aa16.24■□□□□ 0.19
USP39-203ENST00000409470 IGF2BP2-AS1Q96M15 143 aa16.24■□□□□ 0.19
USP39-203ENST00000409470 LINC00479Q96M42 142 aa16.24■□□□□ 0.19
USP39-203ENST00000409470 CDC42EP3Q9UKI2 254 aa16.24■□□□□ 0.19
USP39-203ENST00000409470 VPS13CQ709C8 3753 aa16.24■□□□□ 0.19
USP39-203ENST00000409470 EPG5Q9HCE0 2579 aa16.24■□□□□ 0.19
USP39-203ENST00000409470 F8W735 103 aaPredicted RBP16.24■□□□□ 0.19
USP39-203ENST00000409470 HIST1H2BKO60814 126 aa16.24■□□□□ 0.19
USP39-203ENST00000409470 HIST1H2BJP06899 126 aa16.24■□□□□ 0.19
USP39-203ENST00000409470 HIST1H2BOP23527 126 aa16.24■□□□□ 0.19
USP39-203ENST00000409470 HIST1H2BBP33778 126 aa16.24■□□□□ 0.19
USP39-203ENST00000409470 MYCNOSP40205 109 aa16.24■□□□□ 0.19
USP39-203ENST00000409470 NDUFA6P56556 154 aa16.24■□□□□ 0.19
USP39-203ENST00000409470 HIST1H2BDP58876 126 aa16.24■□□□□ 0.19
USP39-203ENST00000409470 HIST1H2BCP62807 126 aa16.24■□□□□ 0.19
USP39-203ENST00000409470 FOXL1Q12952 345 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms