RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 TMEM68Q96MH6 324 aa14.9□□□□□ -0.02
USP39-202ENST00000409025 C21orf62Q9NYP8 219 aa14.9□□□□□ -0.02
USP39-202ENST00000409025 URGCP-MRPS24S4R325 110 aa14.9□□□□□ -0.02
USP39-202ENST00000409025 S4R3C0 116 aa14.9□□□□□ -0.02
USP39-202ENST00000409025 GGTLC3B5MD39 225 aa14.9□□□□□ -0.02
USP39-202ENST00000409025 NDUFB8O95169 186 aa14.9□□□□□ -0.02
USP39-202ENST00000409025 TOMM40O96008 361 aa14.9□□□□□ -0.02
USP39-202ENST00000409025 SUMO1P63165 101 aaKnown RBP14.9□□□□□ -0.02
USP39-202ENST00000409025 FLI1Q01543 452 aaPredicted RBP14.9□□□□□ -0.02
USP39-202ENST00000409025 ZNF343Q6P1L6 599 aa14.9□□□□□ -0.02
USP39-202ENST00000409025 LINC01551Q86U37 167 aa14.9□□□□□ -0.02
USP39-202ENST00000409025 FXYD5Q96DB9 178 aa14.9□□□□□ -0.02
USP39-202ENST00000409025 ANAPC16Q96DE5 110 aa14.9□□□□□ -0.02
USP39-202ENST00000409025 DEFB113Q30KQ7 82 aa14.89□□□□□ -0.03
USP39-202ENST00000409025 Q56UQ5 140 aa14.89□□□□□ -0.03
USP39-202ENST00000409025 Q8WTZ3 238 aa14.89□□□□□ -0.03
USP39-202ENST00000409025 FBXL7Q9UJT9 491 aa14.89□□□□□ -0.03
USP39-202ENST00000409025 CRYBB3P26998 211 aa14.88□□□□□ -0.03
USP39-202ENST00000409025 YPEL3P61236 119 aaPredicted RBP14.88□□□□□ -0.03
USP39-202ENST00000409025 LRRC75A-AS1Q8N1F1 130 aa14.88□□□□□ -0.03
USP39-202ENST00000409025 SH2D7A6NKC9 451 aaPredicted RBP14.88□□□□□ -0.03
USP39-202ENST00000409025 C1orf196B1AJZ1 125 aa14.88□□□□□ -0.03
USP39-202ENST00000409025 H7BYZ3 331 aa14.88□□□□□ -0.03
USP39-202ENST00000409025 SCGB2A1O75556 95 aa14.88□□□□□ -0.03
USP39-202ENST00000409025 AVPP01185 164 aa14.88□□□□□ -0.03
USP39-202ENST00000409025 LOXL1Q08397 574 aaPredicted RBP14.88□□□□□ -0.03
USP39-202ENST00000409025 MRPL27Q9P0M9 148 aaKnown RBP14.88□□□□□ -0.03
USP39-202ENST00000409025 ASH1LQ9NR48 2969 aaKnown RBP14.87□□□□□ -0.03
USP39-202ENST00000409025 TRBV20OR9-2A0A075B6H5 130 aa14.87□□□□□ -0.03
USP39-202ENST00000409025 C9JCJ5 164 aa14.87□□□□□ -0.03
USP39-202ENST00000409025 RPL35P42766 123 aaKnown RBP14.87□□□□□ -0.03
USP39-202ENST00000409025 SLC25A39Q9BZJ4 359 aaPredicted RBP14.87□□□□□ -0.03
USP39-202ENST00000409025 SOX21Q9Y651 276 aaPredicted RBP14.87□□□□□ -0.03
USP39-202ENST00000409025 HELTA6NFD8 242 aa14.86□□□□□ -0.03
USP39-202ENST00000409025 J3QLI3 93 aa14.86□□□□□ -0.03
USP39-202ENST00000409025 RAB5BP61020 215 aa14.86□□□□□ -0.03
USP39-202ENST00000409025 KLK9Q2XQG4 91 aa14.86□□□□□ -0.03
USP39-202ENST00000409025 VN1R17PQ8TDU5 208 aa14.86□□□□□ -0.03
USP39-202ENST00000409025 TXN2Q99757 166 aa14.86□□□□□ -0.03
USP39-202ENST00000409025 AURKAIP1Q9NWT8 199 aaPredicted RBP14.86□□□□□ -0.03
USP39-202ENST00000409025 KLK9Q9UKQ9 250 aa14.86□□□□□ -0.03
USP39-202ENST00000409025 UTP20O75691 2785 aaKnown RBP14.86□□□□□ -0.03
USP39-202ENST00000409025 PGPEP1LA6NFU8 196 aa14.86□□□□□ -0.03
USP39-202ENST00000409025 LINC01548A6NM66 108 aa14.86□□□□□ -0.03
USP39-202ENST00000409025 F8W735 103 aaPredicted RBP14.86□□□□□ -0.03
USP39-202ENST00000409025 H3BUX3 64 aa14.86□□□□□ -0.03
USP39-202ENST00000409025 CXCL1P09341 107 aa14.86□□□□□ -0.03
USP39-202ENST00000409025 ZNF491Q8N8L2 437 aa14.86□□□□□ -0.03
USP39-202ENST00000409025 RNF125Q96EQ8 232 aa14.86□□□□□ -0.03
USP39-202ENST00000409025 OR5B12Q96R08 314 aa14.86□□□□□ -0.03
USP39-202ENST00000409025 ELOVL1Q9BW60 279 aa14.86□□□□□ -0.03
USP39-202ENST00000409025 LY96Q9Y6Y9 160 aa14.86□□□□□ -0.03
USP39-202ENST00000409025 TGIF2-C20orf24A0A0A6YYL0 155 aa14.85□□□□□ -0.03
USP39-202ENST00000409025 WI2-2373I1.2A0A1W2PRP0 233 aa14.85□□□□□ -0.03
USP39-202ENST00000409025 RNF223E7ERA6 249 aa14.85□□□□□ -0.03
USP39-202ENST00000409025 TGFAP01135 160 aa14.85□□□□□ -0.03
USP39-202ENST00000409025 IL4P05112 153 aa14.85□□□□□ -0.03
USP39-202ENST00000409025 NBEAP1P0C6P0 100 aa14.85□□□□□ -0.03
USP39-202ENST00000409025 CD99P14209 185 aa14.85□□□□□ -0.03
USP39-202ENST00000409025 GP9P14770 177 aa14.85□□□□□ -0.03
USP39-202ENST00000409025 FCGR2BP31994 310 aaPredicted RBP14.85□□□□□ -0.03
USP39-202ENST00000409025 LEMD1Q68G75 181 aa14.85□□□□□ -0.03
USP39-202ENST00000409025 OCC1Q8TAD7 63 aa14.85□□□□□ -0.03
USP39-202ENST00000409025 C2CD4CQ8TF44 421 aa14.85□□□□□ -0.03
USP39-202ENST00000409025 LRRK2Q5S007 2527 aa14.85□□□□□ -0.03
USP39-202ENST00000409025 ABCA1O95477 2261 aa14.84□□□□□ -0.03
USP39-202ENST00000409025 A6NDX4 124 aa14.84□□□□□ -0.03
USP39-202ENST00000409025 G3V318 75 aa14.84□□□□□ -0.03
USP39-202ENST00000409025 IGHV3-23P01764 117 aa14.84□□□□□ -0.03
USP39-202ENST00000409025 AMY1AP04745 511 aa14.84□□□□□ -0.03
USP39-202ENST00000409025 LY6EQ16553 131 aa14.84□□□□□ -0.03
USP39-202ENST00000409025 S100A7AQ86SG5 101 aa14.84□□□□□ -0.03
USP39-202ENST00000409025 ZNF329Q86UD4 541 aa14.84□□□□□ -0.03
USP39-202ENST00000409025 BLNKQ8WV28 456 aa14.84□□□□□ -0.03
USP39-202ENST00000409025 TMEM14CQ9P0S9 112 aa14.84□□□□□ -0.03
USP39-202ENST00000409025 MDFIC2A0A1B0GVS7 189 aa14.84□□□□□ -0.03
USP39-202ENST00000409025 PPP1R2P9O14990 202 aa14.84□□□□□ -0.03
USP39-202ENST00000409025 PLA2G2AP14555 144 aa14.84□□□□□ -0.03
USP39-202ENST00000409025 S100PP25815 95 aa14.84□□□□□ -0.03
USP39-202ENST00000409025 RPS10P46783 165 aaKnown RBP14.84□□□□□ -0.03
USP39-202ENST00000409025 GALR1P47211 349 aa14.84□□□□□ -0.03
USP39-202ENST00000409025 Q5PR19 223 aa14.84□□□□□ -0.03
USP39-202ENST00000409025 ZFP82Q8N141 532 aa14.84□□□□□ -0.03
USP39-202ENST00000409025 MAPK1IP1LQ8NDC0 245 aa14.84□□□□□ -0.03
USP39-202ENST00000409025 TCEAL7Q9BRU2 100 aa14.84□□□□□ -0.03
USP39-202ENST00000409025 SHANK2-AS3Q9BTD1 123 aa14.84□□□□□ -0.03
USP39-202ENST00000409025 PITPNC1Q9UKF7 332 aa14.84□□□□□ -0.03
USP39-202ENST00000409025 TRBV9A0A0B4J1U6 114 aa14.83□□□□□ -0.04
USP39-202ENST00000409025 OR2T8A6NH00 312 aa14.83□□□□□ -0.04
USP39-202ENST00000409025 GNG4P50150 75 aa14.83□□□□□ -0.04
USP39-202ENST00000409025 RANP62826 216 aaKnown RBP14.83□□□□□ -0.04
USP39-202ENST00000409025 RHOGP84095 191 aa14.83□□□□□ -0.04
USP39-202ENST00000409025 C15orf32Q32M92 178 aa14.83□□□□□ -0.04
USP39-202ENST00000409025 H3BRN7 92 aa14.82□□□□□ -0.04
USP39-202ENST00000409025 J3QKU1 62 aa14.82□□□□□ -0.04
USP39-202ENST00000409025 M0QZK8 103 aa14.82□□□□□ -0.04
USP39-202ENST00000409025 SNRPCP09234 159 aaKnown RBP14.82□□□□□ -0.04
USP39-202ENST00000409025 HNF1AP20823 631 aa14.82□□□□□ -0.04
USP39-202ENST00000409025 CENPWQ5EE01 88 aa14.82□□□□□ -0.04
USP39-202ENST00000409025 C9orf152Q5JTZ5 239 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 90.1 ms