RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 A0A1W2PPI3 338 aa16.59■□□□□ 0.25
CLK3-202ENST00000395066 ENSAO43768 121 aaKnown RBP16.59■□□□□ 0.25
CLK3-202ENST00000395066 PCP4P48539 62 aa16.59■□□□□ 0.25
CLK3-202ENST00000395066 GDF5OSQ5U4N7 250 aa16.59■□□□□ 0.25
CLK3-202ENST00000395066 ZNF841Q6ZN19 808 aa16.59■□□□□ 0.25
CLK3-202ENST00000395066 OR4C13Q8NGP0 309 aa16.59■□□□□ 0.25
CLK3-202ENST00000395066 FAM57AQ8TBR7 257 aa16.59■□□□□ 0.25
CLK3-202ENST00000395066 PPIAL4EA0A075B759 164 aa16.59■□□□□ 0.25
CLK3-202ENST00000395066 FAM181BA6NEQ2 426 aa16.59■□□□□ 0.25
CLK3-202ENST00000395066 PPIAL4DF5H284 164 aa16.59■□□□□ 0.25
CLK3-202ENST00000395066 PPIAL4FP0DN26 164 aa16.59■□□□□ 0.25
CLK3-202ENST00000395066 FAM231DQ6ZW35 169 aa16.59■□□□□ 0.25
CLK3-202ENST00000395066 LINC00305Q7Z4B0 112 aa16.59■□□□□ 0.25
CLK3-202ENST00000395066 NUP35Q8NFH5 326 aa16.59■□□□□ 0.25
CLK3-202ENST00000395066 TMEM167AQ8TBQ9 72 aa16.59■□□□□ 0.25
CLK3-202ENST00000395066 CACNG8Q8WXS5 425 aa16.59■□□□□ 0.25
CLK3-202ENST00000395066 SSBP4Q9BWG4 385 aaPredicted RBP16.59■□□□□ 0.25
CLK3-202ENST00000395066 M0R2Z0 102 aa16.58■□□□□ 0.25
CLK3-202ENST00000395066 PRB4P10163 310 aaPredicted RBP16.58■□□□□ 0.25
CLK3-202ENST00000395066 GPR6P46095 362 aaPredicted RBP16.58■□□□□ 0.25
CLK3-202ENST00000395066 PTTG1IPP53801 180 aa16.58■□□□□ 0.25
CLK3-202ENST00000395066 NUP37Q8NFH4 326 aa16.58■□□□□ 0.25
CLK3-202ENST00000395066 GRAMD2BQ96HH9 432 aa16.58■□□□□ 0.25
CLK3-202ENST00000395066 LRBAP50851 2863 aa16.58■□□□□ 0.25
CLK3-202ENST00000395066 PEX7O00628 323 aa16.58■□□□□ 0.24
CLK3-202ENST00000395066 CCL25O15444 150 aa16.58■□□□□ 0.24
CLK3-202ENST00000395066 THBDP07204 575 aa16.58■□□□□ 0.24
CLK3-202ENST00000395066 CNTFRP26992 372 aa16.58■□□□□ 0.24
CLK3-202ENST00000395066 TBR1Q16650 682 aa16.58■□□□□ 0.24
CLK3-202ENST00000395066 EBLN2Q6P2I7 272 aa16.58■□□□□ 0.24
CLK3-202ENST00000395066 FXYD5Q96DB9 178 aa16.58■□□□□ 0.24
CLK3-202ENST00000395066 GSX1Q9H4S2 264 aaPredicted RBP16.58■□□□□ 0.24
CLK3-202ENST00000395066 TRAV9-2A0A087WT02 112 aa16.57■□□□□ 0.24
CLK3-202ENST00000395066 TCRBV4S1A1TA0A5B7 111 aa16.57■□□□□ 0.24
CLK3-202ENST00000395066 C22orf46C9J442 243 aa16.57■□□□□ 0.24
CLK3-202ENST00000395066 TMEM178BH3BS89 294 aa16.57■□□□□ 0.24
CLK3-202ENST00000395066 KLK10O43240 276 aa16.57■□□□□ 0.24
CLK3-202ENST00000395066 KLF5Q13887 457 aaPredicted RBP16.57■□□□□ 0.24
CLK3-202ENST00000395066 Q56UQ5 140 aa16.57■□□□□ 0.24
CLK3-202ENST00000395066 LEMD1Q68G75 181 aa16.57■□□□□ 0.24
CLK3-202ENST00000395066 NUDT10Q8NFP7 164 aa16.57■□□□□ 0.24
CLK3-202ENST00000395066 NUDT11Q96G61 164 aa16.57■□□□□ 0.24
CLK3-202ENST00000395066 IGHV2-26A0A0B4J1V2 119 aa16.57■□□□□ 0.24
CLK3-202ENST00000395066 C16orf97H3BN30 126 aa16.57■□□□□ 0.24
CLK3-202ENST00000395066 FSTL3O95633 263 aa16.57■□□□□ 0.24
CLK3-202ENST00000395066 OR1B1Q8NGR6 318 aa16.57■□□□□ 0.24
CLK3-202ENST00000395066 TNFRSF19Q9NS68 423 aa16.57■□□□□ 0.24
CLK3-202ENST00000395066 MEF2CQ06413 473 aaPredicted RBP16.56■□□□□ 0.24
CLK3-202ENST00000395066 RNASEKQ6P5S7 137 aaKnown RBP16.56■□□□□ 0.24
CLK3-202ENST00000395066 UNQ5815/PRO19632Q6UWF5 114 aa16.56■□□□□ 0.24
CLK3-202ENST00000395066 OR8B3Q8NGG8 313 aa16.56■□□□□ 0.24
CLK3-202ENST00000395066 OR8B2Q96RD0 313 aa16.56■□□□□ 0.24
CLK3-202ENST00000395066 DCHS2Q6V1P9 2916 aa16.56■□□□□ 0.24
CLK3-202ENST00000395066 A0A1W2PN81 502 aa16.56■□□□□ 0.24
CLK3-202ENST00000395066 CAMPP49913 170 aa16.56■□□□□ 0.24
CLK3-202ENST00000395066 MRGPRG-AS1Q2M3A8 158 aa16.56■□□□□ 0.24
CLK3-202ENST00000395066 TMEM30BQ3MIR4 351 aa16.56■□□□□ 0.24
CLK3-202ENST00000395066 ALKBH7Q9BT30 221 aaPredicted RBP16.56■□□□□ 0.24
CLK3-202ENST00000395066 NDUFB3O43676 98 aa16.55■□□□□ 0.24
CLK3-202ENST00000395066 Q6ZVH6 145 aa16.55■□□□□ 0.24
CLK3-202ENST00000395066 ST6GALNAC6Q969X2 333 aa16.55■□□□□ 0.24
CLK3-202ENST00000395066 WASHC3Q9Y3C0 194 aa16.55■□□□□ 0.24
CLK3-202ENST00000395066 UBE2G1P62253 170 aa16.55■□□□□ 0.24
CLK3-202ENST00000395066 PDPNQ86YL7 162 aa16.55■□□□□ 0.24
CLK3-202ENST00000395066 COX11Q9Y6N1 276 aa16.55■□□□□ 0.24
CLK3-202ENST00000395066 VWC2LB2RUY7 222 aa16.54■□□□□ 0.24
CLK3-202ENST00000395066 OR2J3O76001 311 aa16.54■□□□□ 0.24
CLK3-202ENST00000395066 CD24P25063 80 aa16.54■□□□□ 0.24
CLK3-202ENST00000395066 LOXP28300 417 aaPredicted RBP16.54■□□□□ 0.24
CLK3-202ENST00000395066 C2orf70A6NJV1 201 aa16.54■□□□□ 0.24
CLK3-202ENST00000395066 IGLL1P15814 213 aa16.54■□□□□ 0.24
CLK3-202ENST00000395066 ZNF738Q8NE65 137 aa16.54■□□□□ 0.24
CLK3-202ENST00000395066 ZNF318Q5VUA4 2279 aa16.53■□□□□ 0.24
CLK3-202ENST00000395066 HIGD1CA8MV81 97 aa16.53■□□□□ 0.24
CLK3-202ENST00000395066 TOMM40O96008 361 aa16.53■□□□□ 0.24
CLK3-202ENST00000395066 BPIFB3P59826 476 aa16.53■□□□□ 0.24
CLK3-202ENST00000395066 LRRC10Q5BKY1 277 aa16.53■□□□□ 0.24
CLK3-202ENST00000395066 OR1L4Q8NGR5 311 aa16.53■□□□□ 0.24
CLK3-202ENST00000395066 CHRDL1Q9BU40 450 aa16.53■□□□□ 0.24
CLK3-202ENST00000395066 SSUH2Q9Y2M2 353 aa16.53■□□□□ 0.24
CLK3-202ENST00000395066 SLC25A5P05141 298 aaKnown RBP16.53■□□□□ 0.24
CLK3-202ENST00000395066 MALRD1Q5VYJ5 2156 aa16.53■□□□□ 0.24
CLK3-202ENST00000395066 SVEP1Q4LDE5 3571 aa16.53■□□□□ 0.24
CLK3-202ENST00000395066 UBE2V1Q13404 147 aa16.52■□□□□ 0.24
CLK3-202ENST00000395066 LINC00322Q6ZN03 302 aaPredicted RBP16.52■□□□□ 0.24
CLK3-202ENST00000395066 VSTM2AQ8TAG5 236 aa16.52■□□□□ 0.24
CLK3-202ENST00000395066 TMEM186Q96B77 213 aa16.52■□□□□ 0.24
CLK3-202ENST00000395066 PGPA6NDG6 321 aa16.52■□□□□ 0.23
CLK3-202ENST00000395066 HIST1H1EP10412 219 aaKnown RBP16.52■□□□□ 0.23
CLK3-202ENST00000395066 Q71RC1 249 aaPredicted RBP16.52■□□□□ 0.23
CLK3-202ENST00000395066 TCF24Q7RTU0 167 aa16.52■□□□□ 0.23
CLK3-202ENST00000395066 OR4F17Q8NGA8 305 aa16.52■□□□□ 0.23
CLK3-202ENST00000395066 TOX4O94842 621 aa16.51■□□□□ 0.23
CLK3-202ENST00000395066 IGLC7A0M8Q6 106 aa16.51■□□□□ 0.23
CLK3-202ENST00000395066 LYNX1G3V0Z9 82 aa16.51■□□□□ 0.23
CLK3-202ENST00000395066 FAM87AP0C7U9 286 aa16.51■□□□□ 0.23
CLK3-202ENST00000395066 LYNX1P0DP58 116 aa16.51■□□□□ 0.23
CLK3-202ENST00000395066 SUB1P53999 127 aaKnown RBP eCLIP16.51■□□□□ 0.23
CLK3-202ENST00000395066 KIR3DL3Q8N743 410 aa16.51■□□□□ 0.23
CLK3-202ENST00000395066 THAP8Q8NA92 274 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms