RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 C9orf139Q6ZV77 190 aa14.39□□□□□ -0.11
CCDC88C-203ENST00000389856 TTC9CQ8N5M4 171 aa14.39□□□□□ -0.11
CCDC88C-203ENST00000389856 C5orf56Q8N8D9 126 aa14.39□□□□□ -0.11
CCDC88C-203ENST00000389856 PRRC2AP48634 2157 aaKnown RBP14.39□□□□□ -0.11
CCDC88C-203ENST00000389856 H3BUX3 64 aa14.38□□□□□ -0.11
CCDC88C-203ENST00000389856 HIST1H2BKO60814 126 aa14.38□□□□□ -0.11
CCDC88C-203ENST00000389856 GGCTO75223 188 aaKnown RBP14.38□□□□□ -0.11
CCDC88C-203ENST00000389856 TRGC2P03986 189 aa14.38□□□□□ -0.11
CCDC88C-203ENST00000389856 HIST1H2BJP06899 126 aa14.38□□□□□ -0.11
CCDC88C-203ENST00000389856 OR5G3P0C626 314 aa14.38□□□□□ -0.11
CCDC88C-203ENST00000389856 APELAP0DMC3 54 aa14.38□□□□□ -0.11
CCDC88C-203ENST00000389856 HIST1H2BOP23527 126 aa14.38□□□□□ -0.11
CCDC88C-203ENST00000389856 HIST1H2BBP33778 126 aa14.38□□□□□ -0.11
CCDC88C-203ENST00000389856 ATP5G3P48201 142 aa14.38□□□□□ -0.11
CCDC88C-203ENST00000389856 HIST1H2BDP58876 126 aa14.38□□□□□ -0.11
CCDC88C-203ENST00000389856 HIST1H2BCP62807 126 aa14.38□□□□□ -0.11
CCDC88C-203ENST00000389856 HIST2H2BEQ16778 126 aa14.38□□□□□ -0.11
CCDC88C-203ENST00000389856 HIST2H2BFQ5QNW6 126 aaPredicted RBP14.38□□□□□ -0.11
CCDC88C-203ENST00000389856 LINC01551Q86U37 167 aa14.38□□□□□ -0.11
CCDC88C-203ENST00000389856 OR5R1Q8NH85 324 aa14.38□□□□□ -0.11
CCDC88C-203ENST00000389856 SGMS2Q8NHU3 365 aa14.38□□□□□ -0.11
CCDC88C-203ENST00000389856 HIST1H2BHQ93079 126 aa14.38□□□□□ -0.11
CCDC88C-203ENST00000389856 HIST1H2BNQ99877 126 aa14.38□□□□□ -0.11
CCDC88C-203ENST00000389856 HIST1H2BMQ99879 126 aa14.38□□□□□ -0.11
CCDC88C-203ENST00000389856 CELSR2Q9HCU4 2923 aa14.37□□□□□ -0.11
CCDC88C-203ENST00000389856 SCGB2A1O75556 95 aa14.37□□□□□ -0.11
CCDC88C-203ENST00000389856 NDUFB4O95168 129 aa14.37□□□□□ -0.11
CCDC88C-203ENST00000389856 FSHBP01225 129 aa14.37□□□□□ -0.11
CCDC88C-203ENST00000389856 TYMSP04818 313 aa14.37□□□□□ -0.11
CCDC88C-203ENST00000389856 FABP1P07148 127 aa14.37□□□□□ -0.11
CCDC88C-203ENST00000389856 FAM3BP58499 235 aaPredicted RBP14.37□□□□□ -0.11
CCDC88C-203ENST00000389856 UBE2G2P60604 165 aa14.37□□□□□ -0.11
CCDC88C-203ENST00000389856 FBLN7Q53RD9 439 aa14.37□□□□□ -0.11
CCDC88C-203ENST00000389856 THAP8Q8NA92 274 aa14.37□□□□□ -0.11
CCDC88C-203ENST00000389856 WFDC11Q8NEX6 87 aa14.37□□□□□ -0.11
CCDC88C-203ENST00000389856 APCP25054 2843 aa14.37□□□□□ -0.11
CCDC88C-203ENST00000389856 NAV3Q8IVL0 2385 aa14.37□□□□□ -0.11
CCDC88C-203ENST00000389856 A6NDX4 124 aa14.37□□□□□ -0.11
CCDC88C-203ENST00000389856 C9JCJ5 164 aa14.37□□□□□ -0.11
CCDC88C-203ENST00000389856 PPP5D1E7EU14 171 aa14.37□□□□□ -0.11
CCDC88C-203ENST00000389856 OR10J1P30954 320 aa14.37□□□□□ -0.11
CCDC88C-203ENST00000389856 NDUFA6P56556 154 aa14.37□□□□□ -0.11
CCDC88C-203ENST00000389856 FAM78BQ5VT40 261 aa14.37□□□□□ -0.11
CCDC88C-203ENST00000389856 TMEM116Q8NCL8 245 aa14.37□□□□□ -0.11
CCDC88C-203ENST00000389856 OR2T6Q8NHC8 308 aa14.37□□□□□ -0.11
CCDC88C-203ENST00000389856 PIFOQ8TCI5 191 aa14.37□□□□□ -0.11
CCDC88C-203ENST00000389856 FAM103A1Q9BTL3 118 aaKnown RBP14.37□□□□□ -0.11
CCDC88C-203ENST00000389856 FNDC4Q9H6D8 234 aaPredicted RBP14.37□□□□□ -0.11
CCDC88C-203ENST00000389856 SEPSECSQ9HD40 501 aaKnown RBP14.37□□□□□ -0.11
CCDC88C-203ENST00000389856 PLXNB1O43157 2135 aa14.36□□□□□ -0.11
CCDC88C-203ENST00000389856 NPIPB3Q92617 1050 aa14.36□□□□□ -0.11
CCDC88C-203ENST00000389856 CREBBPQ92793 2442 aa14.36□□□□□ -0.11
CCDC88C-203ENST00000389856 TRAV9-1A0A075B6T8 112 aa14.35□□□□□ -0.11
CCDC88C-203ENST00000389856 TCRBV4S1A1TA0A5B7 111 aa14.35□□□□□ -0.11
CCDC88C-203ENST00000389856 PHOX2AO14813 284 aa14.35□□□□□ -0.11
CCDC88C-203ENST00000389856 S100A2P29034 98 aa14.35□□□□□ -0.11
CCDC88C-203ENST00000389856 MFAP2P55001 183 aa14.35□□□□□ -0.11
CCDC88C-203ENST00000389856 FOXL1Q12952 345 aa14.35□□□□□ -0.11
CCDC88C-203ENST00000389856 TMEM219Q86XT9 240 aa14.35□□□□□ -0.11
CCDC88C-203ENST00000389856 OR1L4Q8NGR5 311 aa14.35□□□□□ -0.11
CCDC88C-203ENST00000389856 FAM110DQ8TAY7 271 aaPredicted RBP14.35□□□□□ -0.11
CCDC88C-203ENST00000389856 PFDN5Q99471 154 aa14.35□□□□□ -0.11
CCDC88C-203ENST00000389856 TRGV9Q99603 122 aa14.35□□□□□ -0.11
CCDC88C-203ENST00000389856 TRGC1P0CF51 173 aa14.34□□□□□ -0.11
CCDC88C-203ENST00000389856 NDPQ00604 133 aa14.34□□□□□ -0.11
CCDC88C-203ENST00000389856 UNQ5815/PRO19632Q6UWF5 114 aa14.34□□□□□ -0.11
CCDC88C-203ENST00000389856 TMUB1Q9BVT8 246 aa14.34□□□□□ -0.11
CCDC88C-203ENST00000389856 YTHDF2Q9Y5A9 579 aaKnown RBP14.34□□□□□ -0.11
CCDC88C-203ENST00000389856 MDFIC2A0A1B0GVS7 189 aa14.33□□□□□ -0.11
CCDC88C-203ENST00000389856 I3L2K1 104 aa14.33□□□□□ -0.11
CCDC88C-203ENST00000389856 C8orf88P0DMB2 117 aa14.33□□□□□ -0.11
CCDC88C-203ENST00000389856 LY6EQ16553 131 aa14.33□□□□□ -0.11
CCDC88C-203ENST00000389856 MLANAQ16655 118 aa14.33□□□□□ -0.11
CCDC88C-203ENST00000389856 DEFB112Q30KQ8 113 aa14.33□□□□□ -0.11
CCDC88C-203ENST00000389856 SPATA31B1PQ5VZV4 182 aa14.33□□□□□ -0.11
CCDC88C-203ENST00000389856 OR4X1Q8NH49 305 aa14.33□□□□□ -0.11
CCDC88C-203ENST00000389856 FRZBQ92765 325 aa14.33□□□□□ -0.11
CCDC88C-203ENST00000389856 HSPB9Q9BQS6 159 aa14.33□□□□□ -0.11
CCDC88C-203ENST00000389856 TNFRSF19Q9NS68 423 aa14.33□□□□□ -0.11
CCDC88C-203ENST00000389856 GAR1Q9NY12 217 aaKnown RBP14.33□□□□□ -0.11
CCDC88C-203ENST00000389856 IGLV11-55A0A075B6I3 123 aa14.33□□□□□ -0.12
CCDC88C-203ENST00000389856 IGKV1OR2-108A0A075B7D4 117 aa14.33□□□□□ -0.12
CCDC88C-203ENST00000389856 TRAV30A0A087WSZ9 112 aa14.33□□□□□ -0.12
CCDC88C-203ENST00000389856 A0A1W2PRE2 83 aa14.33□□□□□ -0.12
CCDC88C-203ENST00000389856 ATP6V0E1O15342 81 aa14.33□□□□□ -0.12
CCDC88C-203ENST00000389856 ASPHD1Q5U4P2 390 aa14.33□□□□□ -0.12
CCDC88C-203ENST00000389856 MIR17HGQ75NE6 70 aa14.33□□□□□ -0.12
CCDC88C-203ENST00000389856 SMAD7O15105 426 aaKnown RBP14.32□□□□□ -0.12
CCDC88C-203ENST00000389856 CRIP2P52943 208 aaPredicted RBP14.32□□□□□ -0.12
CCDC88C-203ENST00000389856 ECSCRQ19T08 205 aa14.32□□□□□ -0.12
CCDC88C-203ENST00000389856 DNLZQ5SXM8 178 aa14.32□□□□□ -0.12
CCDC88C-203ENST00000389856 SFRP2Q96HF1 295 aa14.32□□□□□ -0.12
CCDC88C-203ENST00000389856 DNAJC4Q9NNZ3 241 aa14.32□□□□□ -0.12
CCDC88C-203ENST00000389856 SCO2A0A1W2PP80 73 aa14.31□□□□□ -0.12
CCDC88C-203ENST00000389856 EGR2P11161 476 aaPredicted RBP14.31□□□□□ -0.12
CCDC88C-203ENST00000389856 ZNF48Q96MX3 618 aaPredicted RBP14.31□□□□□ -0.12
CCDC88C-203ENST00000389856 IER3P46695 156 aa14.3□□□□□ -0.12
CCDC88C-203ENST00000389856 MFAP4P55083 255 aa14.3□□□□□ -0.12
CCDC88C-203ENST00000389856 KLK9Q2XQG4 91 aa14.3□□□□□ -0.12
CCDC88C-203ENST00000389856 COA6Q5JTJ3 125 aaKnown RBP14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 86.4 ms