RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 DKK4Q9UBT3 224 aa14.88□□□□□ -0.03
CCDC3-201ENST00000378825 IGHV2-70DA0A0C4DH43 119 aa14.87□□□□□ -0.03
CCDC3-201ENST00000378825 PRR33A8MZF0 331 aa14.87□□□□□ -0.03
CCDC3-201ENST00000378825 SLC25A5P05141 298 aaKnown RBP14.87□□□□□ -0.03
CCDC3-201ENST00000378825 CCL3L1P16619 93 aa14.87□□□□□ -0.03
CCDC3-201ENST00000378825 SARAFQ96BY9 339 aa14.87□□□□□ -0.03
CCDC3-201ENST00000378825 ADTRPQ96IZ2 230 aa14.87□□□□□ -0.03
CCDC3-201ENST00000378825 MRPL32Q9BYC8 188 aaKnown RBP14.87□□□□□ -0.03
CCDC3-201ENST00000378825 TPSG1Q9NRR2 321 aa14.87□□□□□ -0.03
CCDC3-201ENST00000378825 WASHC3Q9Y3C0 194 aa14.87□□□□□ -0.03
CCDC3-201ENST00000378825 PGPA6NDG6 321 aa14.87□□□□□ -0.03
CCDC3-201ENST00000378825 ITGB1BP1O14713 200 aa14.87□□□□□ -0.03
CCDC3-201ENST00000378825 TOX4O94842 621 aa14.87□□□□□ -0.03
CCDC3-201ENST00000378825 NUDT3O95989 172 aa14.87□□□□□ -0.03
CCDC3-201ENST00000378825 C22orf34Q6ZV56 151 aa14.87□□□□□ -0.03
CCDC3-201ENST00000378825 ZCCHC24Q8N2G6 241 aaKnown RBP14.87□□□□□ -0.03
CCDC3-201ENST00000378825 C19orf24Q9BVV8 132 aa14.87□□□□□ -0.03
CCDC3-201ENST00000378825 PCNX1Q96RV3 2341 aa14.87□□□□□ -0.03
CCDC3-201ENST00000378825 OR2T8A6NH00 312 aa14.86□□□□□ -0.03
CCDC3-201ENST00000378825 DLL1O00548 723 aa14.86□□□□□ -0.03
CCDC3-201ENST00000378825 C1orf162Q8NEQ5 155 aaPredicted RBP14.86□□□□□ -0.03
CCDC3-201ENST00000378825 RPUSD1Q9UJJ7 312 aaKnown RBP14.86□□□□□ -0.03
CCDC3-201ENST00000378825 SELENOKQ9Y6D0 94 aa14.86□□□□□ -0.03
CCDC3-201ENST00000378825 SEM1Q6ZVN7 128 aa14.86□□□□□ -0.03
CCDC3-201ENST00000378825 ZNF714Q96N38 554 aa14.86□□□□□ -0.03
CCDC3-201ENST00000378825 ANKRD11Q6UB99 2663 aaPredicted RBP14.86□□□□□ -0.03
CCDC3-201ENST00000378825 TRAV8-1A0A0A6YYK1 113 aa14.86□□□□□ -0.03
CCDC3-201ENST00000378825 MUC21A0A0G2JKD1 596 aa14.86□□□□□ -0.03
CCDC3-201ENST00000378825 MUC21A0A140T8X8 626 aa14.86□□□□□ -0.03
CCDC3-201ENST00000378825 MUC21Q5SSG8 566 aa14.86□□□□□ -0.03
CCDC3-201ENST00000378825 ETFRF1Q6IPR1 90 aa14.86□□□□□ -0.03
CCDC3-201ENST00000378825 RITA1Q96K30 269 aa14.86□□□□□ -0.03
CCDC3-201ENST00000378825 GSX1Q9H4S2 264 aaPredicted RBP14.86□□□□□ -0.03
CCDC3-201ENST00000378825 PROCRQ9UNN8 238 aa14.86□□□□□ -0.03
CCDC3-201ENST00000378825 CBY3A6NI87 242 aa14.85□□□□□ -0.03
CCDC3-201ENST00000378825 RASL11AQ6T310 242 aa14.85□□□□□ -0.03
CCDC3-201ENST00000378825 PLSCR4Q9NRQ2 329 aa14.85□□□□□ -0.03
CCDC3-201ENST00000378825 EPDR1Q9UM22 224 aa14.85□□□□□ -0.03
CCDC3-201ENST00000378825 C22orf46C9J442 243 aa14.85□□□□□ -0.03
CCDC3-201ENST00000378825 SYS1-DBNDD2H3BUS1 97 aa14.85□□□□□ -0.03
CCDC3-201ENST00000378825 TAX1BP3O14907 124 aa14.85□□□□□ -0.03
CCDC3-201ENST00000378825 HIST1H1EP10412 219 aaKnown RBP14.85□□□□□ -0.03
CCDC3-201ENST00000378825 MYCNOSP40205 109 aa14.85□□□□□ -0.03
CCDC3-201ENST00000378825 MZT1Q08AG7 82 aa14.85□□□□□ -0.03
CCDC3-201ENST00000378825 OR1B1Q8NGR6 318 aa14.85□□□□□ -0.03
CCDC3-201ENST00000378825 K7EP13 123 aa14.84□□□□□ -0.03
CCDC3-201ENST00000378825 SNAI2O43623 268 aa14.84□□□□□ -0.03
CCDC3-201ENST00000378825 ERHP84090 104 aaKnown RBP14.84□□□□□ -0.03
CCDC3-201ENST00000378825 ANKRD39Q53RE8 183 aa14.84□□□□□ -0.03
CCDC3-201ENST00000378825 HCP5Q6MZN7 132 aa14.84□□□□□ -0.03
CCDC3-201ENST00000378825 IGFL2Q6UWQ7 119 aa14.84□□□□□ -0.03
CCDC3-201ENST00000378825 GAL3ST2Q9H3Q3 398 aa14.84□□□□□ -0.03
CCDC3-201ENST00000378825 BSNQ9UPA5 3926 aa14.84□□□□□ -0.03
CCDC3-201ENST00000378825 FCN3O75636 299 aa14.84□□□□□ -0.03
CCDC3-201ENST00000378825 CSN3P07498 182 aa14.84□□□□□ -0.03
CCDC3-201ENST00000378825 HBBP68871 147 aa14.84□□□□□ -0.03
CCDC3-201ENST00000378825 RBMXL3Q8N7X1 1067 aaKnown RBP14.84□□□□□ -0.03
CCDC3-201ENST00000378825 ZNF430Q9H8G1 570 aaPredicted RBP14.84□□□□□ -0.03
CCDC3-201ENST00000378825 RNF7Q9UBF6 113 aa14.84□□□□□ -0.03
CCDC3-201ENST00000378825 TCRBV4S1A1TA0A5B7 111 aa14.83□□□□□ -0.04
CCDC3-201ENST00000378825 PSG1P11464 419 aa14.83□□□□□ -0.04
CCDC3-201ENST00000378825 TMEM177Q53S58 311 aa14.83□□□□□ -0.04
CCDC3-201ENST00000378825 PDPNQ86YL7 162 aa14.83□□□□□ -0.04
CCDC3-201ENST00000378825 POLEQ07864 2286 aa14.83□□□□□ -0.04
CCDC3-201ENST00000378825 LEPROTL1O95214 131 aa14.83□□□□□ -0.04
CCDC3-201ENST00000378825 CACNG8Q8WXS5 425 aa14.83□□□□□ -0.04
CCDC3-201ENST00000378825 A0A087X0K7 114 aa14.82□□□□□ -0.04
CCDC3-201ENST00000378825 FAM87AP0C7U9 286 aa14.82□□□□□ -0.04
CCDC3-201ENST00000378825 PRB3Q04118 309 aaPredicted RBP14.82□□□□□ -0.04
CCDC3-201ENST00000378825 RPP21Q9H633 154 aaKnown RBP14.82□□□□□ -0.04
CCDC3-201ENST00000378825 LOC102724200A0A096LPH7 203 aaPredicted RBP14.82□□□□□ -0.04
CCDC3-201ENST00000378825 IGHV1-46P01743 117 aa14.82□□□□□ -0.04
CCDC3-201ENST00000378825 CCL8P80075 99 aa14.82□□□□□ -0.04
CCDC3-201ENST00000378825 TNFAIP6P98066 277 aaPredicted RBP14.82□□□□□ -0.04
CCDC3-201ENST00000378825 BVES-AS1Q5T3Y7 98 aa14.82□□□□□ -0.04
CCDC3-201ENST00000378825 FAM222BQ8WU58 562 aa14.82□□□□□ -0.04
CCDC3-201ENST00000378825 MLST8Q9BVC4 326 aa14.82□□□□□ -0.04
CCDC3-201ENST00000378825 PTPRZ1P23471 2315 aaPredicted RBP14.82□□□□□ -0.04
CCDC3-201ENST00000378825 IGHV3-72A0A0B4J1Y9 119 aa14.81□□□□□ -0.04
CCDC3-201ENST00000378825 CDKN1BP46527 198 aa14.81□□□□□ -0.04
CCDC3-201ENST00000378825 LDLRAD2Q5SZI1 272 aa14.81□□□□□ -0.04
CCDC3-201ENST00000378825 ZNF474Q6S9Z5 364 aaPredicted RBP14.81□□□□□ -0.04
CCDC3-201ENST00000378825 ZNF788Q6ZQV5 615 aa14.81□□□□□ -0.04
CCDC3-201ENST00000378825 DLX1P56177 255 aa14.81□□□□□ -0.04
CCDC3-201ENST00000378825 ZNF833PQ6ZTB9 187 aa14.81□□□□□ -0.04
CCDC3-201ENST00000378825 CIARTQ8N365 385 aaPredicted RBP14.81□□□□□ -0.04
CCDC3-201ENST00000378825 GPR82Q96P67 336 aa14.81□□□□□ -0.04
CCDC3-201ENST00000378825 ACACAQ13085 2346 aa14.8□□□□□ -0.04
CCDC3-201ENST00000378825 A0A1W2PPI3 338 aa14.8□□□□□ -0.04
CCDC3-201ENST00000378825 K7EM74 188 aa14.8□□□□□ -0.04
CCDC3-201ENST00000378825 SLC25A17O43808 307 aa14.8□□□□□ -0.04
CCDC3-201ENST00000378825 TCTAP57738 103 aa14.8□□□□□ -0.04
CCDC3-201ENST00000378825 LRRC10Q5BKY1 277 aa14.8□□□□□ -0.04
CCDC3-201ENST00000378825 AMMECR1LQ6DCA0 310 aa14.8□□□□□ -0.04
CCDC3-201ENST00000378825 OR1L4Q8NGR5 311 aa14.8□□□□□ -0.04
CCDC3-201ENST00000378825 FLYWCH2Q96CP2 140 aaKnown RBP14.8□□□□□ -0.04
CCDC3-201ENST00000378825 CRXO43186 299 aaPredicted RBP14.79□□□□□ -0.04
CCDC3-201ENST00000378825 P01737 135 aa14.79□□□□□ -0.04
CCDC3-201ENST00000378825 NBEAP1P0C6P0 100 aa14.79□□□□□ -0.04
CCDC3-201ENST00000378825 BPIFB3P59826 476 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms