RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 IL36BQ9NZH7 164 aa12.86□□□□□ -0.35
PTPRF-201ENST00000359947 A0A1B0GV72 72 aa12.86□□□□□ -0.35
PTPRF-201ENST00000359947 PRADC1Q9BSG0 188 aa12.86□□□□□ -0.35
PTPRF-201ENST00000359947 CD28P10747 220 aa12.85□□□□□ -0.35
PTPRF-201ENST00000359947 TEX38Q6PEX7 206 aa12.85□□□□□ -0.35
PTPRF-201ENST00000359947 IL17RELQ6ZVW7 336 aa12.85□□□□□ -0.35
PTPRF-201ENST00000359947 TRBV9A0A0B4J1U6 114 aa12.85□□□□□ -0.35
PTPRF-201ENST00000359947 SLC25A20O43772 301 aa12.85□□□□□ -0.35
PTPRF-201ENST00000359947 GATA4P43694 442 aa12.85□□□□□ -0.35
PTPRF-201ENST00000359947 LRRK1Q38SD2 2015 aa12.85□□□□□ -0.35
PTPRF-201ENST00000359947 IGLV3-32A0A0A0MS00 114 aa12.85□□□□□ -0.35
PTPRF-201ENST00000359947 NEUROG3Q9Y4Z2 214 aa12.85□□□□□ -0.35
PTPRF-201ENST00000359947 C10orf126Q8N4M7 172 aa12.85□□□□□ -0.35
PTPRF-201ENST00000359947 C14orf144Q96I85 54 aa12.85□□□□□ -0.35
PTPRF-201ENST00000359947 TRGV11A0A075B6L2 103 aa12.85□□□□□ -0.35
PTPRF-201ENST00000359947 CD177Q8N6Q3 437 aa12.85□□□□□ -0.35
PTPRF-201ENST00000359947 NOTCH3Q9UM47 2321 aa12.84□□□□□ -0.35
PTPRF-201ENST00000359947 CD8AP01732 235 aa12.84□□□□□ -0.35
PTPRF-201ENST00000359947 TICRRQ7Z2Z1 1910 aa12.84□□□□□ -0.35
PTPRF-201ENST00000359947 K7ENP7 123 aa12.84□□□□□ -0.35
PTPRF-201ENST00000359947 NPC2P61916 151 aa12.84□□□□□ -0.35
PTPRF-201ENST00000359947 DEFB130BP0DP73 79 aa12.84□□□□□ -0.35
PTPRF-201ENST00000359947 DEFB130AP0DP74 79 aa12.84□□□□□ -0.35
PTPRF-201ENST00000359947 IGFBP3P17936 291 aaPredicted RBP12.84□□□□□ -0.35
PTPRF-201ENST00000359947 GTF3C1Q12789 2109 aa12.84□□□□□ -0.35
PTPRF-201ENST00000359947 SMIM13P0DJ93 91 aa12.84□□□□□ -0.35
PTPRF-201ENST00000359947 IGFL4Q6B9Z1 124 aa12.84□□□□□ -0.35
PTPRF-201ENST00000359947 RPUSD1Q9UJJ7 312 aaKnown RBP12.84□□□□□ -0.35
PTPRF-201ENST00000359947 PMS2P5A8MQ11 134 aa12.84□□□□□ -0.35
PTPRF-201ENST00000359947 LAIR2Q6ISS4 152 aa12.84□□□□□ -0.35
PTPRF-201ENST00000359947 ZNF257Q9Y2Q1 563 aa12.84□□□□□ -0.35
PTPRF-201ENST00000359947 SAA4P35542 130 aa12.83□□□□□ -0.35
PTPRF-201ENST00000359947 TDGF1P3P51864 188 aa12.83□□□□□ -0.36
PTPRF-201ENST00000359947 MDS2Q8NDY4 140 aa12.83□□□□□ -0.36
PTPRF-201ENST00000359947 PMCHL2Q9BQD1 86 aa12.83□□□□□ -0.36
PTPRF-201ENST00000359947 PSG8Q9UQ74 426 aa12.83□□□□□ -0.36
PTPRF-201ENST00000359947 VENTXO95231 258 aa12.83□□□□□ -0.36
PTPRF-201ENST00000359947 RNF114Q9Y508 228 aa12.83□□□□□ -0.36
PTPRF-201ENST00000359947 GZMBP10144 247 aa12.83□□□□□ -0.36
PTPRF-201ENST00000359947 EPDR1Q9UM22 224 aa12.83□□□□□ -0.36
PTPRF-201ENST00000359947 EXOC3-AS1Q8N2X6 119 aa12.83□□□□□ -0.36
PTPRF-201ENST00000359947 DPRXA6NFQ7 191 aa12.83□□□□□ -0.36
PTPRF-201ENST00000359947 C5orf24Q7Z6I8 188 aa12.83□□□□□ -0.36
PTPRF-201ENST00000359947 DDTP30046 118 aa12.82□□□□□ -0.36
PTPRF-201ENST00000359947 CKS1BP61024 79 aa12.82□□□□□ -0.36
PTPRF-201ENST00000359947 PRCDQ00LT1 54 aa12.82□□□□□ -0.36
PTPRF-201ENST00000359947 GREB1LQ9C091 1923 aaPredicted RBP12.82□□□□□ -0.36
PTPRF-201ENST00000359947 ZNF474Q6S9Z5 364 aaPredicted RBP12.82□□□□□ -0.36
PTPRF-201ENST00000359947 A0A0A6YYD4 124 aa12.82□□□□□ -0.36
PTPRF-201ENST00000359947 PSPNO60542 156 aa12.82□□□□□ -0.36
PTPRF-201ENST00000359947 C18orf12Q96KH6 178 aa12.82□□□□□ -0.36
PTPRF-201ENST00000359947 E7EQL1 145 aa12.82□□□□□ -0.36
PTPRF-201ENST00000359947 TYMSP04818 313 aa12.82□□□□□ -0.36
PTPRF-201ENST00000359947 CSRP3P50461 194 aa12.82□□□□□ -0.36
PTPRF-201ENST00000359947 SLC25A39Q9BZJ4 359 aaPredicted RBP12.82□□□□□ -0.36
PTPRF-201ENST00000359947 ZNF407Q9C0G0 2248 aa12.82□□□□□ -0.36
PTPRF-201ENST00000359947 SRRM5B3KS81 715 aa12.82□□□□□ -0.36
PTPRF-201ENST00000359947 Q6ZS92 163 aa12.82□□□□□ -0.36
PTPRF-201ENST00000359947 TCF23Q7RTU1 214 aa12.82□□□□□ -0.36
PTPRF-201ENST00000359947 LINC00271P0C7V0 271 aa12.82□□□□□ -0.36
PTPRF-201ENST00000359947 SYNJ2BPP57105 145 aa12.82□□□□□ -0.36
PTPRF-201ENST00000359947 SCRT1Q9BWW7 348 aa12.82□□□□□ -0.36
PTPRF-201ENST00000359947 SLC25A16P16260 332 aa12.81□□□□□ -0.36
PTPRF-201ENST00000359947 RPRMLQ8N4K4 120 aa12.81□□□□□ -0.36
PTPRF-201ENST00000359947 SPAG8Q99932 426 aaPredicted RBP12.81□□□□□ -0.36
PTPRF-201ENST00000359947 KLHDC3Q9BQ90 382 aa12.81□□□□□ -0.36
PTPRF-201ENST00000359947 IGHV4-39P01824 125 aa12.81□□□□□ -0.36
PTPRF-201ENST00000359947 PCP4P48539 62 aa12.81□□□□□ -0.36
PTPRF-201ENST00000359947 LINC00158P58513 81 aa12.81□□□□□ -0.36
PTPRF-201ENST00000359947 SRRM4A7MD48 611 aaKnown RBP12.81□□□□□ -0.36
PTPRF-201ENST00000359947 BUB1B-PAK6H3BSN5 160 aa12.81□□□□□ -0.36
PTPRF-201ENST00000359947 SRSF4Q08170 494 aaKnown RBP12.81□□□□□ -0.36
PTPRF-201ENST00000359947 IGKV1-12A0A0C4DH73 117 aa12.81□□□□□ -0.36
PTPRF-201ENST00000359947 IGKV1D-12P01611 117 aa12.81□□□□□ -0.36
PTPRF-201ENST00000359947 TMEM95Q3KNT9 176 aa12.81□□□□□ -0.36
PTPRF-201ENST00000359947 TMEM8BA6NDV4 472 aa12.81□□□□□ -0.36
PTPRF-201ENST00000359947 IGKV1D-8A0A087WSZ0 117 aa12.8□□□□□ -0.36
PTPRF-201ENST00000359947 CA1P00915 261 aaPredicted RBP12.8□□□□□ -0.36
PTPRF-201ENST00000359947 LINC00205P59089 165 aa12.8□□□□□ -0.36
PTPRF-201ENST00000359947 CFHR3Q02985 330 aa12.8□□□□□ -0.36
PTPRF-201ENST00000359947 SDHCQ99643 169 aaPredicted RBP12.8□□□□□ -0.36
PTPRF-201ENST00000359947 PGPEP1LA6NFU8 196 aa12.8□□□□□ -0.36
PTPRF-201ENST00000359947 PSG1P11464 419 aa12.8□□□□□ -0.36
PTPRF-201ENST00000359947 MRAPQ8TCY5 172 aa12.8□□□□□ -0.36
PTPRF-201ENST00000359947 TNFRSF14Q92956 283 aa12.8□□□□□ -0.36
PTPRF-201ENST00000359947 COQ2Q96H96 371 aa12.8□□□□□ -0.36
PTPRF-201ENST00000359947 A0A1B0GV90 55 aa12.8□□□□□ -0.36
PTPRF-201ENST00000359947 F8VVB4 439 aa12.8□□□□□ -0.36
PTPRF-201ENST00000359947 F8VWA3 439 aa12.8□□□□□ -0.36
PTPRF-201ENST00000359947 OVOL1O14753 267 aa12.8□□□□□ -0.36
PTPRF-201ENST00000359947 MINOS1Q5TGZ0 78 aa12.8□□□□□ -0.36
PTPRF-201ENST00000359947 MINOS1-NBL1R4GNA1 71 aa12.8□□□□□ -0.36
PTPRF-201ENST00000359947 HEPN1Q6WQI6 88 aa12.8□□□□□ -0.36
PTPRF-201ENST00000359947 TRAV3A0A0B4J244 114 aa12.79□□□□□ -0.36
PTPRF-201ENST00000359947 TMEM249Q2WGJ8 235 aa12.79□□□□□ -0.36
PTPRF-201ENST00000359947 S100A7L2Q5SY68 101 aa12.79□□□□□ -0.36
PTPRF-201ENST00000359947 TRAV2A0A0B4J234 112 aa12.79□□□□□ -0.36
PTPRF-201ENST00000359947 IZUMO1RA6ND01 250 aa12.79□□□□□ -0.36
PTPRF-201ENST00000359947 FAM169BQ8N8A8 192 aa12.79□□□□□ -0.36
PTPRF-201ENST00000359947 MBD3L1Q8WWY6 194 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms