RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 LOXL1Q08397 574 aaPredicted RBP3.34□□□□□ -1.87
USH2A-201ENST00000307340 SPACA5Q96QH8 159 aa3.34□□□□□ -1.87
USH2A-201ENST00000307340 TRAV26-1A0A087WT03 109 aa3.34□□□□□ -1.87
USH2A-201ENST00000307340 IGHG3P01860 377 aa3.34□□□□□ -1.87
USH2A-201ENST00000307340 SAMD5Q5TGI4 173 aa3.34□□□□□ -1.87
USH2A-201ENST00000307340 ZNF493Q6ZR52 646 aa3.34□□□□□ -1.87
USH2A-201ENST00000307340 TMEM167AQ8TBQ9 72 aa3.34□□□□□ -1.87
USH2A-201ENST00000307340 SIGMAR1Q99720 223 aa3.34□□□□□ -1.87
USH2A-201ENST00000307340 CRPP02741 224 aa3.34□□□□□ -1.87
USH2A-201ENST00000307340 PMP22Q01453 160 aa3.34□□□□□ -1.87
USH2A-201ENST00000307340 CRYGSP22914 178 aa3.34□□□□□ -1.87
USH2A-201ENST00000307340 WFDC12Q8WWY7 111 aa3.34□□□□□ -1.87
USH2A-201ENST00000307340 RPUSD1Q9UJJ7 312 aaKnown RBP3.34□□□□□ -1.87
USH2A-201ENST00000307340 CD55P08174 381 aa3.34□□□□□ -1.87
USH2A-201ENST00000307340 OR11H4Q8NGC9 324 aa3.34□□□□□ -1.87
USH2A-201ENST00000307340 FAM168AQ92567 244 aa3.34□□□□□ -1.87
USH2A-201ENST00000307340 FOXC2Q99958 501 aa3.34□□□□□ -1.87
USH2A-201ENST00000307340 RNF126Q9BV68 326 aa3.34□□□□□ -1.87
USH2A-201ENST00000307340 NPFFO15130 113 aa3.34□□□□□ -1.87
USH2A-201ENST00000307340 STPG1Q5TH74 334 aa3.34□□□□□ -1.87
USH2A-201ENST00000307340 SSMEM1Q8WWF3 244 aa3.34□□□□□ -1.87
USH2A-201ENST00000307340 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP3.34□□□□□ -1.87
USH2A-201ENST00000307340 CD40P25942 277 aa3.34□□□□□ -1.87
USH2A-201ENST00000307340 GLCCI1Q86VQ1 547 aa3.34□□□□□ -1.87
USH2A-201ENST00000307340 ZNF492Q9P255 531 aa3.34□□□□□ -1.87
USH2A-201ENST00000307340 DEFB109BQ30KR1 87 aa3.34□□□□□ -1.87
USH2A-201ENST00000307340 BVES-AS1Q5T3Y7 98 aa3.34□□□□□ -1.87
USH2A-201ENST00000307340 GZMBP10144 247 aa3.34□□□□□ -1.88
USH2A-201ENST00000307340 ZNF138P52744 262 aa3.34□□□□□ -1.88
USH2A-201ENST00000307340 PEAR1Q5VY43 1037 aaPredicted RBP3.34□□□□□ -1.88
USH2A-201ENST00000307340 TRAV13-2A0A0B4J235 113 aa3.34□□□□□ -1.88
USH2A-201ENST00000307340 TRBV6-1A0A0K0K1D8 114 aa3.34□□□□□ -1.88
USH2A-201ENST00000307340 ZIC3O60481 467 aa3.34□□□□□ -1.88
USH2A-201ENST00000307340 VSIG10L2P0DP72 767 aa3.34□□□□□ -1.88
USH2A-201ENST00000307340 CXCL5P42830 114 aa3.34□□□□□ -1.88
USH2A-201ENST00000307340 TMEM52Q8NDY8 209 aa3.34□□□□□ -1.88
USH2A-201ENST00000307340 SMIM27A0A1W2PRY6 76 aa3.34□□□□□ -1.88
USH2A-201ENST00000307340 PROB1E7EW31 1015 aa3.34□□□□□ -1.88
USH2A-201ENST00000307340 GAGE13Q4V321 117 aa3.34□□□□□ -1.88
USH2A-201ENST00000307340 LINC01551Q86U37 167 aa3.34□□□□□ -1.88
USH2A-201ENST00000307340 IMUPQ9GZP8 106 aa3.34□□□□□ -1.88
USH2A-201ENST00000307340 A0A1W2PR77 199 aa3.34□□□□□ -1.88
USH2A-201ENST00000307340 MED14OSP0DP75 135 aa3.34□□□□□ -1.88
USH2A-201ENST00000307340 ZNF841Q6ZN19 808 aa3.34□□□□□ -1.88
USH2A-201ENST00000307340 PRNTQ86SH4 94 aa3.34□□□□□ -1.88
USH2A-201ENST00000307340 FBXO17Q96EF6 278 aa3.34□□□□□ -1.88
USH2A-201ENST00000307340 PRSS22Q9GZN4 317 aa3.34□□□□□ -1.88
USH2A-201ENST00000307340 ZNF815PA8K554 130 aa3.34□□□□□ -1.88
USH2A-201ENST00000307340 IGKCP01834 107 aa3.34□□□□□ -1.88
USH2A-201ENST00000307340 VWC2Q2TAL6 325 aa3.34□□□□□ -1.88
USH2A-201ENST00000307340 PHLDA1Q8WV24 401 aaPredicted RBP3.34□□□□□ -1.88
USH2A-201ENST00000307340 PRADC1Q9BSG0 188 aa3.34□□□□□ -1.88
USH2A-201ENST00000307340 KLF17Q5JT82 389 aaPredicted RBP3.33□□□□□ -1.88
USH2A-201ENST00000307340 ZNF525Q8N782 197 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 ZNF502Q8TBZ5 544 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 C11orf52Q96A22 123 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 CD5LO43866 347 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 HLA-DMBP28068 263 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 UTF1Q5T230 341 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 A0A1W2PP11 408 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 NPIPB5A8MRT5 1133 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 MLNRO43193 412 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 RPL32P62910 135 aaKnown RBP3.33□□□□□ -1.88
USH2A-201ENST00000307340 Q9H3A6 140 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 DPH3P1Q9H4G8 78 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 SIGLEC12Q96PQ1 595 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 IFITM1P13164 125 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 C11orf44Q8N8P7 122 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 RRHO14718 337 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 SLURP2P0DP57 97 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 ALKBH6Q3KRA9 238 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 OR13A1Q8NGR1 328 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 COQ2Q96H96 371 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 EPDR1Q9UM22 224 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 PSMB11A5LHX3 300 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 TNFRSF6BO95407 300 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 PLAURQ03405 335 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 PSG3Q16557 428 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 C11orf42Q8N5U0 333 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 RFLNBQ8N5W9 214 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 PKDREJQ9NTG1 2253 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 CR1LQ2VPA4 569 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 TINAGQ9UJW2 476 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 RNF114Q9Y508 228 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 ATP5EP56381 51 aaPredicted RBP3.33□□□□□ -1.88
USH2A-201ENST00000307340 C3orf80F5H4A9 247 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 OXLD1Q5BKU9 147 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 Q6ZS92 163 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 CCL21O00585 134 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 IGHG4P01861 327 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 SCTP09683 121 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 TIMM23O14925 209 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 IGLV3-1P01715 115 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 COL9A2Q14055 689 aaPredicted RBP3.33□□□□□ -1.88
USH2A-201ENST00000307340 ZNF25P17030 456 aaPredicted RBP3.33□□□□□ -1.88
USH2A-201ENST00000307340 CRYBA2P53672 197 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 ZCCHC24Q8N2G6 241 aaKnown RBP3.33□□□□□ -1.88
USH2A-201ENST00000307340 SRSF12Q8WXF0 261 aaKnown RBP3.33□□□□□ -1.88
USH2A-201ENST00000307340 GGTLC3B5MD39 225 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 ODF3Q96PU9 254 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms