RNA–Protein interactions for RNA: ENST00000299333.7

SCN3B-201, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN3B, Length 5,665 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-201ENST00000299333 J3KT08 172 aa12.33□□□□□ -0.44
SCN3B-201ENST00000299333 IGHV2-70P01814 119 aa12.33□□□□□ -0.44
SCN3B-201ENST00000299333 LYZL1Q6UWQ5 148 aa12.33□□□□□ -0.44
SCN3B-201ENST00000299333 Q6ZT83 130 aa12.33□□□□□ -0.44
SCN3B-201ENST00000299333 PAQR4Q8N4S7 273 aaPredicted RBP12.33□□□□□ -0.44
SCN3B-201ENST00000299333 NUP35Q8NFH5 326 aa12.33□□□□□ -0.44
SCN3B-201ENST00000299333 C1QTNF4Q9BXJ3 329 aa12.33□□□□□ -0.44
SCN3B-201ENST00000299333 FGF11Q92914 225 aa12.32□□□□□ -0.44
SCN3B-201ENST00000299333 IGKV2-40A0A087WW87 121 aaPredicted RBP12.32□□□□□ -0.44
SCN3B-201ENST00000299333 IGKV1-9A0A0C4DH69 117 aa12.32□□□□□ -0.44
SCN3B-201ENST00000299333 IGKV2D-40P01614 121 aaPredicted RBP12.32□□□□□ -0.44
SCN3B-201ENST00000299333 ADAMTSL1Q8N6G6 1762 aa12.32□□□□□ -0.44
SCN3B-201ENST00000299333 LINC01559Q495D7 138 aa12.32□□□□□ -0.44
SCN3B-201ENST00000299333 BRK1Q8WUW1 75 aa12.32□□□□□ -0.44
SCN3B-201ENST00000299333 ZNF638Q14966 1978 aaKnown RBP12.32□□□□□ -0.44
SCN3B-201ENST00000299333 CCL3L1P16619 93 aa12.32□□□□□ -0.44
SCN3B-201ENST00000299333 PSG7Q13046 419 aa12.32□□□□□ -0.44
SCN3B-201ENST00000299333 ZC2HC1BQ5TFG8 222 aa12.32□□□□□ -0.44
SCN3B-201ENST00000299333 TRAV1-1A0A0B4J248 108 aa12.31□□□□□ -0.44
SCN3B-201ENST00000299333 SPANXDQ9BXN6 97 aa12.31□□□□□ -0.44
SCN3B-201ENST00000299333 TRAV41A0A0B4J266 112 aa12.31□□□□□ -0.44
SCN3B-201ENST00000299333 B9A039 149 aa12.31□□□□□ -0.44
SCN3B-201ENST00000299333 ADCYAP1P18509 176 aa12.31□□□□□ -0.44
SCN3B-201ENST00000299333 ATP1A1-AS1Q5TC04 95 aa12.31□□□□□ -0.44
SCN3B-201ENST00000299333 NABP1Q96AH0 204 aa12.31□□□□□ -0.44
SCN3B-201ENST00000299333 PLEKHB2Q96CS7 222 aa12.31□□□□□ -0.44
SCN3B-201ENST00000299333 CDKN1AP38936 164 aa12.31□□□□□ -0.44
SCN3B-201ENST00000299333 AGMATQ9BSE5 352 aa12.31□□□□□ -0.44
SCN3B-201ENST00000299333 ATP5J2P56134 94 aa12.31□□□□□ -0.44
SCN3B-201ENST00000299333 MORN2Q502X0 79 aa12.31□□□□□ -0.44
SCN3B-201ENST00000299333 RPP25LQ8N5L8 163 aaKnown RBP12.31□□□□□ -0.44
SCN3B-201ENST00000299333 LYZL4Q96KX0 146 aa12.31□□□□□ -0.44
SCN3B-201ENST00000299333 IMMP1LQ96LU5 166 aa12.31□□□□□ -0.44
SCN3B-201ENST00000299333 CSTL1Q9H114 145 aa12.31□□□□□ -0.44
SCN3B-201ENST00000299333 ATG2BQ96BY7 2078 aa12.31□□□□□ -0.44
SCN3B-201ENST00000299333 PRCDQ00LT1 54 aa12.31□□□□□ -0.44
SCN3B-201ENST00000299333 EXOC3-AS1Q8N2X6 119 aa12.31□□□□□ -0.44
SCN3B-201ENST00000299333 SLC25A45Q8N413 288 aa12.31□□□□□ -0.44
SCN3B-201ENST00000299333 C8orf46Q8TAG6 207 aa12.31□□□□□ -0.44
SCN3B-201ENST00000299333 TMEM167AQ8TBQ9 72 aa12.31□□□□□ -0.44
SCN3B-201ENST00000299333 TRAV13-1A0A0B4J241 112 aa12.3□□□□□ -0.44
SCN3B-201ENST00000299333 SMAD7O15105 426 aaKnown RBP12.3□□□□□ -0.44
SCN3B-201ENST00000299333 YPEL1O60688 119 aa12.3□□□□□ -0.44
SCN3B-201ENST00000299333 ZNF497Q6ZNH5 498 aa12.3□□□□□ -0.44
SCN3B-201ENST00000299333 FAM57AQ8TBR7 257 aa12.3□□□□□ -0.44
SCN3B-201ENST00000299333 YPEL2Q96QA6 119 aa12.3□□□□□ -0.44
SCN3B-201ENST00000299333 LINC00312Q9Y6C7 94 aa12.3□□□□□ -0.44
SCN3B-201ENST00000299333 F8W1H4 67 aa12.3□□□□□ -0.44
SCN3B-201ENST00000299333 LINC00114Q6XXX2 140 aa12.3□□□□□ -0.44
SCN3B-201ENST00000299333 MRPL27Q9P0M9 148 aaKnown RBP12.3□□□□□ -0.44
SCN3B-201ENST00000299333 NBR2O15453 112 aa12.3□□□□□ -0.44
SCN3B-201ENST00000299333 LINC01560Q8TB33 94 aa12.3□□□□□ -0.44
SCN3B-201ENST00000299333 CHCHD5Q9BSY4 110 aa12.3□□□□□ -0.44
SCN3B-201ENST00000299333 C9orf118A6NHY6 69 aa12.29□□□□□ -0.44
SCN3B-201ENST00000299333 CD24P25063 80 aa12.29□□□□□ -0.44
SCN3B-201ENST00000299333 RBMY1FQ15415 496 aaKnown RBP12.29□□□□□ -0.44
SCN3B-201ENST00000299333 STPG4Q8N801 248 aa12.29□□□□□ -0.44
SCN3B-201ENST00000299333 K7EP34 96 aa12.29□□□□□ -0.44
SCN3B-201ENST00000299333 LINC00271P0C7V0 271 aa12.29□□□□□ -0.44
SCN3B-201ENST00000299333 SELLP14151 372 aa12.29□□□□□ -0.44
SCN3B-201ENST00000299333 TMEM158Q8WZ71 300 aa12.29□□□□□ -0.44
SCN3B-201ENST00000299333 FBLN5Q9UBX5 448 aa12.29□□□□□ -0.44
SCN3B-201ENST00000299333 COL5A3P25940 1745 aaPredicted RBP12.29□□□□□ -0.44
SCN3B-201ENST00000299333 CEACAM8P31997 349 aaPredicted RBP12.29□□□□□ -0.44
SCN3B-201ENST00000299333 TCTEX1D4Q5JR98 221 aa12.29□□□□□ -0.44
SCN3B-201ENST00000299333 HEATR5BQ9P2D3 2071 aa12.29□□□□□ -0.44
SCN3B-201ENST00000299333 CELA3BP08861 270 aa12.29□□□□□ -0.44
SCN3B-201ENST00000299333 HERV-K104P63124 156 aa12.29□□□□□ -0.44
SCN3B-201ENST00000299333 SUPT4H1P63272 117 aaKnown RBP12.29□□□□□ -0.44
SCN3B-201ENST00000299333 V9GYY9 64 aa12.29□□□□□ -0.44
SCN3B-201ENST00000299333 ZNF474Q6S9Z5 364 aaPredicted RBP12.28□□□□□ -0.44
SCN3B-201ENST00000299333 HAPLN4Q86UW8 402 aa12.28□□□□□ -0.44
SCN3B-201ENST00000299333 CHCHD2Q9Y6H1 151 aaPredicted RBP12.28□□□□□ -0.44
SCN3B-201ENST00000299333 PMS2P5A8MQ11 134 aa12.28□□□□□ -0.44
SCN3B-201ENST00000299333 ZNF688P0C7X2 276 aa12.28□□□□□ -0.44
SCN3B-201ENST00000299333 FDCSPQ8NFU4 85 aa12.28□□□□□ -0.44
SCN3B-201ENST00000299333 IGHV3-73A0A0B4J1V6 119 aa12.28□□□□□ -0.44
SCN3B-201ENST00000299333 APOBEC3AP31941 199 aaPredicted RBP12.28□□□□□ -0.44
SCN3B-201ENST00000299333 CACNA1DQ01668 2161 aa12.28□□□□□ -0.44
SCN3B-201ENST00000299333 TRGV4A0A0C4DH28 118 aa12.28□□□□□ -0.44
SCN3B-201ENST00000299333 DUTP33316 252 aaKnown RBP12.28□□□□□ -0.44
SCN3B-201ENST00000299333 C5orf67F2Z3F1 127 aa12.28□□□□□ -0.44
SCN3B-201ENST00000299333 SRD5A1P18405 259 aa12.28□□□□□ -0.44
SCN3B-201ENST00000299333 FAM27E3Q08E93 113 aa12.28□□□□□ -0.44
SCN3B-201ENST00000299333 WBP1Q96G27 269 aa12.28□□□□□ -0.44
SCN3B-201ENST00000299333 ZNF318Q5VUA4 2279 aa12.28□□□□□ -0.44
SCN3B-201ENST00000299333 KIAA1217Q5T5P2 1943 aa12.28□□□□□ -0.44
SCN3B-201ENST00000299333 IGHV2OR16-5A0A0B4J2B6 119 aa12.27□□□□□ -0.44
SCN3B-201ENST00000299333 LINC01549A6NIU2 74 aa12.27□□□□□ -0.44
SCN3B-201ENST00000299333 SMKR1H3BMG3 65 aa12.27□□□□□ -0.44
SCN3B-201ENST00000299333 ZNF876PQ49A33 203 aa12.27□□□□□ -0.44
SCN3B-201ENST00000299333 DNAJC30Q96LL9 226 aa12.27□□□□□ -0.44
SCN3B-201ENST00000299333 TIAF1O95411 115 aa12.27□□□□□ -0.44
SCN3B-201ENST00000299333 SYNJ2BPP57105 145 aa12.27□□□□□ -0.44
SCN3B-201ENST00000299333 SUMO4Q6EEV6 95 aa12.27□□□□□ -0.44
SCN3B-201ENST00000299333 STHQ8IWL8 128 aa12.27□□□□□ -0.44
SCN3B-201ENST00000299333 A0A1B0GUS0 222 aa12.27□□□□□ -0.45
SCN3B-201ENST00000299333 COX6B1P14854 86 aa12.27□□□□□ -0.45
SCN3B-201ENST00000299333 MST1P26927 711 aa12.27□□□□□ -0.45
SCN3B-201ENST00000299333 PTPRZ1P23471 2315 aaPredicted RBP12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms