RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 CSNK1G2-AS1Q8NCQ2 148 aa9.22□□□□□ -0.93
CD44-203ENST00000278386 OR51G1Q8NGK1 321 aa9.22□□□□□ -0.93
CD44-203ENST00000278386 DTD1Q8TEA8 209 aa9.22□□□□□ -0.93
CD44-203ENST00000278386 IL22RA2Q969J5 263 aa9.22□□□□□ -0.93
CD44-203ENST00000278386 RNF125Q96EQ8 232 aa9.22□□□□□ -0.93
CD44-203ENST00000278386 MCUBQ9NWR8 336 aa9.22□□□□□ -0.93
CD44-203ENST00000278386 SCP2D1Q9UJQ7 156 aa9.22□□□□□ -0.93
CD44-203ENST00000278386 TMEM56-RWDD3S4R434 201 aa9.22□□□□□ -0.93
CD44-203ENST00000278386 DEFB131BA0A096LNP1 70 aa9.21□□□□□ -0.94
CD44-203ENST00000278386 ZFP92A6NM28 416 aa9.21□□□□□ -0.94
CD44-203ENST00000278386 CTDSPLO15194 276 aa9.21□□□□□ -0.94
CD44-203ENST00000278386 BUB3O43684 328 aa9.21□□□□□ -0.94
CD44-203ENST00000278386 AKR1C4P17516 323 aa9.21□□□□□ -0.94
CD44-203ENST00000278386 CCR6P51684 374 aa9.21□□□□□ -0.94
CD44-203ENST00000278386 SMCO1Q147U7 214 aa9.21□□□□□ -0.94
CD44-203ENST00000278386 LGI3Q8N145 548 aa9.21□□□□□ -0.94
CD44-203ENST00000278386 SLC35E1Q96K37 410 aa9.21□□□□□ -0.94
CD44-203ENST00000278386 SCGB3A2Q96PL1 93 aa9.21□□□□□ -0.94
CD44-203ENST00000278386 RBKSQ9H477 322 aa9.21□□□□□ -0.94
CD44-203ENST00000278386 RABL2AQ9UBK7 228 aaPredicted RBP9.21□□□□□ -0.94
CD44-203ENST00000278386 RABL2BQ9UNT1 228 aa9.21□□□□□ -0.94
CD44-203ENST00000278386 U3KQ87 197 aa9.21□□□□□ -0.94
CD44-203ENST00000278386 ANKRD20A5PA0PJZ0 165 aa9.2□□□□□ -0.94
CD44-203ENST00000278386 H3BMM0 161 aa9.2□□□□□ -0.94
CD44-203ENST00000278386 IGKV3-20P01619 116 aa9.2□□□□□ -0.94
CD44-203ENST00000278386 AMBPP02760 352 aa9.2□□□□□ -0.94
CD44-203ENST00000278386 ANXA3P12429 323 aa9.2□□□□□ -0.94
CD44-203ENST00000278386 HLA-DRB4P13762 266 aa9.2□□□□□ -0.94
CD44-203ENST00000278386 LYZP61626 148 aa9.2□□□□□ -0.94
CD44-203ENST00000278386 OR1S1Q8NH92 325 aa9.2□□□□□ -0.94
CD44-203ENST00000278386 DYNC2LI1Q8TCX1 351 aa9.2□□□□□ -0.94
CD44-203ENST00000278386 PPP1R14BQ96C90 147 aa9.2□□□□□ -0.94
CD44-203ENST00000278386 LINC00052Q96N35 136 aa9.2□□□□□ -0.94
CD44-203ENST00000278386 RNF126Q9BV68 326 aa9.2□□□□□ -0.94
CD44-203ENST00000278386 SEPSECSQ9HD40 501 aaKnown RBP9.2□□□□□ -0.94
CD44-203ENST00000278386 CCDC59Q9P031 241 aaKnown RBP9.2□□□□□ -0.94
CD44-203ENST00000278386 HSPB7Q9UBY9 170 aa9.2□□□□□ -0.94
CD44-203ENST00000278386 PFDN2Q9UHV9 154 aa9.2□□□□□ -0.94
CD44-203ENST00000278386 HLA-DRB4X5D2U9 266 aa9.2□□□□□ -0.94
CD44-203ENST00000278386 IGHV3OR16-12A0A075B7B8 117 aa9.19□□□□□ -0.94
CD44-203ENST00000278386 A0A0B4J2A0 478 aa9.19□□□□□ -0.94
CD44-203ENST00000278386 NKX2-1P43699 371 aaPredicted RBP9.19□□□□□ -0.94
CD44-203ENST00000278386 FXYD7P58549 80 aa9.19□□□□□ -0.94
CD44-203ENST00000278386 SRPXP78539 464 aa9.19□□□□□ -0.94
CD44-203ENST00000278386 KLF9Q13886 244 aaPredicted RBP9.19□□□□□ -0.94
CD44-203ENST00000278386 C12orf74Q32Q52 190 aa9.19□□□□□ -0.94
CD44-203ENST00000278386 OR8G2PQ6IF36 304 aa9.19□□□□□ -0.94
CD44-203ENST00000278386 LYZL2Q7Z4W2 148 aa9.19□□□□□ -0.94
CD44-203ENST00000278386 COQ8AQ8NI60 647 aa9.19□□□□□ -0.94
CD44-203ENST00000278386 SHPKQ9UHJ6 478 aa9.19□□□□□ -0.94
CD44-203ENST00000278386 PAIP2BQ9ULR5 123 aaKnown RBP9.19□□□□□ -0.94
CD44-203ENST00000278386 H3BMQ9 156 aa9.18□□□□□ -0.94
CD44-203ENST00000278386 NOL3O60936 208 aaKnown RBP9.18□□□□□ -0.94
CD44-203ENST00000278386 FABP1P07148 127 aa9.18□□□□□ -0.94
CD44-203ENST00000278386 ID1P41134 155 aa9.18□□□□□ -0.94
CD44-203ENST00000278386 EMP1P54849 157 aa9.18□□□□□ -0.94
CD44-203ENST00000278386 TMBIM6P55061 237 aa9.18□□□□□ -0.94
CD44-203ENST00000278386 DEFB1P60022 68 aa9.18□□□□□ -0.94
CD44-203ENST00000278386 ZNF90Q03938 601 aa9.18□□□□□ -0.94
CD44-203ENST00000278386 GDF5OSQ5U4N7 250 aa9.18□□□□□ -0.94
CD44-203ENST00000278386 RAB2BQ8WUD1 216 aa9.18□□□□□ -0.94
CD44-203ENST00000278386 NDUFAF3Q9BU61 184 aa9.18□□□□□ -0.94
CD44-203ENST00000278386 RSL24D1Q9UHA3 163 aaKnown RBP9.18□□□□□ -0.94
CD44-203ENST00000278386 P0DMU3 169 aa9.17□□□□□ -0.94
CD44-203ENST00000278386 FAM231AP0DMU4 169 aa9.17□□□□□ -0.94
CD44-203ENST00000278386 FAM231CP0DMU5 169 aa9.17□□□□□ -0.94
CD44-203ENST00000278386 IAPPP10997 89 aa9.17□□□□□ -0.94
CD44-203ENST00000278386 PSMB3P49720 205 aa9.17□□□□□ -0.94
CD44-203ENST00000278386 RAB11AP62491 216 aa9.17□□□□□ -0.94
CD44-203ENST00000278386 SUPT4H1P63272 117 aaKnown RBP9.17□□□□□ -0.94
CD44-203ENST00000278386 OR2F1Q13607 317 aa9.17□□□□□ -0.94
CD44-203ENST00000278386 FOXI2Q6ZQN5 318 aa9.17□□□□□ -0.94
CD44-203ENST00000278386 TMED4Q7Z7H5 227 aa9.17□□□□□ -0.94
CD44-203ENST00000278386 OR4B1Q8NGF8 309 aa9.17□□□□□ -0.94
CD44-203ENST00000278386 KRTAP17-1Q9BYP8 105 aa9.17□□□□□ -0.94
CD44-203ENST00000278386 WDR12Q9GZL7 423 aaKnown RBP9.17□□□□□ -0.94
CD44-203ENST00000278386 SAV1Q9H4B6 383 aaPredicted RBP9.17□□□□□ -0.94
CD44-203ENST00000278386 IGKV1D-37A0A075B6S9 117 aa9.16□□□□□ -0.94
CD44-203ENST00000278386 PIGBOS1A0A0B4J2F0 54 aa9.16□□□□□ -0.94
CD44-203ENST00000278386 TMEM189A5PLL7 270 aa9.16□□□□□ -0.94
CD44-203ENST00000278386 FAUP35544 74 aaKnown RBP9.16□□□□□ -0.94
CD44-203ENST00000278386 GPX4P36969 197 aaPredicted RBP9.16□□□□□ -0.94
CD44-203ENST00000278386 GAMTQ14353 236 aa9.16□□□□□ -0.94
CD44-203ENST00000278386 ZNF705AQ6ZN79 300 aaPredicted RBP9.16□□□□□ -0.94
CD44-203ENST00000278386 NEU1Q99519 415 aa9.16□□□□□ -0.94
CD44-203ENST00000278386 BCL7BQ9BQE9 202 aa9.16□□□□□ -0.94
CD44-203ENST00000278386 SCRT1Q9BWW7 348 aa9.16□□□□□ -0.94
CD44-203ENST00000278386 SLIRPQ9GZT3 109 aaKnown RBP9.16□□□□□ -0.94
CD44-203ENST00000278386 FAT2Q9NYQ8 4349 aa9.15□□□□□ -0.94
CD44-203ENST00000278386 FABP12A6NFH5 140 aa9.15□□□□□ -0.94
CD44-203ENST00000278386 SPART-AS1P0CW21 52 aa9.15□□□□□ -0.94
CD44-203ENST00000278386 VAMP1P23763 118 aa9.15□□□□□ -0.94
CD44-203ENST00000278386 ATP5IP56385 69 aaPredicted RBP9.15□□□□□ -0.94
CD44-203ENST00000278386 GSG1LQ6UXU4 331 aa9.15□□□□□ -0.94
CD44-203ENST00000278386 LINC00336Q6ZUF6 198 aa9.15□□□□□ -0.94
CD44-203ENST00000278386 UBE2DNLQ8IWF7 75 aa9.15□□□□□ -0.94
CD44-203ENST00000278386 OR8I2Q8N0Y5 310 aa9.15□□□□□ -0.94
CD44-203ENST00000278386 C7orf50Q9BRJ6 194 aaKnown RBP9.15□□□□□ -0.94
CD44-203ENST00000278386 RFNGQ9Y644 331 aa9.15□□□□□ -0.94
CD44-203ENST00000278386 DNAH2Q9P225 4427 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms