RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 IFI27L1Q96BM0 104 aa9.49□□□□□ -0.89
PTPN4-201ENST00000263708 TRAV41A0A0B4J266 112 aa9.49□□□□□ -0.89
PTPN4-201ENST00000263708 NDPQ00604 133 aa9.49□□□□□ -0.89
PTPN4-201ENST00000263708 VMO1Q7Z5L0 202 aa9.49□□□□□ -0.89
PTPN4-201ENST00000263708 SCRT1Q9BWW7 348 aa9.49□□□□□ -0.89
PTPN4-201ENST00000263708 PSG8Q9UQ74 426 aa9.49□□□□□ -0.89
PTPN4-201ENST00000263708 TAF1LQ8IZX4 1826 aa9.48□□□□□ -0.89
PTPN4-201ENST00000263708 C15orf61A6NNL5 157 aa9.48□□□□□ -0.89
PTPN4-201ENST00000263708 F5H768 121 aa9.48□□□□□ -0.89
PTPN4-201ENST00000263708 PLEKHB2Q96CS7 222 aa9.48□□□□□ -0.89
PTPN4-201ENST00000263708 CITED1Q99966 193 aa9.48□□□□□ -0.89
PTPN4-201ENST00000263708 BRCA1P38398 1863 aaKnown RBP9.48□□□□□ -0.89
PTPN4-201ENST00000263708 RFPL3SP0C7P2 107 aa9.48□□□□□ -0.89
PTPN4-201ENST00000263708 TMEM133Q9H2Q1 129 aa9.48□□□□□ -0.89
PTPN4-201ENST00000263708 PPBPP02775 128 aa9.48□□□□□ -0.89
PTPN4-201ENST00000263708 DMRTC2Q8IXT2 367 aaPredicted RBP9.48□□□□□ -0.89
PTPN4-201ENST00000263708 IGKV1-8A0A0C4DH67 115 aa9.48□□□□□ -0.89
PTPN4-201ENST00000263708 C15orf32Q32M92 178 aa9.48□□□□□ -0.89
PTPN4-201ENST00000263708 SPSB3Q6PJ21 355 aa9.48□□□□□ -0.89
PTPN4-201ENST00000263708 NAA38Q9BRA0 125 aaKnown RBP9.48□□□□□ -0.89
PTPN4-201ENST00000263708 FCN3O75636 299 aa9.48□□□□□ -0.89
PTPN4-201ENST00000263708 ZNF708P17019 499 aa9.48□□□□□ -0.89
PTPN4-201ENST00000263708 C5orf67F2Z3F1 127 aa9.48□□□□□ -0.89
PTPN4-201ENST00000263708 LIMS1P48059 325 aa9.48□□□□□ -0.89
PTPN4-201ENST00000263708 IGHV1-2P23083 117 aa9.48□□□□□ -0.89
PTPN4-201ENST00000263708 TNFRSF14Q92956 283 aa9.48□□□□□ -0.89
PTPN4-201ENST00000263708 FAM166AQ6J272 317 aa9.48□□□□□ -0.89
PTPN4-201ENST00000263708 MRPL52Q86TS9 123 aaKnown RBP9.48□□□□□ -0.89
PTPN4-201ENST00000263708 TCF20Q9UGU0 1960 aaKnown RBP9.47□□□□□ -0.89
PTPN4-201ENST00000263708 IGHMP01871 453 aa9.47□□□□□ -0.89
PTPN4-201ENST00000263708 PRB1P04280 392 aa9.47□□□□□ -0.89
PTPN4-201ENST00000263708 MDS2Q8NDY4 140 aa9.47□□□□□ -0.89
PTPN4-201ENST00000263708 C5orf47Q569G3 176 aa9.47□□□□□ -0.89
PTPN4-201ENST00000263708 TRAV9-1A0A075B6T8 112 aa9.47□□□□□ -0.89
PTPN4-201ENST00000263708 F8VVB4 439 aa9.47□□□□□ -0.89
PTPN4-201ENST00000263708 F8VWA3 439 aa9.47□□□□□ -0.89
PTPN4-201ENST00000263708 GATA4P43694 442 aa9.47□□□□□ -0.89
PTPN4-201ENST00000263708 TIMM23O14925 209 aa9.47□□□□□ -0.89
PTPN4-201ENST00000263708 FAM90A2PQ658T7 463 aa9.47□□□□□ -0.89
PTPN4-201ENST00000263708 PRIMA1Q86XR5 153 aa9.47□□□□□ -0.89
PTPN4-201ENST00000263708 SPXQ9BT56 116 aa9.47□□□□□ -0.89
PTPN4-201ENST00000263708 TRAV9-2A0A087WT02 112 aa9.47□□□□□ -0.89
PTPN4-201ENST00000263708 ZCCHC24Q8N2G6 241 aaKnown RBP9.47□□□□□ -0.89
PTPN4-201ENST00000263708 PRR31Q5SQ13 230 aa9.47□□□□□ -0.89
PTPN4-201ENST00000263708 CHCHD1Q96BP2 118 aaKnown RBP9.47□□□□□ -0.89
PTPN4-201ENST00000263708 CSTL1Q9H114 145 aa9.47□□□□□ -0.89
PTPN4-201ENST00000263708 PLXND1Q9Y4D7 1925 aa9.46□□□□□ -0.89
PTPN4-201ENST00000263708 STRCP1A6NGW2 1772 aa9.46□□□□□ -0.89
PTPN4-201ENST00000263708 IGHG3P01860 377 aa9.46□□□□□ -0.89
PTPN4-201ENST00000263708 HSD52Q0P140 79 aa9.46□□□□□ -0.89
PTPN4-201ENST00000263708 C1orf100Q5SVJ3 147 aa9.46□□□□□ -0.89
PTPN4-201ENST00000263708 LINC00518Q8N0U6 118 aa9.46□□□□□ -0.89
PTPN4-201ENST00000263708 TRBV5-7A0A0A0MS05 114 aa9.46□□□□□ -0.89
PTPN4-201ENST00000263708 A0A0G2JK05 382 aa9.46□□□□□ -0.89
PTPN4-201ENST00000263708 DOCK4Q8N1I0 1966 aa9.46□□□□□ -0.89
PTPN4-201ENST00000263708 PRSS23O95084 383 aa9.46□□□□□ -0.89
PTPN4-201ENST00000263708 PSG1P11464 419 aa9.46□□□□□ -0.89
PTPN4-201ENST00000263708 TIMM21Q9BVV7 248 aa9.46□□□□□ -0.89
PTPN4-201ENST00000263708 RAMP1O60894 148 aa9.46□□□□□ -0.89
PTPN4-201ENST00000263708 RBM38Q9H0Z9 239 aaKnown RBP9.46□□□□□ -0.89
PTPN4-201ENST00000263708 DEPPQ9NTK1 212 aa9.46□□□□□ -0.89
PTPN4-201ENST00000263708 PCNX1Q96RV3 2341 aa9.46□□□□□ -0.9
PTPN4-201ENST00000263708 A0A0G2JMM0 328 aa9.46□□□□□ -0.9
PTPN4-201ENST00000263708 A0A1W2PPB8 328 aa9.46□□□□□ -0.9
PTPN4-201ENST00000263708 A0A1W2PRS3 328 aa9.46□□□□□ -0.9
PTPN4-201ENST00000263708 KIR3DP1A8MWS1 328 aa9.46□□□□□ -0.9
PTPN4-201ENST00000263708 D6R8Y8 96 aa9.46□□□□□ -0.9
PTPN4-201ENST00000263708 PLCE1Q9P212 2302 aa9.46□□□□□ -0.9
PTPN4-201ENST00000263708 MMP23AO75900 390 aa9.46□□□□□ -0.9
PTPN4-201ENST00000263708 TFF1P04155 84 aa9.46□□□□□ -0.9
PTPN4-201ENST00000263708 CD55P08174 381 aa9.46□□□□□ -0.9
PTPN4-201ENST00000263708 MRPS18AQ9NVS2 196 aaKnown RBP9.46□□□□□ -0.9
PTPN4-201ENST00000263708 MYMXA0A1B0GTQ4 84 aa9.46□□□□□ -0.9
PTPN4-201ENST00000263708 CHKB-CPT1BH3BT56 60 aa9.46□□□□□ -0.9
PTPN4-201ENST00000263708 SPRED2Q7Z698 418 aa9.46□□□□□ -0.9
PTPN4-201ENST00000263708 TIAF1O95411 115 aa9.45□□□□□ -0.9
PTPN4-201ENST00000263708 PRCDQ00LT1 54 aa9.45□□□□□ -0.9
PTPN4-201ENST00000263708 C1QTNF4Q9BXJ3 329 aa9.45□□□□□ -0.9
PTPN4-201ENST00000263708 TRAV12-1A0A0B4J245 112 aa9.45□□□□□ -0.9
PTPN4-201ENST00000263708 RNF114Q9Y508 228 aa9.45□□□□□ -0.9
PTPN4-201ENST00000263708 UPK2O00526 184 aa9.45□□□□□ -0.9
PTPN4-201ENST00000263708 A0A087WWL8 130 aa9.45□□□□□ -0.9
PTPN4-201ENST00000263708 RASL11AQ6T310 242 aa9.45□□□□□ -0.9
PTPN4-201ENST00000263708 DSCR8Q96T75 97 aa9.45□□□□□ -0.9
PTPN4-201ENST00000263708 INAFM2P0DMQ5 153 aa9.45□□□□□ -0.9
PTPN4-201ENST00000263708 EXOC3-AS1Q8N2X6 119 aa9.45□□□□□ -0.9
PTPN4-201ENST00000263708 BHLHA9Q7RTU4 235 aa9.45□□□□□ -0.9
PTPN4-201ENST00000263708 OR9G9P0C7N8 305 aa9.45□□□□□ -0.9
PTPN4-201ENST00000263708 C1QL4Q86Z23 238 aa9.45□□□□□ -0.9
PTPN4-201ENST00000263708 DAD1P61803 113 aa9.44□□□□□ -0.9
PTPN4-201ENST00000263708 COL18A1P39060 1754 aa9.44□□□□□ -0.9
PTPN4-201ENST00000263708 C1QCP02747 245 aa9.44□□□□□ -0.9
PTPN4-201ENST00000263708 C9orf153Q5TBE3 101 aa9.44□□□□□ -0.9
PTPN4-201ENST00000263708 PIP4P2Q8N4L2 257 aa9.44□□□□□ -0.9
PTPN4-201ENST00000263708 NPDC1Q9NQX5 325 aaPredicted RBP9.44□□□□□ -0.9
PTPN4-201ENST00000263708 C1QTNF9P0C862 333 aa9.44□□□□□ -0.9
PTPN4-201ENST00000263708 KLRD1Q13241 179 aa9.44□□□□□ -0.9
PTPN4-201ENST00000263708 CEACAM1P13688 526 aa9.44□□□□□ -0.9
PTPN4-201ENST00000263708 DSCR9P59020 149 aa9.44□□□□□ -0.9
PTPN4-201ENST00000263708 PSG7Q13046 419 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 431.9 ms