RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 BRD3OSQ6XYD6 125 aa10.99□□□□□ -0.65
LDLR-201ENST00000252444 CTSZQ9UBR2 303 aa10.99□□□□□ -0.65
LDLR-201ENST00000252444 TMEM50AO95807 157 aa10.98□□□□□ -0.65
LDLR-201ENST00000252444 KRTDAPP60985 99 aa10.98□□□□□ -0.65
LDLR-201ENST00000252444 ZNF98A6NK75 572 aa10.98□□□□□ -0.65
LDLR-201ENST00000252444 TCL1AP56279 114 aa10.98□□□□□ -0.65
LDLR-201ENST00000252444 PMS2P11Q13670 270 aa10.98□□□□□ -0.65
LDLR-201ENST00000252444 C12orf54Q6X4T0 127 aa10.98□□□□□ -0.65
LDLR-201ENST00000252444 DUX3Q96PT4 197 aa10.98□□□□□ -0.65
LDLR-201ENST00000252444 IFITM2Q01629 132 aa10.98□□□□□ -0.65
LDLR-201ENST00000252444 OR10W1Q8NGF6 305 aa10.98□□□□□ -0.65
LDLR-201ENST00000252444 WFDC1Q9HC57 220 aa10.98□□□□□ -0.65
LDLR-201ENST00000252444 PKIAP61925 76 aa10.98□□□□□ -0.65
LDLR-201ENST00000252444 FER1L6-AS1Q8NA97 138 aa10.98□□□□□ -0.65
LDLR-201ENST00000252444 MRPL27Q9P0M9 148 aaKnown RBP10.98□□□□□ -0.65
LDLR-201ENST00000252444 IGHV3-11P01762 117 aa10.97□□□□□ -0.65
LDLR-201ENST00000252444 PMCHL1Q16048 86 aa10.97□□□□□ -0.65
LDLR-201ENST00000252444 C22orf46C9J442 243 aa10.97□□□□□ -0.65
LDLR-201ENST00000252444 ATP6V0E1O15342 81 aa10.97□□□□□ -0.65
LDLR-201ENST00000252444 SMIM6P0DI80 62 aa10.97□□□□□ -0.65
LDLR-201ENST00000252444 RARRES2Q99969 163 aa10.97□□□□□ -0.65
LDLR-201ENST00000252444 TMEM70Q9BUB7 260 aa10.97□□□□□ -0.65
LDLR-201ENST00000252444 IGHV3-23P01764 117 aa10.96□□□□□ -0.65
LDLR-201ENST00000252444 M0R143 59 aa10.96□□□□□ -0.66
LDLR-201ENST00000252444 ZNF138P52744 262 aa10.96□□□□□ -0.66
LDLR-201ENST00000252444 TMEM75Q8N9X5 138 aa10.96□□□□□ -0.66
LDLR-201ENST00000252444 NEU1Q99519 415 aa10.96□□□□□ -0.66
LDLR-201ENST00000252444 GFRA4Q9GZZ7 299 aa10.96□□□□□ -0.66
LDLR-201ENST00000252444 OR10AG1Q8NH19 301 aa10.96□□□□□ -0.66
LDLR-201ENST00000252444 MRPL18Q9H0U6 180 aaKnown RBP10.96□□□□□ -0.66
LDLR-201ENST00000252444 PRSS1P07477 247 aa10.95□□□□□ -0.66
LDLR-201ENST00000252444 CD33P20138 364 aa10.95□□□□□ -0.66
LDLR-201ENST00000252444 AMMECR1LQ6DCA0 310 aa10.95□□□□□ -0.66
LDLR-201ENST00000252444 TMEM219Q86XT9 240 aa10.95□□□□□ -0.66
LDLR-201ENST00000252444 KLHL30-AS1Q8NEE0 82 aa10.95□□□□□ -0.66
LDLR-201ENST00000252444 ZNF48Q96MX3 618 aaPredicted RBP10.95□□□□□ -0.66
LDLR-201ENST00000252444 ATG2AQ2TAZ0 1938 aa10.95□□□□□ -0.66
LDLR-201ENST00000252444 FAM231BA6NCW3 169 aa10.95□□□□□ -0.66
LDLR-201ENST00000252444 IGKV1-16P04430 117 aa10.95□□□□□ -0.66
LDLR-201ENST00000252444 LY6G5BQ8NDX9 201 aa10.95□□□□□ -0.66
LDLR-201ENST00000252444 OR1N2Q8NGR9 330 aa10.95□□□□□ -0.66
LDLR-201ENST00000252444 PMCHL2Q9BQD1 86 aa10.95□□□□□ -0.66
LDLR-201ENST00000252444 TSSC4Q9Y5U2 329 aaPredicted RBP10.95□□□□□ -0.66
LDLR-201ENST00000252444 TRAV3A0A0B4J244 114 aa10.95□□□□□ -0.66
LDLR-201ENST00000252444 SCO2A0A1W2PP80 73 aa10.95□□□□□ -0.66
LDLR-201ENST00000252444 VWC2Q2TAL6 325 aa10.95□□□□□ -0.66
LDLR-201ENST00000252444 ZNF492Q9P255 531 aa10.95□□□□□ -0.66
LDLR-201ENST00000252444 ZNF843Q8N446 348 aa10.95□□□□□ -0.66
LDLR-201ENST00000252444 FGF23Q9GZV9 251 aaPredicted RBP10.95□□□□□ -0.66
LDLR-201ENST00000252444 CENPVL3A0A0U1RRI6 287 aa10.94□□□□□ -0.66
LDLR-201ENST00000252444 SRSF2Q01130 221 aaKnown RBP10.94□□□□□ -0.66
LDLR-201ENST00000252444 ZNF415Q09FC8 603 aa10.94□□□□□ -0.66
LDLR-201ENST00000252444 FOXL1Q12952 345 aa10.94□□□□□ -0.66
LDLR-201ENST00000252444 PGLYRP4Q96LB8 373 aa10.94□□□□□ -0.66
LDLR-201ENST00000252444 CBY3A6NI87 242 aa10.94□□□□□ -0.66
LDLR-201ENST00000252444 ATP5LO75964 103 aa10.94□□□□□ -0.66
LDLR-201ENST00000252444 INSP01308 110 aa10.94□□□□□ -0.66
LDLR-201ENST00000252444 LINC01587Q99440 93 aa10.94□□□□□ -0.66
LDLR-201ENST00000252444 OR11H12B2RN74 326 aa10.94□□□□□ -0.66
LDLR-201ENST00000252444 GRNP28799 593 aaKnown RBP10.94□□□□□ -0.66
LDLR-201ENST00000252444 SSTP61278 116 aa10.94□□□□□ -0.66
LDLR-201ENST00000252444 CT83Q5H943 113 aa10.94□□□□□ -0.66
LDLR-201ENST00000252444 TMEM101Q96IK0 257 aa10.94□□□□□ -0.66
LDLR-201ENST00000252444 SIRPDQ9H106 197 aa10.94□□□□□ -0.66
LDLR-201ENST00000252444 SAP30O75446 220 aa10.94□□□□□ -0.66
LDLR-201ENST00000252444 TSKUQ8WUA8 353 aa10.94□□□□□ -0.66
LDLR-201ENST00000252444 NRN1Q9NPD7 142 aa10.94□□□□□ -0.66
LDLR-201ENST00000252444 SNRPEP62304 92 aaKnown RBP10.93□□□□□ -0.66
LDLR-201ENST00000252444 RUSC1-AS1Q66K80 236 aa10.93□□□□□ -0.66
LDLR-201ENST00000252444 TCRAP04437 139 aa10.93□□□□□ -0.66
LDLR-201ENST00000252444 PSG3Q16557 428 aa10.93□□□□□ -0.66
LDLR-201ENST00000252444 C10orf55Q5SWW7 151 aa10.93□□□□□ -0.66
LDLR-201ENST00000252444 LAMTOR2Q9Y2Q5 125 aa10.93□□□□□ -0.66
LDLR-201ENST00000252444 TNFRSF18Q9Y5U5 241 aa10.93□□□□□ -0.66
LDLR-201ENST00000252444 H0Y8G0 127 aa10.93□□□□□ -0.66
LDLR-201ENST00000252444 H3BRN7 92 aa10.93□□□□□ -0.66
LDLR-201ENST00000252444 DLX1P56177 255 aa10.93□□□□□ -0.66
LDLR-201ENST00000252444 C11orf71Q6IPW1 123 aa10.93□□□□□ -0.66
LDLR-201ENST00000252444 ALKBH7Q9BT30 221 aaPredicted RBP10.93□□□□□ -0.66
LDLR-201ENST00000252444 ZNF581Q9P0T4 197 aa10.93□□□□□ -0.66
LDLR-201ENST00000252444 TMSB15BA0A087X1C1 80 aa10.92□□□□□ -0.66
LDLR-201ENST00000252444 IGHV4-61A0A0C4DH41 118 aa10.92□□□□□ -0.66
LDLR-201ENST00000252444 NDUFA3O95167 84 aa10.92□□□□□ -0.66
LDLR-201ENST00000252444 ATP5G3P48201 142 aa10.92□□□□□ -0.66
LDLR-201ENST00000252444 ZNF56Q15929 161 aa10.92□□□□□ -0.66
LDLR-201ENST00000252444 LHFPL4Q7Z7J7 247 aa10.92□□□□□ -0.66
LDLR-201ENST00000252444 MBD6Q96DN6 1003 aa10.92□□□□□ -0.66
LDLR-201ENST00000252444 AJUBAQ96IF1 538 aa10.92□□□□□ -0.66
LDLR-201ENST00000252444 J3KRW8 73 aa10.92□□□□□ -0.66
LDLR-201ENST00000252444 TNFRSF13BO14836 293 aaPredicted RBP10.92□□□□□ -0.66
LDLR-201ENST00000252444 SPINK4O60575 86 aa10.92□□□□□ -0.66
LDLR-201ENST00000252444 LGALS1P09382 135 aaKnown RBP10.92□□□□□ -0.66
LDLR-201ENST00000252444 FABP4P15090 132 aa10.92□□□□□ -0.66
LDLR-201ENST00000252444 BTF3P20290 206 aaKnown RBP10.92□□□□□ -0.66
LDLR-201ENST00000252444 LENEPQ9Y5L5 61 aa10.92□□□□□ -0.66
LDLR-201ENST00000252444 LY6HO94772 140 aa10.92□□□□□ -0.66
LDLR-201ENST00000252444 C19orf54Q5BKX5 351 aa10.92□□□□□ -0.66
LDLR-201ENST00000252444 RNF152Q8N8N0 203 aa10.92□□□□□ -0.66
LDLR-201ENST00000252444 CD24P25063 80 aa10.92□□□□□ -0.66
LDLR-201ENST00000252444 RPL23P62829 140 aaKnown RBP10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms