RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 LINC00869P0C866 280 aa10.67□□□□□ -0.7
CCDC40-209ENST00000573474 ELLP55199 621 aaPredicted RBP10.67□□□□□ -0.7
CCDC40-209ENST00000573474 B2MP61769 119 aa10.67□□□□□ -0.7
CCDC40-209ENST00000573474 SLC35B1P78383 322 aa10.67□□□□□ -0.7
CCDC40-209ENST00000573474 PRR20EP86478 221 aa10.67□□□□□ -0.7
CCDC40-209ENST00000573474 PRR20CP86479 221 aa10.67□□□□□ -0.7
CCDC40-209ENST00000573474 PRR20DP86480 221 aa10.67□□□□□ -0.7
CCDC40-209ENST00000573474 PRR20BP86481 221 aa10.67□□□□□ -0.7
CCDC40-209ENST00000573474 PRR20AP86496 221 aa10.67□□□□□ -0.7
CCDC40-209ENST00000573474 ACOT6Q3I5F7 207 aaPredicted RBP10.67□□□□□ -0.7
CCDC40-209ENST00000573474 STPG3Q8N7X2 389 aa10.67□□□□□ -0.7
CCDC40-209ENST00000573474 BPIFCQ8NFQ6 507 aa10.67□□□□□ -0.7
CCDC40-209ENST00000573474 PCNPQ8WW12 178 aaKnown RBP10.67□□□□□ -0.7
CCDC40-209ENST00000573474 EEF1AKMT3Q96AZ1 226 aa10.67□□□□□ -0.7
CCDC40-209ENST00000573474 USMG5Q96IX5 58 aa10.67□□□□□ -0.7
CCDC40-209ENST00000573474 SLC39A9Q9NUM3 307 aa10.67□□□□□ -0.7
CCDC40-209ENST00000573474 TRBV7-1A0A0A6YYK4 115 aa10.66□□□□□ -0.7
CCDC40-209ENST00000573474 GNG7O60262 68 aa10.66□□□□□ -0.7
CCDC40-209ENST00000573474 SCGB2A1O75556 95 aa10.66□□□□□ -0.7
CCDC40-209ENST00000573474 YIF1AO95070 293 aa10.66□□□□□ -0.7
CCDC40-209ENST00000573474 FABP1P07148 127 aa10.66□□□□□ -0.7
CCDC40-209ENST00000573474 IGLC1P0CG04 106 aa10.66□□□□□ -0.7
CCDC40-209ENST00000573474 PF4V1P10720 104 aa10.66□□□□□ -0.7
CCDC40-209ENST00000573474 M6PRP20645 277 aa10.66□□□□□ -0.7
CCDC40-209ENST00000573474 TPPP2P59282 170 aa10.66□□□□□ -0.7
CCDC40-209ENST00000573474 DEFA5Q01523 94 aa10.66□□□□□ -0.7
CCDC40-209ENST00000573474 ZNF90Q03938 601 aa10.66□□□□□ -0.7
CCDC40-209ENST00000573474 Q56UQ5 140 aa10.66□□□□□ -0.7
CCDC40-209ENST00000573474 Q6ZSV7 163 aa10.66□□□□□ -0.7
CCDC40-209ENST00000573474 FAM213BQ8TBF2 198 aa10.66□□□□□ -0.7
CCDC40-209ENST00000573474 ZNF502Q8TBZ5 544 aa10.66□□□□□ -0.7
CCDC40-209ENST00000573474 ATP6V0BQ99437 205 aa10.66□□□□□ -0.7
CCDC40-209ENST00000573474 VSIRQ9H7M9 311 aa10.66□□□□□ -0.7
CCDC40-209ENST00000573474 RPRMQ9NS64 109 aa10.66□□□□□ -0.7
CCDC40-209ENST00000573474 GAR1Q9NY12 217 aaKnown RBP10.66□□□□□ -0.7
CCDC40-209ENST00000573474 S4R3C0 116 aa10.66□□□□□ -0.7
CCDC40-209ENST00000573474 A0A0G2JLM5 398 aa10.65□□□□□ -0.7
CCDC40-209ENST00000573474 PSMB11A5LHX3 300 aa10.65□□□□□ -0.7
CCDC40-209ENST00000573474 F8W735 103 aaPredicted RBP10.65□□□□□ -0.7
CCDC40-209ENST00000573474 IGKV1-17P01599 117 aa10.65□□□□□ -0.7
CCDC40-209ENST00000573474 IGHV3-23P01764 117 aa10.65□□□□□ -0.7
CCDC40-209ENST00000573474 FHITP49789 147 aa10.65□□□□□ -0.7
CCDC40-209ENST00000573474 RAB9AP51151 201 aa10.65□□□□□ -0.7
CCDC40-209ENST00000573474 RAB2AP61019 212 aa10.65□□□□□ -0.7
CCDC40-209ENST00000573474 TIGITQ495A1 244 aa10.65□□□□□ -0.7
CCDC40-209ENST00000573474 TEX38Q6PEX7 206 aa10.65□□□□□ -0.7
CCDC40-209ENST00000573474 Q6ZRG5 221 aa10.65□□□□□ -0.7
CCDC40-209ENST00000573474 ZNF329Q86UD4 541 aa10.65□□□□□ -0.7
CCDC40-209ENST00000573474 OR10G4Q8NGN3 311 aa10.65□□□□□ -0.7
CCDC40-209ENST00000573474 OR10G9Q8NGN4 311 aa10.65□□□□□ -0.7
CCDC40-209ENST00000573474 OR10G7Q8NGN6 311 aa10.65□□□□□ -0.7
CCDC40-209ENST00000573474 SERTAD4Q9NUC0 356 aa10.65□□□□□ -0.7
CCDC40-209ENST00000573474 MTORP42345 2549 aa10.65□□□□□ -0.7
CCDC40-209ENST00000573474 TCF21O43680 179 aa10.64□□□□□ -0.71
CCDC40-209ENST00000573474 ELANEP08246 267 aa10.64□□□□□ -0.71
CCDC40-209ENST00000573474 GATA2P23769 480 aaPredicted RBP10.64□□□□□ -0.71
CCDC40-209ENST00000573474 PSMB8P28062 276 aa10.64□□□□□ -0.71
CCDC40-209ENST00000573474 YPEL3P61236 119 aaPredicted RBP10.64□□□□□ -0.71
CCDC40-209ENST00000573474 ZNF616Q08AN1 781 aa10.64□□□□□ -0.71
CCDC40-209ENST00000573474 FOXE3Q13461 319 aa10.64□□□□□ -0.71
CCDC40-209ENST00000573474 NDUFA5Q16718 116 aa10.64□□□□□ -0.71
CCDC40-209ENST00000573474 PXDC1Q5TGL8 231 aa10.64□□□□□ -0.71
CCDC40-209ENST00000573474 ACTR3CQ9C0K3 210 aaPredicted RBP10.64□□□□□ -0.71
CCDC40-209ENST00000573474 KLK15Q9H2R5 256 aa10.64□□□□□ -0.71
CCDC40-209ENST00000573474 C16orf95Q9H693 158 aa10.64□□□□□ -0.71
CCDC40-209ENST00000573474 LINC00862A6NCI5 91 aa10.63□□□□□ -0.71
CCDC40-209ENST00000573474 OR2T8A6NH00 312 aa10.63□□□□□ -0.71
CCDC40-209ENST00000573474 CLEC3BP05452 202 aa10.63□□□□□ -0.71
CCDC40-209ENST00000573474 H2AFB1P0C5Y9 115 aa10.63□□□□□ -0.71
CCDC40-209ENST00000573474 RD3LP0DJH9 198 aa10.63□□□□□ -0.71
CCDC40-209ENST00000573474 RPP25LQ8N5L8 163 aaKnown RBP10.63□□□□□ -0.71
CCDC40-209ENST00000573474 COMMD1Q8N668 190 aa10.63□□□□□ -0.71
CCDC40-209ENST00000573474 C19orf24Q9BVV8 132 aa10.63□□□□□ -0.71
CCDC40-209ENST00000573474 A0A1W2PPV4 95 aa10.62□□□□□ -0.71
CCDC40-209ENST00000573474 SEC14L6B5MCN3 397 aa10.62□□□□□ -0.71
CCDC40-209ENST00000573474 NUPL2O15504 423 aaKnown RBP10.62□□□□□ -0.71
CCDC40-209ENST00000573474 NDUFA7O95182 113 aa10.62□□□□□ -0.71
CCDC40-209ENST00000573474 TOMM40O96008 361 aa10.62□□□□□ -0.71
CCDC40-209ENST00000573474 CTSGP08311 255 aa10.62□□□□□ -0.71
CCDC40-209ENST00000573474 PSG1P11464 419 aa10.62□□□□□ -0.71
CCDC40-209ENST00000573474 GCSAMLQ5JQS6 135 aa10.62□□□□□ -0.71
CCDC40-209ENST00000573474 FAM122CQ6P4D5 195 aa10.62□□□□□ -0.71
CCDC40-209ENST00000573474 CLEC19AQ6UXS0 136 aa10.62□□□□□ -0.71
CCDC40-209ENST00000573474 RNF152Q8N8N0 203 aa10.62□□□□□ -0.71
CCDC40-209ENST00000573474 OR1L4Q8NGR5 311 aa10.62□□□□□ -0.71
CCDC40-209ENST00000573474 MBD3L1Q8WWY6 194 aa10.62□□□□□ -0.71
CCDC40-209ENST00000573474 RCC1LQ96I51 464 aaKnown RBP10.62□□□□□ -0.71
CCDC40-209ENST00000573474 CCDC140Q96MF4 163 aa10.62□□□□□ -0.71
CCDC40-209ENST00000573474 DNAJC4Q9NNZ3 241 aa10.62□□□□□ -0.71
CCDC40-209ENST00000573474 ELOA3CA0A087WX78 387 aaPredicted RBP10.61□□□□□ -0.71
CCDC40-209ENST00000573474 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.61□□□□□ -0.71
CCDC40-209ENST00000573474 CTXND1A0A1B0GTU2 59 aa10.61□□□□□ -0.71
CCDC40-209ENST00000573474 TEX46H3BTG2 121 aa10.61□□□□□ -0.71
CCDC40-209ENST00000573474 COX7A2P2O60397 106 aa10.61□□□□□ -0.71
CCDC40-209ENST00000573474 HBE1P02100 147 aa10.61□□□□□ -0.71
CCDC40-209ENST00000573474 GPR183P32249 361 aa10.61□□□□□ -0.71
CCDC40-209ENST00000573474 CDC34P49427 236 aaPredicted RBP10.61□□□□□ -0.71
CCDC40-209ENST00000573474 PLP1P60201 277 aa10.61□□□□□ -0.71
CCDC40-209ENST00000573474 RHOBP62745 196 aa10.61□□□□□ -0.71
CCDC40-209ENST00000573474 ZNF726P1Q15940 193 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms