RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 DEFB131AP59861 70 aa7.94□□□□□ -1.14
VPS39-208ENST00000564994 RPL11P62913 178 aaKnown RBP7.94□□□□□ -1.14
VPS39-208ENST00000564994 RBMS2Q15434 407 aaKnown RBP7.94□□□□□ -1.14
VPS39-208ENST00000564994 NMSQ5H8A3 153 aa7.94□□□□□ -1.14
VPS39-208ENST00000564994 LYZL2Q7Z4W2 148 aa7.94□□□□□ -1.14
VPS39-208ENST00000564994 RNASEH2CQ8TDP1 164 aaKnown RBP7.94□□□□□ -1.14
VPS39-208ENST00000564994 TRIM63Q969Q1 353 aa7.94□□□□□ -1.14
VPS39-208ENST00000564994 METTL26Q96S19 204 aa7.94□□□□□ -1.14
VPS39-208ENST00000564994 MCUBQ9NWR8 336 aa7.94□□□□□ -1.14
VPS39-208ENST00000564994 SCP2D1Q9UJQ7 156 aa7.94□□□□□ -1.14
VPS39-208ENST00000564994 KCNIP3Q9Y2W7 256 aa7.94□□□□□ -1.14
VPS39-208ENST00000564994 TRAV30A0A087WSZ9 112 aa7.93□□□□□ -1.14
VPS39-208ENST00000564994 RPS10-NUDT3A0A1W2PQS6 291 aa7.93□□□□□ -1.14
VPS39-208ENST00000564994 A0A1W2PS18 150 aa7.93□□□□□ -1.14
VPS39-208ENST00000564994 K7EQG2 157 aa7.93□□□□□ -1.14
VPS39-208ENST00000564994 DNASE2O00115 360 aaPredicted RBP7.93□□□□□ -1.14
VPS39-208ENST00000564994 ATF4P18848 351 aaPredicted RBP7.93□□□□□ -1.14
VPS39-208ENST00000564994 NPY1RP25929 384 aa7.93□□□□□ -1.14
VPS39-208ENST00000564994 P2RY1P47900 373 aa7.93□□□□□ -1.14
VPS39-208ENST00000564994 KLF9Q13886 244 aaPredicted RBP7.93□□□□□ -1.14
VPS39-208ENST00000564994 OR1S2Q8NGQ3 325 aa7.93□□□□□ -1.14
VPS39-208ENST00000564994 SCGB3A2Q96PL1 93 aa7.93□□□□□ -1.14
VPS39-208ENST00000564994 TMEM231Q9H6L2 316 aa7.93□□□□□ -1.14
VPS39-208ENST00000564994 HSPB7Q9UBY9 170 aa7.93□□□□□ -1.14
VPS39-208ENST00000564994 RABAC1Q9UI14 185 aa7.93□□□□□ -1.14
VPS39-208ENST00000564994 U3KQE9 123 aa7.93□□□□□ -1.14
VPS39-208ENST00000564994 V9GYH0 126 aa7.93□□□□□ -1.14
VPS39-208ENST00000564994 DNAH10Q8IVF4 4471 aa7.93□□□□□ -1.14
VPS39-208ENST00000564994 FRAS1Q86XX4 4008 aa7.92□□□□□ -1.14
VPS39-208ENST00000564994 A0A0B4J2A0 478 aa7.92□□□□□ -1.14
VPS39-208ENST00000564994 SLC25A4P12235 298 aa7.92□□□□□ -1.14
VPS39-208ENST00000564994 OR10J1P30954 320 aa7.92□□□□□ -1.14
VPS39-208ENST00000564994 CCR6P51684 374 aa7.92□□□□□ -1.14
VPS39-208ENST00000564994 YPEL3P61236 119 aaPredicted RBP7.92□□□□□ -1.14
VPS39-208ENST00000564994 SMCO1Q147U7 214 aa7.92□□□□□ -1.14
VPS39-208ENST00000564994 USF2Q15853 346 aaPredicted RBP7.92□□□□□ -1.14
VPS39-208ENST00000564994 ZNF79Q15937 498 aa7.92□□□□□ -1.14
VPS39-208ENST00000564994 STXBP6Q8NFX7 210 aa7.92□□□□□ -1.14
VPS39-208ENST00000564994 DCANP1Q8TF63 244 aa7.92□□□□□ -1.14
VPS39-208ENST00000564994 Q8WTZ3 238 aa7.92□□□□□ -1.14
VPS39-208ENST00000564994 LINC00476Q8WZB0 136 aa7.92□□□□□ -1.14
VPS39-208ENST00000564994 NPIPB3Q92617 1050 aa7.92□□□□□ -1.14
VPS39-208ENST00000564994 RBKSQ9H477 322 aa7.92□□□□□ -1.14
VPS39-208ENST00000564994 SHPKQ9UHJ6 478 aa7.92□□□□□ -1.14
VPS39-208ENST00000564994 NUPR2A6NF83 97 aa7.91□□□□□ -1.14
VPS39-208ENST00000564994 SCGB2A1O75556 95 aa7.91□□□□□ -1.14
VPS39-208ENST00000564994 CA1P00915 261 aaPredicted RBP7.91□□□□□ -1.14
VPS39-208ENST00000564994 GIG44P09565 113 aaPredicted RBP7.91□□□□□ -1.14
VPS39-208ENST00000564994 ZNF688P0C7X2 276 aa7.91□□□□□ -1.14
VPS39-208ENST00000564994 PYDC2Q56P42 97 aa7.91□□□□□ -1.14
VPS39-208ENST00000564994 CEMP1Q6PRD7 247 aaPredicted RBP7.91□□□□□ -1.14
VPS39-208ENST00000564994 C16orf54Q6UWD8 224 aa7.91□□□□□ -1.14
VPS39-208ENST00000564994 LGI3Q8N145 548 aa7.91□□□□□ -1.14
VPS39-208ENST00000564994 OR11H2Q8NH07 326 aa7.91□□□□□ -1.14
VPS39-208ENST00000564994 DTD1Q8TEA8 209 aa7.91□□□□□ -1.14
VPS39-208ENST00000564994 GATAD1Q8WUU5 269 aa7.91□□□□□ -1.14
VPS39-208ENST00000564994 GLMPQ8WWB7 406 aa7.91□□□□□ -1.14
VPS39-208ENST00000564994 ACY3Q96HD9 319 aa7.91□□□□□ -1.14
VPS39-208ENST00000564994 RARRES2Q99969 163 aa7.91□□□□□ -1.14
VPS39-208ENST00000564994 RBM38Q9H0Z9 239 aaKnown RBP7.91□□□□□ -1.14
VPS39-208ENST00000564994 PITX3O75364 302 aa7.9□□□□□ -1.14
VPS39-208ENST00000564994 TOMM40O96008 361 aa7.9□□□□□ -1.14
VPS39-208ENST00000564994 IFNA10P01566 189 aa7.9□□□□□ -1.14
VPS39-208ENST00000564994 IL4P05112 153 aa7.9□□□□□ -1.14
VPS39-208ENST00000564994 HNRNPCP07910 306 aaKnown RBP eCLIP7.9□□□□□ -1.14
VPS39-208ENST00000564994 ANXA3P12429 323 aa7.9□□□□□ -1.14
VPS39-208ENST00000564994 ETFRF1Q6IPR1 90 aa7.9□□□□□ -1.14
VPS39-208ENST00000564994 TMED4Q7Z7H5 227 aa7.9□□□□□ -1.14
VPS39-208ENST00000564994 TRPT1Q86TN4 253 aaKnown RBP7.9□□□□□ -1.14
VPS39-208ENST00000564994 TOMM5Q8N4H5 51 aa7.9□□□□□ -1.14
VPS39-208ENST00000564994 TMEM217Q8N7C4 229 aa7.9□□□□□ -1.14
VPS39-208ENST00000564994 GRAMD2BQ96HH9 432 aa7.9□□□□□ -1.14
VPS39-208ENST00000564994 CACFD1Q9UGQ2 172 aa7.9□□□□□ -1.14
VPS39-208ENST00000564994 U3KQ87 197 aa7.9□□□□□ -1.14
VPS39-208ENST00000564994 IGKV1D-37A0A075B6S9 117 aa7.89□□□□□ -1.15
VPS39-208ENST00000564994 CCDC160A6NGH7 325 aa7.89□□□□□ -1.15
VPS39-208ENST00000564994 KNCNA6PVL3 124 aa7.89□□□□□ -1.15
VPS39-208ENST00000564994 DEFB4AO15263 64 aa7.89□□□□□ -1.15
VPS39-208ENST00000564994 BUB3O43684 328 aa7.89□□□□□ -1.15
VPS39-208ENST00000564994 RD3LP0DJH9 198 aa7.89□□□□□ -1.15
VPS39-208ENST00000564994 PSG1P11464 419 aa7.89□□□□□ -1.15
VPS39-208ENST00000564994 C4BPBP20851 252 aa7.89□□□□□ -1.15
VPS39-208ENST00000564994 FAUP35544 74 aaKnown RBP7.89□□□□□ -1.15
VPS39-208ENST00000564994 SRPXP78539 464 aa7.89□□□□□ -1.15
VPS39-208ENST00000564994 TMEM128Q5BJH2 165 aa7.89□□□□□ -1.15
VPS39-208ENST00000564994 CCDC190Q86UF4 302 aa7.89□□□□□ -1.15
VPS39-208ENST00000564994 NOXA1Q86UR1 476 aa7.89□□□□□ -1.15
VPS39-208ENST00000564994 STHQ8IWL8 128 aa7.89□□□□□ -1.15
VPS39-208ENST00000564994 OR1S1Q8NH92 325 aa7.89□□□□□ -1.15
VPS39-208ENST00000564994 PHLDA1Q8WV24 401 aaPredicted RBP7.89□□□□□ -1.15
VPS39-208ENST00000564994 NARS2Q96I59 477 aaKnown RBP7.89□□□□□ -1.15
VPS39-208ENST00000564994 DUXBA0A1W2PPF3 345 aa7.88□□□□□ -1.15
VPS39-208ENST00000564994 HELTA6NFD8 242 aa7.88□□□□□ -1.15
VPS39-208ENST00000564994 LY6G6CO95867 125 aa7.88□□□□□ -1.15
VPS39-208ENST00000564994 IFNA4P05014 189 aa7.88□□□□□ -1.15
VPS39-208ENST00000564994 AP3S2P59780 193 aa7.88□□□□□ -1.15
VPS39-208ENST00000564994 NANOS2P60321 138 aaKnown RBP7.88□□□□□ -1.15
VPS39-208ENST00000564994 ZNF90Q03938 601 aa7.88□□□□□ -1.15
VPS39-208ENST00000564994 DHRS2Q13268 280 aa7.88□□□□□ -1.15
VPS39-208ENST00000564994 GAMTQ14353 236 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms