RNA–Protein interactions for RNA: ENST00000529526.5

CTNND1-220, Transcript of catenin delta 1, humanhuman

TSL 1 (best) BASIC

Gene CTNND1, Length 6,099 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-220ENST00000529526 TRAV3A0A0B4J244 114 aa6.72□□□□□ -1.33
CTNND1-220ENST00000529526 A0A1B0GW15 77 aa6.72□□□□□ -1.33
CTNND1-220ENST00000529526 HGFACQ04756 655 aa6.72□□□□□ -1.33
CTNND1-220ENST00000529526 PRSS22Q9GZN4 317 aa6.72□□□□□ -1.33
CTNND1-220ENST00000529526 IGHV3-64A0A075B6Q5 118 aa6.71□□□□□ -1.33
CTNND1-220ENST00000529526 A0A1B0GWB2 263 aa6.71□□□□□ -1.33
CTNND1-220ENST00000529526 ID3Q02535 119 aa6.71□□□□□ -1.33
CTNND1-220ENST00000529526 TMEM42Q69YG0 159 aa6.71□□□□□ -1.33
CTNND1-220ENST00000529526 MTURNQ8N3F0 131 aa6.71□□□□□ -1.33
CTNND1-220ENST00000529526 SLC50A1Q9BRV3 221 aa6.71□□□□□ -1.33
CTNND1-220ENST00000529526 TRAV9-1A0A075B6T8 112 aa6.71□□□□□ -1.33
CTNND1-220ENST00000529526 A0A1B0GV72 72 aa6.71□□□□□ -1.33
CTNND1-220ENST00000529526 PSPNO60542 156 aa6.71□□□□□ -1.33
CTNND1-220ENST00000529526 ZNF672Q499Z4 452 aaPredicted RBP6.71□□□□□ -1.33
CTNND1-220ENST00000529526 MAP1BP46821 2468 aaKnown RBP6.71□□□□□ -1.34
CTNND1-220ENST00000529526 CABIN1Q9Y6J0 2220 aa6.71□□□□□ -1.34
CTNND1-220ENST00000529526 E9PLN8 166 aa6.71□□□□□ -1.34
CTNND1-220ENST00000529526 IGHV4-39P01824 125 aa6.71□□□□□ -1.34
CTNND1-220ENST00000529526 CNTFRP26992 372 aa6.71□□□□□ -1.34
CTNND1-220ENST00000529526 SIGLEC15Q6ZMC9 328 aa6.71□□□□□ -1.34
CTNND1-220ENST00000529526 NEUROG1Q92886 237 aa6.71□□□□□ -1.34
CTNND1-220ENST00000529526 COQ2Q96H96 371 aa6.71□□□□□ -1.34
CTNND1-220ENST00000529526 ASCL2Q99929 193 aa6.71□□□□□ -1.34
CTNND1-220ENST00000529526 VKORC1Q9BQB6 163 aa6.71□□□□□ -1.34
CTNND1-220ENST00000529526 ZNF257Q9Y2Q1 563 aa6.71□□□□□ -1.34
CTNND1-220ENST00000529526 ABCA7Q8IZY2 2146 aa6.71□□□□□ -1.34
CTNND1-220ENST00000529526 TRBV7-9A0A0J9YWB2 115 aa6.71□□□□□ -1.34
CTNND1-220ENST00000529526 LINC00614P0C842 121 aa6.71□□□□□ -1.34
CTNND1-220ENST00000529526 MALP21145 153 aa6.71□□□□□ -1.34
CTNND1-220ENST00000529526 CFAP161Q6P656 301 aa6.71□□□□□ -1.34
CTNND1-220ENST00000529526 TREML4Q6UXN2 200 aa6.71□□□□□ -1.34
CTNND1-220ENST00000529526 C8orf46Q8TAG6 207 aa6.71□□□□□ -1.34
CTNND1-220ENST00000529526 C11orf68Q9H3H3 251 aaKnown RBP6.71□□□□□ -1.34
CTNND1-220ENST00000529526 TRAV12-3A0A0B4J271 114 aa6.71□□□□□ -1.34
CTNND1-220ENST00000529526 LINC00205P59089 165 aa6.71□□□□□ -1.34
CTNND1-220ENST00000529526 PSMG4Q5JS54 123 aa6.71□□□□□ -1.34
CTNND1-220ENST00000529526 PNRC2Q9NPJ4 139 aaKnown RBP6.71□□□□□ -1.34
CTNND1-220ENST00000529526 SPCS1Q9Y6A9 102 aa6.71□□□□□ -1.34
CTNND1-220ENST00000529526 CSRP1P21291 193 aaKnown RBP6.7□□□□□ -1.34
CTNND1-220ENST00000529526 PAX8Q06710 450 aa6.7□□□□□ -1.34
CTNND1-220ENST00000529526 EXOC3-AS1Q8N2X6 119 aa6.7□□□□□ -1.34
CTNND1-220ENST00000529526 IGHV3-73A0A0B4J1V6 119 aa6.7□□□□□ -1.34
CTNND1-220ENST00000529526 NPIPB5A8MRT5 1133 aa6.7□□□□□ -1.34
CTNND1-220ENST00000529526 H3BUT2 72 aa6.7□□□□□ -1.34
CTNND1-220ENST00000529526 IL18BPO95998 194 aa6.7□□□□□ -1.34
CTNND1-220ENST00000529526 TRAV21A0A0B4J279 112 aa6.7□□□□□ -1.34
CTNND1-220ENST00000529526 WNT2P09544 360 aa6.7□□□□□ -1.34
CTNND1-220ENST00000529526 MPZP25189 248 aa6.7□□□□□ -1.34
CTNND1-220ENST00000529526 TIMP3P35625 211 aa6.7□□□□□ -1.34
CTNND1-220ENST00000529526 SCRT1Q9BWW7 348 aa6.7□□□□□ -1.34
CTNND1-220ENST00000529526 VCX2Q9H322 139 aa6.7□□□□□ -1.34
CTNND1-220ENST00000529526 PLSCR4Q9NRQ2 329 aa6.7□□□□□ -1.34
CTNND1-220ENST00000529526 SVILO95425 2214 aa6.7□□□□□ -1.34
CTNND1-220ENST00000529526 MBNL3Q9NUK0 354 aaKnown RBP6.7□□□□□ -1.34
CTNND1-220ENST00000529526 TRAV41A0A0B4J266 112 aa6.7□□□□□ -1.34
CTNND1-220ENST00000529526 IGHV1-8P0DP01 117 aa6.7□□□□□ -1.34
CTNND1-220ENST00000529526 IFI27P40305 119 aaPredicted RBP6.7□□□□□ -1.34
CTNND1-220ENST00000529526 SUPT4H1P63272 117 aaKnown RBP6.7□□□□□ -1.34
CTNND1-220ENST00000529526 NIT1Q86X76 327 aa6.7□□□□□ -1.34
CTNND1-220ENST00000529526 MGST2Q99735 147 aa6.7□□□□□ -1.34
CTNND1-220ENST00000529526 PRDM13Q9H4Q3 707 aa6.7□□□□□ -1.34
CTNND1-220ENST00000529526 PGPEP1Q9NXJ5 209 aa6.7□□□□□ -1.34
CTNND1-220ENST00000529526 CACNA1IQ9P0X4 2223 aa6.69□□□□□ -1.34
CTNND1-220ENST00000529526 PMS2P5A8MQ11 134 aa6.69□□□□□ -1.34
CTNND1-220ENST00000529526 FGF16O43320 207 aa6.69□□□□□ -1.34
CTNND1-220ENST00000529526 HIST1H2BKO60814 126 aa6.69□□□□□ -1.34
CTNND1-220ENST00000529526 HIST1H2BJP06899 126 aa6.69□□□□□ -1.34
CTNND1-220ENST00000529526 HIST1H2BOP23527 126 aa6.69□□□□□ -1.34
CTNND1-220ENST00000529526 HIST1H2BBP33778 126 aa6.69□□□□□ -1.34
CTNND1-220ENST00000529526 HIST1H2BDP58876 126 aa6.69□□□□□ -1.34
CTNND1-220ENST00000529526 HIST1H2BCP62807 126 aa6.69□□□□□ -1.34
CTNND1-220ENST00000529526 SRSF1Q07955 248 aaKnown RBP eCLIP6.69□□□□□ -1.341e-7■□□□□ 10.7
CTNND1-220ENST00000529526 HIST2H2BEQ16778 126 aa6.69□□□□□ -1.34
CTNND1-220ENST00000529526 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.69□□□□□ -1.34
CTNND1-220ENST00000529526 HIST1H2BHQ93079 126 aa6.69□□□□□ -1.34
CTNND1-220ENST00000529526 HIST1H2BNQ99877 126 aa6.69□□□□□ -1.34
CTNND1-220ENST00000529526 HIST1H2BMQ99879 126 aa6.69□□□□□ -1.34
CTNND1-220ENST00000529526 FNDC4Q9H6D8 234 aaPredicted RBP6.69□□□□□ -1.34
CTNND1-220ENST00000529526 OSTCQ9NRP0 149 aa6.69□□□□□ -1.34
CTNND1-220ENST00000529526 COL4A6Q14031 1691 aa6.69□□□□□ -1.34
CTNND1-220ENST00000529526 ANK1P16157 1881 aa6.69□□□□□ -1.34
CTNND1-220ENST00000529526 IGHV1-3A0A0C4DH29 117 aa6.69□□□□□ -1.34
CTNND1-220ENST00000529526 A0A0G2JNJ9 132 aa6.69□□□□□ -1.34
CTNND1-220ENST00000529526 A0A1W2PRE2 83 aa6.69□□□□□ -1.34
CTNND1-220ENST00000529526 CXCL1P09341 107 aa6.69□□□□□ -1.34
CTNND1-220ENST00000529526 FXYD7P58549 80 aa6.69□□□□□ -1.34
CTNND1-220ENST00000529526 NDPQ00604 133 aa6.69□□□□□ -1.34
CTNND1-220ENST00000529526 FOXL1Q12952 345 aa6.69□□□□□ -1.34
CTNND1-220ENST00000529526 TMEM95Q3KNT9 176 aa6.69□□□□□ -1.34
CTNND1-220ENST00000529526 BRD3OSQ6XYD6 125 aa6.69□□□□□ -1.34
CTNND1-220ENST00000529526 BEND2Q8NDZ0 799 aa6.69□□□□□ -1.34
CTNND1-220ENST00000529526 DERL1Q9BUN8 251 aa6.69□□□□□ -1.34
CTNND1-220ENST00000529526 Q9UFV3 132 aa6.69□□□□□ -1.34
CTNND1-220ENST00000529526 WDR83OSQ9Y284 106 aa6.69□□□□□ -1.34
CTNND1-220ENST00000529526 RP1P56715 2156 aa6.69□□□□□ -1.34
CTNND1-220ENST00000529526 GNLYP22749 145 aa6.69□□□□□ -1.34
CTNND1-220ENST00000529526 C15orf32Q32M92 178 aa6.69□□□□□ -1.34
CTNND1-220ENST00000529526 TEX38Q6PEX7 206 aa6.69□□□□□ -1.34
CTNND1-220ENST00000529526 FAM169BQ8N8A8 192 aa6.69□□□□□ -1.34
CTNND1-220ENST00000529526 GGTLC1Q9BX51 225 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms