RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, human

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-223	ENST00000515459	RND3	P61587	244 aa		11.23	□□□□□ -0.61
LMNA-223	ENST00000515459	C1orf134	Q5TEV5	83 aa		11.23	□□□□□ -0.61
LMNA-223	ENST00000515459	OR1S2	Q8NGQ3	325 aa		11.23	□□□□□ -0.61
LMNA-223	ENST00000515459	NRN1	Q9NPD7	142 aa		11.23	□□□□□ -0.61
LMNA-223	ENST00000515459	NACA	E9PAV3	2078 aa		11.23	□□□□□ -0.61
LMNA-223	ENST00000515459	TEX48	A0A1B0GUV7	120 aa		11.22	□□□□□ -0.61
LMNA-223	ENST00000515459	RPS10-NUDT3	A0A1W2PQS6	291 aa		11.22	□□□□□ -0.61
LMNA-223	ENST00000515459	IGLC1	P0CG04	106 aa		11.22	□□□□□ -0.61
LMNA-223	ENST00000515459	HLA-DRB4	P13762	266 aa		11.22	□□□□□ -0.61
LMNA-223	ENST00000515459	YPEL3	P61236	119 aa	Predicted RBP	11.22	□□□□□ -0.61
LMNA-223	ENST00000515459	NEDD8	Q15843	81 aa		11.22	□□□□□ -0.61
LMNA-223	ENST00000515459	BSX	Q3C1V8	233 aa		11.22	□□□□□ -0.61
LMNA-223	ENST00000515459	ZNF486	Q96H40	463 aa	Predicted RBP	11.22	□□□□□ -0.61
LMNA-223	ENST00000515459	TP53RK	Q96S44	253 aa		11.22	□□□□□ -0.61
LMNA-223	ENST00000515459	SCPEP1	Q9HB40	452 aa		11.22	□□□□□ -0.61
LMNA-223	ENST00000515459	DKK2	Q9UBU2	259 aa		11.22	□□□□□ -0.61
LMNA-223	ENST00000515459	HLA-DRB4	X5D2U9	266 aa		11.22	□□□□□ -0.61
LMNA-223	ENST00000515459	ABCA13	Q86UQ4	5058 aa		11.22	□□□□□ -0.61
LMNA-223	ENST00000515459	IGHV3OR16-12	A0A075B7B8	117 aa		11.21	□□□□□ -0.61
LMNA-223	ENST00000515459	RCVRN	P35243	200 aa		11.21	□□□□□ -0.61
LMNA-223	ENST00000515459	TGFBR1	P36897	503 aa		11.21	□□□□□ -0.61
LMNA-223	ENST00000515459	RPS19	P39019	145 aa	Known RBP	11.21	□□□□□ -0.61
LMNA-223	ENST00000515459	PIGP	P57054	158 aa		11.21	□□□□□ -0.61
LMNA-223	ENST00000515459	DHODH	Q02127	395 aa		11.21	□□□□□ -0.61
LMNA-223	ENST00000515459	SIGLEC15	Q6ZMC9	328 aa		11.21	□□□□□ -0.61
LMNA-223	ENST00000515459	RRNAD1	Q96FB5	475 aa	Known RBP	11.21	□□□□□ -0.61
LMNA-223	ENST00000515459	NIPSNAP3B	Q9BS92	247 aa		11.21	□□□□□ -0.61
LMNA-223	ENST00000515459	RFNG	Q9Y644	331 aa		11.21	□□□□□ -0.61
LMNA-223	ENST00000515459	C3orf85	A0A1B0GTC6	90 aa		11.2	□□□□□ -0.62
LMNA-223	ENST00000515459	SMIM31	A0A1B0GVY4	71 aa		11.2	□□□□□ -0.62
LMNA-223	ENST00000515459	BUB3	O43684	328 aa		11.2	□□□□□ -0.62
LMNA-223	ENST00000515459	IL4	P05112	153 aa		11.2	□□□□□ -0.62
LMNA-223	ENST00000515459	SLC25A4	P12235	298 aa		11.2	□□□□□ -0.62
LMNA-223	ENST00000515459	PI3	P19957	117 aa		11.2	□□□□□ -0.62
LMNA-223	ENST00000515459	OR10J1	P30954	320 aa		11.2	□□□□□ -0.62
LMNA-223	ENST00000515459	HTR2B	P41595	481 aa		11.2	□□□□□ -0.62
LMNA-223	ENST00000515459	NKX2-1	P43699	371 aa	Predicted RBP	11.2	□□□□□ -0.62
LMNA-223	ENST00000515459	RND2	P52198	227 aa		11.2	□□□□□ -0.62
LMNA-223	ENST00000515459	USF2	Q15853	346 aa	Predicted RBP	11.2	□□□□□ -0.62
LMNA-223	ENST00000515459	TRIM16L	Q309B1	348 aa		11.2	□□□□□ -0.62
LMNA-223	ENST00000515459	FAM222A	Q5U5X8	452 aa		11.2	□□□□□ -0.62
LMNA-223	ENST00000515459	PRSS54	Q6PEW0	395 aa		11.2	□□□□□ -0.62
LMNA-223	ENST00000515459		Q9H521	79 aa		11.2	□□□□□ -0.62
LMNA-223	ENST00000515459		M0QYG6	137 aa		11.19	□□□□□ -0.62
LMNA-223	ENST00000515459	GSTZ1	O43708	216 aa	Predicted RBP	11.19	□□□□□ -0.62
LMNA-223	ENST00000515459	CDK2AP2	O75956	126 aa		11.19	□□□□□ -0.62
LMNA-223	ENST00000515459	IGKV3-20	P01619	116 aa		11.19	□□□□□ -0.62
LMNA-223	ENST00000515459	HTN3	P15516	51 aa		11.19	□□□□□ -0.62
LMNA-223	ENST00000515459	FXYD7	P58549	80 aa		11.19	□□□□□ -0.62
LMNA-223	ENST00000515459	SPCS3	P61009	180 aa		11.19	□□□□□ -0.62
LMNA-223	ENST00000515459	OXA1L	Q15070	435 aa		11.19	□□□□□ -0.62
LMNA-223	ENST00000515459	SNX29P2	Q8IUI4	249 aa		11.19	□□□□□ -0.62
LMNA-223	ENST00000515459	RNASE11	Q8TAA1	199 aa	Known RBP	11.19	□□□□□ -0.62
LMNA-223	ENST00000515459		A0A0G2JRQ6	117 aa		11.18	□□□□□ -0.62
LMNA-223	ENST00000515459	C16orf90	A8MZG2	172 aa		11.18	□□□□□ -0.62
LMNA-223	ENST00000515459	SP6	Q3SY56	376 aa		11.18	□□□□□ -0.62
LMNA-223	ENST00000515459	C2orf83	Q53S99	150 aa		11.18	□□□□□ -0.62
LMNA-223	ENST00000515459	GDF5OS	Q5U4N7	250 aa		11.18	□□□□□ -0.62
LMNA-223	ENST00000515459	MAPKAPK5-AS1	Q8N8E1	139 aa		11.18	□□□□□ -0.62
LMNA-223	ENST00000515459	OR52E5	Q8NH55	327 aa		11.18	□□□□□ -0.62
LMNA-223	ENST00000515459	RNASEH2C	Q8TDP1	164 aa	Known RBP	11.18	□□□□□ -0.62
LMNA-223	ENST00000515459	HEYL	Q9NQ87	328 aa	Predicted RBP	11.18	□□□□□ -0.62
LMNA-223	ENST00000515459	TOMM40	O96008	361 aa		11.17	□□□□□ -0.62
LMNA-223	ENST00000515459	AARD	Q4LEZ3	155 aa		11.17	□□□□□ -0.62
LMNA-223	ENST00000515459	LHFPL1	Q86WI0	220 aa		11.17	□□□□□ -0.62
LMNA-223	ENST00000515459	SAV1	Q9H4B6	383 aa	Predicted RBP	11.17	□□□□□ -0.62
LMNA-223	ENST00000515459	CTNNBIP1	Q9NSA3	81 aa	Predicted RBP	11.17	□□□□□ -0.62
LMNA-223	ENST00000515459	COPZ2	Q9P299	210 aa		11.17	□□□□□ -0.62
LMNA-223	ENST00000515459	COMMD3	Q9UBI1	195 aa		11.17	□□□□□ -0.62
LMNA-223	ENST00000515459	TMED3	Q9Y3Q3	217 aa		11.17	□□□□□ -0.62
LMNA-223	ENST00000515459	APOA1	P02647	267 aa		11.16	□□□□□ -0.62
LMNA-223	ENST00000515459	RD3L	P0DJH9	198 aa		11.16	□□□□□ -0.62
LMNA-223	ENST00000515459	UCP1	P25874	307 aa		11.16	□□□□□ -0.62
LMNA-223	ENST00000515459	FAM3B	P58499	235 aa	Predicted RBP	11.16	□□□□□ -0.62
LMNA-223	ENST00000515459	DEFB1	P60022	68 aa		11.16	□□□□□ -0.62
LMNA-223	ENST00000515459	LSM3	P62310	102 aa	Known RBP	11.16	□□□□□ -0.62
LMNA-223	ENST00000515459	RNASE10	Q5GAN6	216 aa	Known RBP	11.16	□□□□□ -0.62
LMNA-223	ENST00000515459	ETFRF1	Q6IPR1	90 aa		11.16	□□□□□ -0.62
LMNA-223	ENST00000515459	TMEM88	Q6PEY1	159 aa		11.16	□□□□□ -0.62
LMNA-223	ENST00000515459	FOXI2	Q6ZQN5	318 aa		11.16	□□□□□ -0.62
LMNA-223	ENST00000515459	FAM219A	Q8IW50	185 aa		11.16	□□□□□ -0.62
LMNA-223	ENST00000515459	ARRDC1	Q8N5I2	433 aa		11.16	□□□□□ -0.62
LMNA-223	ENST00000515459	ZNF709	Q8N972	641 aa		11.16	□□□□□ -0.62
LMNA-223	ENST00000515459	CCDC71L	Q8N9Z2	235 aa		11.16	□□□□□ -0.62
LMNA-223	ENST00000515459	SLC24A4	Q8NFF2	622 aa		11.16	□□□□□ -0.62
LMNA-223	ENST00000515459	NPIPB3	Q92617	1050 aa		11.16	□□□□□ -0.62
LMNA-223	ENST00000515459	LINC00052	Q96N35	136 aa		11.16	□□□□□ -0.62
LMNA-223	ENST00000515459	CLUHP3	Q96NS8	147 aa		11.16	□□□□□ -0.62
LMNA-223	ENST00000515459	GOLT1B	Q9Y3E0	138 aa		11.16	□□□□□ -0.62
LMNA-223	ENST00000515459	YTHDF2	Q9Y5A9	579 aa	Known RBP	11.16	□□□□□ -0.62
LMNA-223	ENST00000515459	HSPG2	P98160	4391 aa		11.15	□□□□□ -0.62
LMNA-223	ENST00000515459	B3GALNT1	O75752	331 aa		11.15	□□□□□ -0.62
LMNA-223	ENST00000515459	HBE1	P02100	147 aa		11.15	□□□□□ -0.62
LMNA-223	ENST00000515459	ID1	P41134	155 aa		11.15	□□□□□ -0.62
LMNA-223	ENST00000515459	TNP2	Q05952	138 aa		11.15	□□□□□ -0.62
LMNA-223	ENST00000515459	OR4B1	Q8NGF8	309 aa		11.15	□□□□□ -0.62
LMNA-223	ENST00000515459	ZFAND1	Q8TCF1	268 aa		11.15	□□□□□ -0.62
LMNA-223	ENST00000515459	ACY3	Q96HD9	319 aa		11.15	□□□□□ -0.62
LMNA-223	ENST00000515459	LOC102723971	A0A1B0GUV8	181 aa		11.14	□□□□□ -0.63
LMNA-223	ENST00000515459	PSG1	P11464	419 aa		11.14	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms