RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 ZNF826PQ6ZT77 177 aa2.88□□□□□ -1.95
NUP54-215ENST00000514313 FP248Q71RG6 208 aaPredicted RBP2.88□□□□□ -1.95
NUP54-215ENST00000514313 C10orf126Q8N4M7 172 aa2.88□□□□□ -1.95
NUP54-215ENST00000514313 HOPXQ9BPY8 73 aaPredicted RBP2.88□□□□□ -1.95
NUP54-215ENST00000514313 MED29Q9NX70 200 aa2.88□□□□□ -1.95
NUP54-215ENST00000514313 PRNDQ9UKY0 176 aa2.88□□□□□ -1.95
NUP54-215ENST00000514313 CCDC88CQ9P219 2028 aa2.87□□□□□ -1.95
NUP54-215ENST00000514313 TMEM212A6NML5 194 aa2.87□□□□□ -1.95
NUP54-215ENST00000514313 OR5F1O95221 314 aa2.87□□□□□ -1.95
NUP54-215ENST00000514313 IFNA1P01562 189 aa2.87□□□□□ -1.95
NUP54-215ENST00000514313 OR13D1Q8NGV5 346 aa2.87□□□□□ -1.95
NUP54-215ENST00000514313 STAG3L4Q8TBR4 150 aa2.87□□□□□ -1.95
NUP54-215ENST00000514313 AQP3Q92482 292 aa2.87□□□□□ -1.95
NUP54-215ENST00000514313 EPDR1Q9UM22 224 aa2.87□□□□□ -1.95
NUP54-215ENST00000514313 IFNA7P01567 189 aa2.86□□□□□ -1.95
NUP54-215ENST00000514313 GNG5P63218 68 aa2.86□□□□□ -1.95
NUP54-215ENST00000514313 RRN3P1Q2M238 152 aa2.86□□□□□ -1.95
NUP54-215ENST00000514313 OR4D11Q8NGI4 311 aa2.86□□□□□ -1.95
NUP54-215ENST00000514313 HIST1H2BLQ99880 126 aa2.86□□□□□ -1.95
NUP54-215ENST00000514313 IMUPQ9GZP8 106 aa2.86□□□□□ -1.95
NUP54-215ENST00000514313 MIXL1Q9H2W2 232 aa2.86□□□□□ -1.95
NUP54-215ENST00000514313 COL11A1P12107 1806 aaPredicted RBP2.86□□□□□ -1.95
NUP54-215ENST00000514313 RIC1Q4ADV7 1423 aa2.85□□□□□ -1.95
NUP54-215ENST00000514313 FMN1Q68DA7 1419 aa2.85□□□□□ -1.95
NUP54-215ENST00000514313 MIA2Q96PC5 1412 aa2.85□□□□□ -1.95
NUP54-215ENST00000514313 ECM29Q5VYK3 1845 aa2.85□□□□□ -1.95
NUP54-215ENST00000514313 RPSAP08865 295 aaKnown RBP2.85□□□□□ -1.95
NUP54-215ENST00000514313 EIF5AP63241 154 aaKnown RBP2.85□□□□□ -1.95
NUP54-215ENST00000514313 POU6F1Q14863 301 aa2.85□□□□□ -1.95
NUP54-215ENST00000514313 EXOC3-AS1Q8N2X6 119 aa2.85□□□□□ -1.95
NUP54-215ENST00000514313 LINC00471Q8N535 108 aa2.85□□□□□ -1.95
NUP54-215ENST00000514313 SS18L2Q9UHA2 77 aa2.85□□□□□ -1.95
NUP54-215ENST00000514313 SETD5Q9C0A6 1442 aa2.85□□□□□ -1.95
NUP54-215ENST00000514313 GLI3P10071 1580 aa2.84□□□□□ -1.95
NUP54-215ENST00000514313 VBP1P61758 197 aa2.84□□□□□ -1.95
NUP54-215ENST00000514313 SMIM20Q8N5G0 67 aa2.84□□□□□ -1.95
NUP54-215ENST00000514313 SLAMF6Q96DU3 332 aa2.84□□□□□ -1.95
NUP54-215ENST00000514313 SLC50A1Q9BRV3 221 aa2.84□□□□□ -1.95
NUP54-215ENST00000514313 KIF1BO60333 1816 aa2.84□□□□□ -1.96
NUP54-215ENST00000514313 TRBV6-5A0A0K0K1A5 114 aa2.83□□□□□ -1.96
NUP54-215ENST00000514313 G3V2T6 193 aa2.83□□□□□ -1.96
NUP54-215ENST00000514313 NDUFC2O95298 119 aa2.83□□□□□ -1.96
NUP54-215ENST00000514313 RNASE4P34096 147 aaKnown RBP2.83□□□□□ -1.96
NUP54-215ENST00000514313 SRP14P37108 136 aaKnown RBP2.83□□□□□ -1.96
NUP54-215ENST00000514313 TAS2R41P59536 307 aa2.83□□□□□ -1.96
NUP54-215ENST00000514313 GNG3P63215 75 aa2.83□□□□□ -1.96
NUP54-215ENST00000514313 AKR1C8PQ5T2L2 129 aa2.83□□□□□ -1.96
NUP54-215ENST00000514313 OR13C6PQ8NH95 151 aa2.83□□□□□ -1.96
NUP54-215ENST00000514313 NEK7Q8TDX7 302 aa2.83□□□□□ -1.96
NUP54-215ENST00000514313 SERPINI1Q99574 410 aa2.83□□□□□ -1.96
NUP54-215ENST00000514313 GINS3Q9BRX5 216 aa2.83□□□□□ -1.96
NUP54-215ENST00000514313 F8W036 122 aa2.82□□□□□ -1.96
NUP54-215ENST00000514313 PHBP35232 272 aa2.82□□□□□ -1.96
NUP54-215ENST00000514313 TSNQ15631 228 aaKnown RBP2.82□□□□□ -1.96
NUP54-215ENST00000514313 MED1Q15648 1581 aaPredicted RBP2.82□□□□□ -1.96
NUP54-215ENST00000514313 RTTNQ86VV8 2226 aa2.81□□□□□ -1.96
NUP54-215ENST00000514313 TAX1BP3O14907 124 aa2.81□□□□□ -1.96
NUP54-215ENST00000514313 CST8O60676 142 aa2.81□□□□□ -1.96
NUP54-215ENST00000514313 ZNF563Q8TA94 476 aa2.81□□□□□ -1.96
NUP54-215ENST00000514313 TAS2R4Q9NYW5 299 aa2.81□□□□□ -1.96
NUP54-215ENST00000514313 UFC1Q9Y3C8 167 aa2.81□□□□□ -1.96
NUP54-215ENST00000514313 TRAV1-1A0A0B4J248 108 aa2.8□□□□□ -1.96
NUP54-215ENST00000514313 C7orf71A4D174 169 aa2.8□□□□□ -1.96
NUP54-215ENST00000514313 H7C1C5 153 aa2.8□□□□□ -1.96
NUP54-215ENST00000514313 OR2T1O43869 369 aa2.8□□□□□ -1.96
NUP54-215ENST00000514313 CRYBA4P53673 196 aa2.8□□□□□ -1.96
NUP54-215ENST00000514313 LCN6P62502 163 aa2.8□□□□□ -1.96
NUP54-215ENST00000514313 SPANXN5Q5MJ07 72 aa2.8□□□□□ -1.96
NUP54-215ENST00000514313 SH3BGRL3Q9H299 93 aa2.8□□□□□ -1.96
NUP54-215ENST00000514313 BAZ2BQ9UIF8 2168 aaKnown RBP2.8□□□□□ -1.96
NUP54-215ENST00000514313 FREM1Q5H8C1 2179 aa2.79□□□□□ -1.96
NUP54-215ENST00000514313 TRAV3A0A0B4J244 114 aa2.79□□□□□ -1.96
NUP54-215ENST00000514313 BANF1O75531 89 aa2.79□□□□□ -1.96
NUP54-215ENST00000514313 ASAH2BP0C7U1 165 aa2.79□□□□□ -1.96
NUP54-215ENST00000514313 MGST1P10620 155 aaKnown RBP2.79□□□□□ -1.96
NUP54-215ENST00000514313 OR10J5Q8NHC4 309 aa2.79□□□□□ -1.96
NUP54-215ENST00000514313 MRPL32Q9BYC8 188 aaKnown RBP2.79□□□□□ -1.96
NUP54-215ENST00000514313 LYRM2Q9NU23 88 aaPredicted RBP2.79□□□□□ -1.96
NUP54-215ENST00000514313 SSR3Q9UNL2 185 aa2.79□□□□□ -1.96
NUP54-215ENST00000514313 STRCQ7RTU9 1775 aa2.79□□□□□ -1.96
NUP54-215ENST00000514313 FUOMA2VDF0 154 aa2.78□□□□□ -1.96
NUP54-215ENST00000514313 M0R378 163 aa2.78□□□□□ -1.96
NUP54-215ENST00000514313 AIPO00170 330 aa2.78□□□□□ -1.96
NUP54-215ENST00000514313 MFSD11O43934 449 aa2.78□□□□□ -1.96
NUP54-215ENST00000514313 RNASE10Q5GAN6 216 aaKnown RBP2.78□□□□□ -1.96
NUP54-215ENST00000514313 BRMS1LQ5PSV4 323 aa2.78□□□□□ -1.96
NUP54-215ENST00000514313 RPS19BP1Q86WX3 136 aaKnown RBP2.78□□□□□ -1.96
NUP54-215ENST00000514313 STX12Q86Y82 276 aa2.78□□□□□ -1.96
NUP54-215ENST00000514313 PHF13Q86YI8 300 aaPredicted RBP2.78□□□□□ -1.96
NUP54-215ENST00000514313 C3orf56Q8N813 242 aa2.78□□□□□ -1.96
NUP54-215ENST00000514313 PRADC1Q9BSG0 188 aa2.78□□□□□ -1.96
NUP54-215ENST00000514313 NHP2Q9NX24 153 aaKnown RBP2.78□□□□□ -1.96
NUP54-215ENST00000514313 SLC35A3Q9Y2D2 325 aa2.78□□□□□ -1.96
NUP54-215ENST00000514313 ZFHX2Q9C0A1 2572 aaPredicted RBP2.78□□□□□ -1.96
NUP54-215ENST00000514313 PCDH15Q96QU1 1955 aa2.78□□□□□ -1.97
NUP54-215ENST00000514313 MIFP14174 115 aa2.77□□□□□ -1.97
NUP54-215ENST00000514313 TMEM126AQ9H061 195 aa2.77□□□□□ -1.97
NUP54-215ENST00000514313 BOLA2Q9H3K6 86 aa2.77□□□□□ -1.97
NUP54-215ENST00000514313 CR1P17927 2039 aa2.76□□□□□ -1.97
NUP54-215ENST00000514313 BAALC-AS2P0C853 105 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms