RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 SULT1A1P50225 295 aa11.48□□□□□ -0.57
NUP54-213ENST00000513352 DLK1P80370 383 aa11.48□□□□□ -0.57
NUP54-213ENST00000513352 EWSR1Q01844 656 aaKnown RBP eCLIP11.48□□□□□ -0.57
NUP54-213ENST00000513352 ARL16Q0P5N6 197 aa11.48□□□□□ -0.57
NUP54-213ENST00000513352 TIGITQ495A1 244 aa11.48□□□□□ -0.57
NUP54-213ENST00000513352 HAPLN4Q86UW8 402 aa11.48□□□□□ -0.57
NUP54-213ENST00000513352 C1QL4Q86Z23 238 aa11.48□□□□□ -0.57
NUP54-213ENST00000513352 TMEM116Q8NCL8 245 aa11.48□□□□□ -0.57
NUP54-213ENST00000513352 A0A1B0GVG6 124 aa11.47□□□□□ -0.57
NUP54-213ENST00000513352 PMS2P5A8MQ11 134 aa11.47□□□□□ -0.57
NUP54-213ENST00000513352 SMLR1H3BR10 107 aa11.47□□□□□ -0.57
NUP54-213ENST00000513352 ADMP35318 185 aa11.47□□□□□ -0.57
NUP54-213ENST00000513352 NUP62P37198 522 aaPredicted RBP11.47□□□□□ -0.57
NUP54-213ENST00000513352 KLF5Q13887 457 aaPredicted RBP11.47□□□□□ -0.57
NUP54-213ENST00000513352 Q5BKY6 102 aa11.47□□□□□ -0.57
NUP54-213ENST00000513352 TREML4Q6UXN2 200 aa11.47□□□□□ -0.57
NUP54-213ENST00000513352 OR1S2Q8NGQ3 325 aa11.47□□□□□ -0.57
NUP54-213ENST00000513352 C20orf24Q9BUV8 137 aa11.47□□□□□ -0.57
NUP54-213ENST00000513352 IGHV3OR16-8A0A075B7F1 116 aa11.46□□□□□ -0.57
NUP54-213ENST00000513352 IGLC1P0CG04 106 aa11.46□□□□□ -0.57
NUP54-213ENST00000513352 RPL12P30050 165 aaKnown RBP11.46□□□□□ -0.57
NUP54-213ENST00000513352 S100A11P31949 105 aa11.46□□□□□ -0.57
NUP54-213ENST00000513352 NHLH2Q02577 135 aa11.46□□□□□ -0.57
NUP54-213ENST00000513352 PRR31Q5SQ13 230 aa11.46□□□□□ -0.57
NUP54-213ENST00000513352 UBE2L5PA0A1B0GUS4 154 aa11.45□□□□□ -0.58
NUP54-213ENST00000513352 NDUFA4O00483 81 aa11.45□□□□□ -0.58
NUP54-213ENST00000513352 LYL1P12980 280 aa11.45□□□□□ -0.58
NUP54-213ENST00000513352 BAXQ07812 192 aa11.45□□□□□ -0.58
NUP54-213ENST00000513352 CLINT1Q14677 625 aa11.45□□□□□ -0.58
NUP54-213ENST00000513352 ZNF600Q6ZNG1 722 aa11.45□□□□□ -0.58
NUP54-213ENST00000513352 GPHB5Q86YW7 130 aa11.45□□□□□ -0.58
NUP54-213ENST00000513352 OR9G4Q8NGQ1 327 aa11.45□□□□□ -0.58
NUP54-213ENST00000513352 TMEM147Q9BVK8 224 aa11.45□□□□□ -0.58
NUP54-213ENST00000513352 GGACTQ9BVM4 153 aa11.45□□□□□ -0.58
NUP54-213ENST00000513352 ELOVL1Q9BW60 279 aa11.45□□□□□ -0.58
NUP54-213ENST00000513352 UQCC1Q9NVA1 299 aa11.45□□□□□ -0.58
NUP54-213ENST00000513352 PEMTQ9UBM1 199 aa11.45□□□□□ -0.58
NUP54-213ENST00000513352 HSPB11Q9Y547 144 aa11.45□□□□□ -0.58
NUP54-213ENST00000513352 PUS1Q9Y606 427 aaKnown RBP eCLIP11.45□□□□□ -0.58
NUP54-213ENST00000513352 ANK2Q01484 3957 aa11.44□□□□□ -0.58
NUP54-213ENST00000513352 VWFP04275 2813 aa11.44□□□□□ -0.58
NUP54-213ENST00000513352 SEC14L6B5MCN3 397 aa11.44□□□□□ -0.58
NUP54-213ENST00000513352 ZNF207O43670 478 aaKnown RBP11.44□□□□□ -0.58
NUP54-213ENST00000513352 IGKV1-17P01599 117 aa11.44□□□□□ -0.58
NUP54-213ENST00000513352 FABP1P07148 127 aa11.44□□□□□ -0.58
NUP54-213ENST00000513352 UNQ9165/PRO28630Q6UXU0 137 aa11.44□□□□□ -0.58
NUP54-213ENST00000513352 REC114Q7Z4M0 266 aa11.44□□□□□ -0.58
NUP54-213ENST00000513352 TMEM144Q7Z5S9 345 aa11.44□□□□□ -0.58
NUP54-213ENST00000513352 ZNF546Q86UE3 836 aa11.44□□□□□ -0.58
NUP54-213ENST00000513352 AKAP14Q86UN6 197 aa11.44□□□□□ -0.58
NUP54-213ENST00000513352 INO80EQ8NBZ0 244 aaPredicted RBP11.44□□□□□ -0.58
NUP54-213ENST00000513352 OR5C1Q8NGR4 320 aa11.44□□□□□ -0.58
NUP54-213ENST00000513352 RCC1LQ96I51 464 aaKnown RBP11.44□□□□□ -0.58
NUP54-213ENST00000513352 SMIM3Q9BZL3 60 aa11.44□□□□□ -0.58
NUP54-213ENST00000513352 NPVFQ9HCQ7 196 aa11.44□□□□□ -0.58
NUP54-213ENST00000513352 UFC1Q9Y3C8 167 aa11.44□□□□□ -0.58
NUP54-213ENST00000513352 FNDC10F2Z333 226 aa11.43□□□□□ -0.58
NUP54-213ENST00000513352 SAP30O75446 220 aa11.43□□□□□ -0.58
NUP54-213ENST00000513352 RD3LP0DJH9 198 aa11.43□□□□□ -0.58
NUP54-213ENST00000513352 IGLL1P15814 213 aa11.43□□□□□ -0.58
NUP54-213ENST00000513352 YPEL3P61236 119 aaPredicted RBP11.43□□□□□ -0.58
NUP54-213ENST00000513352 ZNF90Q03938 601 aa11.43□□□□□ -0.58
NUP54-213ENST00000513352 OR2F1Q13607 317 aa11.43□□□□□ -0.58
NUP54-213ENST00000513352 ATP6V1FQ16864 119 aa11.43□□□□□ -0.58
NUP54-213ENST00000513352 THAP8Q8NA92 274 aa11.43□□□□□ -0.58
NUP54-213ENST00000513352 Q8WTZ3 238 aa11.43□□□□□ -0.58
NUP54-213ENST00000513352 TMEM190Q8WZ59 177 aa11.43□□□□□ -0.58
NUP54-213ENST00000513352 TRGV9Q99603 122 aa11.43□□□□□ -0.58
NUP54-213ENST00000513352 MCRIP2Q9BUT9 160 aaKnown RBP11.43□□□□□ -0.58
NUP54-213ENST00000513352 IGKV1D-37A0A075B6S9 117 aa11.42□□□□□ -0.58
NUP54-213ENST00000513352 IGKV1OR2-108A0A075B7D4 117 aa11.42□□□□□ -0.58
NUP54-213ENST00000513352 LGALS9O00182 355 aa11.42□□□□□ -0.58
NUP54-213ENST00000513352 TOMM40O96008 361 aa11.42□□□□□ -0.58
NUP54-213ENST00000513352 AP2S1P53680 142 aaPredicted RBP11.42□□□□□ -0.58
NUP54-213ENST00000513352 TM4SF20Q53R12 229 aa11.42□□□□□ -0.58
NUP54-213ENST00000513352 TEPPQ6URK8 271 aa11.42□□□□□ -0.58
NUP54-213ENST00000513352 TOMM20LQ6UXN7 152 aa11.42□□□□□ -0.58
NUP54-213ENST00000513352 DYNLRB2Q8TF09 96 aa11.42□□□□□ -0.58
NUP54-213ENST00000513352 GINS3Q9BRX5 216 aa11.42□□□□□ -0.58
NUP54-213ENST00000513352 PBDC1Q9BVG4 233 aa11.42□□□□□ -0.58
NUP54-213ENST00000513352 NOTCH3Q9UM47 2321 aa11.41□□□□□ -0.58
NUP54-213ENST00000513352 G3V3Q6 166 aa11.41□□□□□ -0.58
NUP54-213ENST00000513352 ARPC5O15511 151 aa11.41□□□□□ -0.58
NUP54-213ENST00000513352 IL4P05112 153 aa11.41□□□□□ -0.58
NUP54-213ENST00000513352 PSG1P11464 419 aa11.41□□□□□ -0.58
NUP54-213ENST00000513352 FGF7P21781 194 aa11.41□□□□□ -0.58
NUP54-213ENST00000513352 LYZP61626 148 aa11.41□□□□□ -0.58
NUP54-213ENST00000513352 C9orf66Q5T8R8 295 aa11.41□□□□□ -0.58
NUP54-213ENST00000513352 CYP2G1PQ6ZSU1 146 aa11.41□□□□□ -0.58
NUP54-213ENST00000513352 WFDC9Q8NEX5 89 aa11.41□□□□□ -0.58
NUP54-213ENST00000513352 ST6GAL2Q96JF0 529 aa11.41□□□□□ -0.58
NUP54-213ENST00000513352 ATP5SQ99766 215 aa11.41□□□□□ -0.58
NUP54-213ENST00000513352 DAZ1Q9NQZ3 744 aaKnown RBP11.41□□□□□ -0.58
NUP54-213ENST00000513352 IGHV3-49A0A0A0MS15 119 aa11.4□□□□□ -0.58
NUP54-213ENST00000513352 C2orf70A6NJV1 201 aa11.4□□□□□ -0.58
NUP54-213ENST00000513352 A8MWP6 167 aa11.4□□□□□ -0.58
NUP54-213ENST00000513352 DFFBO76075 338 aa11.4□□□□□ -0.58
NUP54-213ENST00000513352 EDN2P20800 178 aa11.4□□□□□ -0.58
NUP54-213ENST00000513352 RAB31Q13636 194 aa11.4□□□□□ -0.58
NUP54-213ENST00000513352 BTNL8Q6UX41 500 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 100.9 ms