RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 ZNF471Q9BX82 626 aaPredicted RBP14.98□□□□□ -0.01
USP39-218ENST00000493829 NPVFQ9HCQ7 196 aa14.98□□□□□ -0.01
USP39-218ENST00000493829 IFNA5P01569 189 aa14.97□□□□□ -0.01
USP39-218ENST00000493829 LGALS1P09382 135 aaKnown RBP14.97□□□□□ -0.01
USP39-218ENST00000493829 RUNX1Q01196 453 aa14.97□□□□□ -0.01
USP39-218ENST00000493829 OPCMLQ14982 345 aa14.97□□□□□ -0.01
USP39-218ENST00000493829 ZNF343Q6P1L6 599 aa14.97□□□□□ -0.01
USP39-218ENST00000493829 TMEM144Q7Z5S9 345 aa14.97□□□□□ -0.01
USP39-218ENST00000493829 HSD17B11Q8NBQ5 300 aa14.97□□□□□ -0.01
USP39-218ENST00000493829 CHRDL1Q9BU40 450 aa14.97□□□□□ -0.01
USP39-218ENST00000493829 CYTL1Q9NRR1 136 aa14.97□□□□□ -0.01
USP39-218ENST00000493829 WDR83OSQ9Y284 106 aa14.97□□□□□ -0.01
USP39-218ENST00000493829 IGKV1D-37A0A075B6S9 117 aa14.97□□□□□ -0.01
USP39-218ENST00000493829 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP14.97□□□□□ -0.01
USP39-218ENST00000493829 TAAR5O14804 337 aa14.97□□□□□ -0.01
USP39-218ENST00000493829 ARL3P36405 182 aa14.97□□□□□ -0.01
USP39-218ENST00000493829 ZNF266Q14584 549 aa14.97□□□□□ -0.01
USP39-218ENST00000493829 NSUN5P1Q3KNT7 163 aa14.97□□□□□ -0.01
USP39-218ENST00000493829 TEPPQ6URK8 271 aa14.97□□□□□ -0.01
USP39-218ENST00000493829 C8orf86Q6ZUL3 223 aa14.97□□□□□ -0.01
USP39-218ENST00000493829 TMEM158Q8WZ71 300 aa14.97□□□□□ -0.01
USP39-218ENST00000493829 DUX3Q96PT4 197 aa14.97□□□□□ -0.01
USP39-218ENST00000493829 MGST2Q99735 147 aa14.97□□□□□ -0.01
USP39-218ENST00000493829 WDR61Q9GZS3 305 aaKnown RBP14.97□□□□□ -0.01
USP39-218ENST00000493829 BORCS7-ASMTA0A0B4J1R7 106 aa14.96□□□□□ -0.01
USP39-218ENST00000493829 FNDC10F2Z333 226 aa14.96□□□□□ -0.01
USP39-218ENST00000493829 TGOLN2O43493 480 aa14.96□□□□□ -0.01
USP39-218ENST00000493829 IGLC1P0CG04 106 aa14.96□□□□□ -0.01
USP39-218ENST00000493829 CDX1P47902 265 aaPredicted RBP14.96□□□□□ -0.01
USP39-218ENST00000493829 ZNF90Q03938 601 aa14.96□□□□□ -0.01
USP39-218ENST00000493829 SCGB1C1Q8TD33 95 aa14.96□□□□□ -0.01
USP39-218ENST00000493829 PPP1R14BQ96C90 147 aa14.96□□□□□ -0.01
USP39-218ENST00000493829 RSG1Q9BU20 258 aa14.96□□□□□ -0.01
USP39-218ENST00000493829 TSSC4Q9Y5U2 329 aaPredicted RBP14.96□□□□□ -0.01
USP39-218ENST00000493829 RFNGQ9Y644 331 aa14.96□□□□□ -0.01
USP39-218ENST00000493829 THAP8Q8NA92 274 aa14.95□□□□□ -0.02
USP39-218ENST00000493829 C4orf3Q8WVX3 66 aa14.95□□□□□ -0.02
USP39-218ENST00000493829 TXN2Q99757 166 aa14.95□□□□□ -0.02
USP39-218ENST00000493829 PEF1Q9UBV8 284 aaKnown RBP14.95□□□□□ -0.02
USP39-218ENST00000493829 TENM1Q9UKZ4 2725 aa14.95□□□□□ -0.02
USP39-218ENST00000493829 AGPAT2O15120 278 aa14.94□□□□□ -0.02
USP39-218ENST00000493829 NUPL2O15504 423 aaKnown RBP14.94□□□□□ -0.02
USP39-218ENST00000493829 IGKV1-17P01599 117 aa14.94□□□□□ -0.02
USP39-218ENST00000493829 CTSGP08311 255 aa14.94□□□□□ -0.02
USP39-218ENST00000493829 GATA2P23769 480 aaPredicted RBP14.94□□□□□ -0.02
USP39-218ENST00000493829 ADMP35318 185 aa14.94□□□□□ -0.02
USP39-218ENST00000493829 NPCDR1Q9BY65 106 aa14.94□□□□□ -0.02
USP39-218ENST00000493829 SH3BGRL3Q9H299 93 aa14.94□□□□□ -0.02
USP39-218ENST00000493829 LSM4Q9Y4Z0 139 aaKnown RBP14.94□□□□□ -0.02
USP39-218ENST00000493829 IGHV4OR15-8A0A075B7B6 117 aa14.93□□□□□ -0.02
USP39-218ENST00000493829 A0A087WW49 117 aa14.93□□□□□ -0.02
USP39-218ENST00000493829 I3L521 148 aa14.93□□□□□ -0.02
USP39-218ENST00000493829 BMPR1BO00238 502 aa14.93□□□□□ -0.02
USP39-218ENST00000493829 FCGR2BP31994 310 aaPredicted RBP14.93□□□□□ -0.02
USP39-218ENST00000493829 CAMLGP49069 296 aa14.93□□□□□ -0.02
USP39-218ENST00000493829 GGTLC1Q9BX51 225 aa14.93□□□□□ -0.02
USP39-218ENST00000493829 IGHV3OR16-8A0A075B7F1 116 aa14.93□□□□□ -0.02
USP39-218ENST00000493829 TMEM182Q6ZP80 229 aaPredicted RBP14.93□□□□□ -0.02
USP39-218ENST00000493829 CYP2G1PQ6ZSU1 146 aa14.93□□□□□ -0.02
USP39-218ENST00000493829 GAR1Q9NY12 217 aaKnown RBP14.93□□□□□ -0.02
USP39-218ENST00000493829 TRAV30A0A087WSZ9 112 aa14.92□□□□□ -0.02
USP39-218ENST00000493829 SCGB2A1O75556 95 aa14.92□□□□□ -0.02
USP39-218ENST00000493829 JTBO76095 146 aa14.92□□□□□ -0.02
USP39-218ENST00000493829 OR2C1O95371 312 aa14.92□□□□□ -0.02
USP39-218ENST00000493829 MIC13Q5XKP0 118 aa14.92□□□□□ -0.02
USP39-218ENST00000493829 BPIFCQ8NFQ6 507 aa14.92□□□□□ -0.02
USP39-218ENST00000493829 TRGV9Q99603 122 aa14.92□□□□□ -0.02
USP39-218ENST00000493829 ADARB2-AS1A8MUL3 147 aa14.91□□□□□ -0.02
USP39-218ENST00000493829 ATP6V0CP27449 155 aa14.91□□□□□ -0.02
USP39-218ENST00000493829 RAB31Q13636 194 aa14.91□□□□□ -0.02
USP39-218ENST00000493829 C12orf54Q6X4T0 127 aa14.91□□□□□ -0.02
USP39-218ENST00000493829 ZNF709Q8N972 641 aa14.91□□□□□ -0.02
USP39-218ENST00000493829 OR11H1Q8NG94 326 aa14.91□□□□□ -0.02
USP39-218ENST00000493829 YIF1AO95070 293 aa14.9□□□□□ -0.02
USP39-218ENST00000493829 C4BPBP20851 252 aa14.9□□□□□ -0.02
USP39-218ENST00000493829 ELLP55199 621 aaPredicted RBP14.9□□□□□ -0.02
USP39-218ENST00000493829 SPSB3Q6PJ21 355 aa14.9□□□□□ -0.02
USP39-218ENST00000493829 CITED1Q99966 193 aa14.9□□□□□ -0.02
USP39-218ENST00000493829 PARD6GQ9BYG4 376 aaPredicted RBP14.9□□□□□ -0.02
USP39-218ENST00000493829 GGCTO75223 188 aaKnown RBP14.9□□□□□ -0.02
USP39-218ENST00000493829 MPDU1O75352 247 aa14.9□□□□□ -0.02
USP39-218ENST00000493829 RD3LP0DJH9 198 aa14.9□□□□□ -0.02
USP39-218ENST00000493829 PSG1P11464 419 aa14.9□□□□□ -0.02
USP39-218ENST00000493829 TPT1P13693 172 aaKnown RBP14.9□□□□□ -0.02
USP39-218ENST00000493829 SLURP1P55000 103 aa14.9□□□□□ -0.02
USP39-218ENST00000493829 ZNF616Q08AN1 781 aa14.9□□□□□ -0.02
USP39-218ENST00000493829 RPEL1Q2QD12 228 aa14.9□□□□□ -0.02
USP39-218ENST00000493829 SLC51BQ86UW2 128 aa14.9□□□□□ -0.02
USP39-218ENST00000493829 NDUFA11Q86Y39 141 aa14.9□□□□□ -0.02
USP39-218ENST00000493829 STPG3Q8N7X2 389 aa14.9□□□□□ -0.02
USP39-218ENST00000493829 C3orf56Q8N813 242 aa14.9□□□□□ -0.02
USP39-218ENST00000493829 RAX2Q96IS3 184 aa14.9□□□□□ -0.02
USP39-218ENST00000493829 DOK5Q9P104 306 aa14.9□□□□□ -0.02
USP39-218ENST00000493829 PUS1Q9Y606 427 aaKnown RBP eCLIP14.9□□□□□ -0.02
USP39-218ENST00000493829 PXMP4Q9Y6I8 212 aa14.9□□□□□ -0.02
USP39-218ENST00000493829 C17orf112F2Z3M2 114 aa14.89□□□□□ -0.03
USP39-218ENST00000493829 TOMM40O96008 361 aa14.89□□□□□ -0.03
USP39-218ENST00000493829 HSPB1P04792 205 aaKnown RBP14.89□□□□□ -0.03
USP39-218ENST00000493829 LINC00869P0C866 280 aa14.89□□□□□ -0.03
USP39-218ENST00000493829 LYZP61626 148 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms