RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 NDUFAF3Q9BU61 184 aa9.95□□□□□ -0.82
SQSTM1-208ENST00000485412 KRTAP4-5Q9BYR2 181 aa9.95□□□□□ -0.82
SQSTM1-208ENST00000485412 TMEM231Q9H6L2 316 aa9.95□□□□□ -0.82
SQSTM1-208ENST00000485412 TBC1D24Q9ULP9 559 aa9.95□□□□□ -0.82
SQSTM1-208ENST00000485412 NXPH3O95157 252 aa9.94□□□□□ -0.82
SQSTM1-208ENST00000485412 IGLC1P0CG04 106 aa9.94□□□□□ -0.82
SQSTM1-208ENST00000485412 DHRS2Q13268 280 aa9.94□□□□□ -0.82
SQSTM1-208ENST00000485412 USF2Q15853 346 aaPredicted RBP9.94□□□□□ -0.82
SQSTM1-208ENST00000485412 TRIM16LQ309B1 348 aa9.94□□□□□ -0.82
SQSTM1-208ENST00000485412 RNASE10Q5GAN6 216 aaKnown RBP9.94□□□□□ -0.82
SQSTM1-208ENST00000485412 OR13C8Q8NGS7 320 aa9.94□□□□□ -0.82
SQSTM1-208ENST00000485412 RAB40CQ96S21 281 aa9.94□□□□□ -0.82
SQSTM1-208ENST00000485412 FUNDC2Q9BWH2 189 aa9.94□□□□□ -0.82
SQSTM1-208ENST00000485412 PLA2G2EQ9NZK7 142 aa9.94□□□□□ -0.82
SQSTM1-208ENST00000485412 A0A1W2PS18 150 aa9.93□□□□□ -0.82
SQSTM1-208ENST00000485412 CORTO00230 105 aa9.93□□□□□ -0.82
SQSTM1-208ENST00000485412 UCP1P25874 307 aa9.93□□□□□ -0.82
SQSTM1-208ENST00000485412 RND2P52198 227 aa9.93□□□□□ -0.82
SQSTM1-208ENST00000485412 LGALS9BQ3B8N2 356 aa9.93□□□□□ -0.82
SQSTM1-208ENST00000485412 FAAP20Q6NZ36 180 aa9.93□□□□□ -0.82
SQSTM1-208ENST00000485412 PRSS54Q6PEW0 395 aa9.93□□□□□ -0.82
SQSTM1-208ENST00000485412 C16orf54Q6UWD8 224 aa9.93□□□□□ -0.82
SQSTM1-208ENST00000485412 ZNF575Q86XF7 245 aa9.93□□□□□ -0.82
SQSTM1-208ENST00000485412 UBE2DNLQ8IWF7 75 aa9.93□□□□□ -0.82
SQSTM1-208ENST00000485412 MARCH1Q8TCQ1 289 aa9.93□□□□□ -0.82
SQSTM1-208ENST00000485412 ZNF486Q96H40 463 aaPredicted RBP9.93□□□□□ -0.82
SQSTM1-208ENST00000485412 ABHD1Q96SE0 405 aa9.93□□□□□ -0.82
SQSTM1-208ENST00000485412 PDCD10Q9BUL8 212 aa9.93□□□□□ -0.82
SQSTM1-208ENST00000485412 NAA50Q9GZZ1 169 aaKnown RBP9.93□□□□□ -0.82
SQSTM1-208ENST00000485412 XCL2Q9UBD3 114 aa9.93□□□□□ -0.82
SQSTM1-208ENST00000485412 NACAE9PAV3 2078 aa9.92□□□□□ -0.82
SQSTM1-208ENST00000485412 HELTA6NFD8 242 aa9.92□□□□□ -0.82
SQSTM1-208ENST00000485412 FAM90A26D6RGX4 464 aa9.92□□□□□ -0.82
SQSTM1-208ENST00000485412 IFNA10P01566 189 aa9.92□□□□□ -0.82
SQSTM1-208ENST00000485412 OR5AC1P0C628 307 aa9.92□□□□□ -0.82
SQSTM1-208ENST00000485412 SUB1P53999 127 aaKnown RBP eCLIP9.92□□□□□ -0.82
SQSTM1-208ENST00000485412 DHODHQ02127 395 aa9.92□□□□□ -0.82
SQSTM1-208ENST00000485412 MEF2DQ14814 521 aa9.92□□□□□ -0.82
SQSTM1-208ENST00000485412 GDF5OSQ5U4N7 250 aa9.92□□□□□ -0.82
SQSTM1-208ENST00000485412 LRP1BQ9NZR2 4599 aa9.92□□□□□ -0.82
SQSTM1-208ENST00000485412 IGLV2-18A0A075B6J9 118 aa9.91□□□□□ -0.82
SQSTM1-208ENST00000485412 FAM25AB3EWG3 89 aa9.91□□□□□ -0.82
SQSTM1-208ENST00000485412 FAM25CB3EWG5 89 aa9.91□□□□□ -0.82
SQSTM1-208ENST00000485412 FAM25GB3EWG6 89 aa9.91□□□□□ -0.82
SQSTM1-208ENST00000485412 IFNA21P01568 189 aa9.91□□□□□ -0.82
SQSTM1-208ENST00000485412 NPY1RP25929 384 aa9.91□□□□□ -0.82
SQSTM1-208ENST00000485412 TMBIM6P55061 237 aa9.91□□□□□ -0.82
SQSTM1-208ENST00000485412 SCGB2B2Q4G0G5 96 aa9.91□□□□□ -0.82
SQSTM1-208ENST00000485412 AARDQ4LEZ3 155 aa9.91□□□□□ -0.82
SQSTM1-208ENST00000485412 SOHLH1Q5JUK2 328 aa9.91□□□□□ -0.82
SQSTM1-208ENST00000485412 ARRDC1Q8N5I2 433 aa9.91□□□□□ -0.82
SQSTM1-208ENST00000485412 RNASE11Q8TAA1 199 aaKnown RBP9.91□□□□□ -0.82
SQSTM1-208ENST00000485412 RRNAD1Q96FB5 475 aaKnown RBP9.91□□□□□ -0.82
SQSTM1-208ENST00000485412 BCL7BQ9BQE9 202 aa9.91□□□□□ -0.82
SQSTM1-208ENST00000485412 ENY2Q9NPA8 101 aa9.91□□□□□ -0.82
SQSTM1-208ENST00000485412 PRR13Q9NZ81 148 aa9.91□□□□□ -0.82
SQSTM1-208ENST00000485412 COPZ2Q9P299 210 aa9.91□□□□□ -0.82
SQSTM1-208ENST00000485412 MTFP1Q9UDX5 166 aa9.91□□□□□ -0.82
SQSTM1-208ENST00000485412 CACNG5Q9UF02 275 aa9.91□□□□□ -0.82
SQSTM1-208ENST00000485412 RSL24D1Q9UHA3 163 aaKnown RBP9.91□□□□□ -0.82
SQSTM1-208ENST00000485412 H3BMM0 161 aa9.9□□□□□ -0.82
SQSTM1-208ENST00000485412 IL4P05112 153 aa9.9□□□□□ -0.82
SQSTM1-208ENST00000485412 HNRNPCP07910 306 aaKnown RBP eCLIP9.9□□□□□ -0.82
SQSTM1-208ENST00000485412 OR10J1P30954 320 aa9.9□□□□□ -0.82
SQSTM1-208ENST00000485412 FXYD7P58549 80 aa9.9□□□□□ -0.82
SQSTM1-208ENST00000485412 SPCS3P61009 180 aa9.9□□□□□ -0.82
SQSTM1-208ENST00000485412 CNPY1Q3B7I2 92 aa9.9□□□□□ -0.82
SQSTM1-208ENST00000485412 SELENOHQ8IZQ5 122 aaKnown RBP9.9□□□□□ -0.82
SQSTM1-208ENST00000485412 OR1S2Q8NGQ3 325 aa9.9□□□□□ -0.82
SQSTM1-208ENST00000485412 TERB2Q8NHR7 220 aa9.9□□□□□ -0.82
SQSTM1-208ENST00000485412 GLYATL2Q8WU03 294 aa9.9□□□□□ -0.82
SQSTM1-208ENST00000485412 GPR146Q96CH1 333 aa9.9□□□□□ -0.82
SQSTM1-208ENST00000485412 RTBDNQ9BSG5 229 aaPredicted RBP9.9□□□□□ -0.82
SQSTM1-208ENST00000485412 TMEM222Q9H0R3 208 aa9.9□□□□□ -0.82
SQSTM1-208ENST00000485412 EXTL2Q9UBQ6 330 aa9.9□□□□□ -0.82
SQSTM1-208ENST00000485412 CDS2O95674 445 aa9.89□□□□□ -0.83
SQSTM1-208ENST00000485412 IGKV3-20P01619 116 aa9.89□□□□□ -0.83
SQSTM1-208ENST00000485412 CD74P04233 296 aa9.89□□□□□ -0.83
SQSTM1-208ENST00000485412 HTR2BP41595 481 aa9.89□□□□□ -0.83
SQSTM1-208ENST00000485412 C2orf83Q53S99 150 aa9.89□□□□□ -0.83
SQSTM1-208ENST00000485412 CLVS1Q8IUQ0 354 aaPredicted RBP9.89□□□□□ -0.83
SQSTM1-208ENST00000485412 CCDC71LQ8N9Z2 235 aa9.89□□□□□ -0.83
SQSTM1-208ENST00000485412 SLC24A4Q8NFF2 622 aa9.89□□□□□ -0.83
SQSTM1-208ENST00000485412 RAB2BQ8WUD1 216 aa9.89□□□□□ -0.83
SQSTM1-208ENST00000485412 NPIPB3Q92617 1050 aa9.89□□□□□ -0.83
SQSTM1-208ENST00000485412 ACY3Q96HD9 319 aa9.89□□□□□ -0.83
SQSTM1-208ENST00000485412 NARS2Q96I59 477 aaKnown RBP9.89□□□□□ -0.83
SQSTM1-208ENST00000485412 MIXL1Q9H2W2 232 aa9.89□□□□□ -0.83
SQSTM1-208ENST00000485412 HEYLQ9NQ87 328 aaPredicted RBP9.89□□□□□ -0.83
SQSTM1-208ENST00000485412 TRAV30A0A087WSZ9 112 aa9.88□□□□□ -0.83
SQSTM1-208ENST00000485412 BUB3O43684 328 aa9.88□□□□□ -0.83
SQSTM1-208ENST00000485412 ATG12O94817 140 aa9.88□□□□□ -0.83
SQSTM1-208ENST00000485412 RAB3DO95716 219 aa9.88□□□□□ -0.83
SQSTM1-208ENST00000485412 RORCP51449 518 aa9.88□□□□□ -0.83
SQSTM1-208ENST00000485412 EMP1P54849 157 aa9.88□□□□□ -0.83
SQSTM1-208ENST00000485412 YPEL3P61236 119 aaPredicted RBP9.88□□□□□ -0.83
SQSTM1-208ENST00000485412 GPR107Q5VW38 600 aa9.88□□□□□ -0.83
SQSTM1-208ENST00000485412 TMEM229BQ8NBD8 167 aa9.88□□□□□ -0.83
SQSTM1-208ENST00000485412 OR51G1Q8NGK1 321 aa9.88□□□□□ -0.83
SQSTM1-208ENST00000485412 ZFAND1Q8TCF1 268 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 100.6 ms