RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 B9A039 149 aa11.11□□□□□ -0.63
USP40-208ENST00000450966 LHFPL1Q86WI0 220 aa11.11□□□□□ -0.63
USP40-208ENST00000450966 CCL19Q99731 98 aa11.11□□□□□ -0.63
USP40-208ENST00000450966 TRIP12Q14669 1992 aaPredicted RBP11.1□□□□□ -0.63
USP40-208ENST00000450966 MESP2Q0VG99 397 aa11.1□□□□□ -0.63
USP40-208ENST00000450966 OVOL2Q9BRP0 275 aa11.1□□□□□ -0.63
USP40-208ENST00000450966 COL11A1P12107 1806 aaPredicted RBP11.1□□□□□ -0.63
USP40-208ENST00000450966 C9orf172C9J069 976 aa11.1□□□□□ -0.63
USP40-208ENST00000450966 FOXH1O75593 365 aa11.1□□□□□ -0.63
USP40-208ENST00000450966 INAFM2P0DMQ5 153 aa11.1□□□□□ -0.63
USP40-208ENST00000450966 KLRD1Q13241 179 aa11.1□□□□□ -0.63
USP40-208ENST00000450966 ZNF114Q8NC26 417 aa11.1□□□□□ -0.63
USP40-208ENST00000450966 IGLC1P0CG04 106 aa11.1□□□□□ -0.63
USP40-208ENST00000450966 FAM106CPP0CH98 169 aa11.1□□□□□ -0.63
USP40-208ENST00000450966 C15orf53Q8NAA6 179 aa11.1□□□□□ -0.63
USP40-208ENST00000450966 JMJD8Q96S16 334 aa11.1□□□□□ -0.63
USP40-208ENST00000450966 GFI1Q99684 422 aa11.1□□□□□ -0.63
USP40-208ENST00000450966 MGST3O14880 152 aa11.1□□□□□ -0.63
USP40-208ENST00000450966 SPINK2P20155 84 aa11.1□□□□□ -0.63
USP40-208ENST00000450966 SUPT4H1P63272 117 aaKnown RBP11.1□□□□□ -0.63
USP40-208ENST00000450966 IGLV3-21P80748 117 aaPredicted RBP11.1□□□□□ -0.63
USP40-208ENST00000450966 C18orf32Q8TCD1 76 aa11.1□□□□□ -0.63
USP40-208ENST00000450966 A0A1B0GUS0 222 aa11.09□□□□□ -0.63
USP40-208ENST00000450966 CFHR1Q03591 330 aa11.09□□□□□ -0.63
USP40-208ENST00000450966 PPP1R32Q7Z5V6 425 aa11.09□□□□□ -0.63
USP40-208ENST00000450966 NEU4Q8WWR8 484 aaPredicted RBP11.09□□□□□ -0.63
USP40-208ENST00000450966 H3BMG7 143 aa11.09□□□□□ -0.63
USP40-208ENST00000450966 ATP5J2P56134 94 aa11.09□□□□□ -0.63
USP40-208ENST00000450966 CCL8P80075 99 aa11.09□□□□□ -0.63
USP40-208ENST00000450966 FAM57AQ8TBR7 257 aa11.09□□□□□ -0.63
USP40-208ENST00000450966 PCM1Q15154 2024 aa11.09□□□□□ -0.63
USP40-208ENST00000450966 PLXNA1Q9UIW2 1896 aa11.09□□□□□ -0.63
USP40-208ENST00000450966 EBLN2Q6P2I7 272 aa11.09□□□□□ -0.63
USP40-208ENST00000450966 Q6ZVH6 145 aa11.09□□□□□ -0.63
USP40-208ENST00000450966 A0A0J9YW62 118 aa11.09□□□□□ -0.63
USP40-208ENST00000450966 RPL27AP46776 148 aaKnown RBP11.09□□□□□ -0.63
USP40-208ENST00000450966 PNRC2Q9NPJ4 139 aaKnown RBP11.09□□□□□ -0.63
USP40-208ENST00000450966 WDR83OSQ9Y284 106 aa11.09□□□□□ -0.63
USP40-208ENST00000450966 KNTC1P50748 2209 aa11.09□□□□□ -0.63
USP40-208ENST00000450966 C16orf54Q6UWD8 224 aa11.08□□□□□ -0.64
USP40-208ENST00000450966 GCSAMQ8N6F7 178 aa11.08□□□□□ -0.64
USP40-208ENST00000450966 C1orf162Q8NEQ5 155 aaPredicted RBP11.08□□□□□ -0.64
USP40-208ENST00000450966 DLL3Q9NYJ7 618 aa11.08□□□□□ -0.64
USP40-208ENST00000450966 TRAV24A0A0B4J272 114 aa11.08□□□□□ -0.64
USP40-208ENST00000450966 NRTNQ99748 197 aa11.08□□□□□ -0.64
USP40-208ENST00000450966 IGHMP01871 453 aa11.08□□□□□ -0.64
USP40-208ENST00000450966 RPP25LQ8N5L8 163 aaKnown RBP11.08□□□□□ -0.64
USP40-208ENST00000450966 C1QTNF5Q9BXJ0 243 aa11.08□□□□□ -0.64
USP40-208ENST00000450966 ASCC3Q8N3C0 2202 aaKnown RBP11.08□□□□□ -0.64
USP40-208ENST00000450966 ZC2HC1BQ5TFG8 222 aa11.08□□□□□ -0.64
USP40-208ENST00000450966 OTORQ9NRC9 128 aa11.07□□□□□ -0.64
USP40-208ENST00000450966 IFI27L2Q9H2X8 130 aa11.07□□□□□ -0.64
USP40-208ENST00000450966 SIGLEC8Q9NYZ4 499 aa11.07□□□□□ -0.64
USP40-208ENST00000450966 V9GYY9 64 aa11.07□□□□□ -0.64
USP40-208ENST00000450966 ZNFX1Q9P2E3 1918 aaKnown RBP11.07□□□□□ -0.64
USP40-208ENST00000450966 TRPM6Q9BX84 2022 aa11.07□□□□□ -0.64
USP40-208ENST00000450966 NPIPB4C9JG80 1138 aa11.07□□□□□ -0.64
USP40-208ENST00000450966 SMIM10L1P0DMW3 83 aa11.07□□□□□ -0.64
USP40-208ENST00000450966 NUP35Q8NFH5 326 aa11.07□□□□□ -0.64
USP40-208ENST00000450966 SMIM10Q96HG1 83 aa11.07□□□□□ -0.64
USP40-208ENST00000450966 ANXA2RQ3ZCQ2 193 aa11.07□□□□□ -0.64
USP40-208ENST00000450966 CACNG8Q8WXS5 425 aa11.07□□□□□ -0.64
USP40-208ENST00000450966 CCL13Q99616 98 aa11.07□□□□□ -0.64
USP40-208ENST00000450966 SLC25A47Q6Q0C1 308 aa11.06□□□□□ -0.64
USP40-208ENST00000450966 AMN1Q8IY45 258 aa11.06□□□□□ -0.64
USP40-208ENST00000450966 H7C1H1 209 aa11.06□□□□□ -0.64
USP40-208ENST00000450966 ZIC3O60481 467 aa11.06□□□□□ -0.64
USP40-208ENST00000450966 REG1BP48304 166 aa11.06□□□□□ -0.64
USP40-208ENST00000450966 PRSS53Q2L4Q9 553 aa11.06□□□□□ -0.64
USP40-208ENST00000450966 LHFPL6Q9Y693 200 aa11.06□□□□□ -0.64
USP40-208ENST00000450966 GREB1LQ9C091 1923 aaPredicted RBP11.06□□□□□ -0.64
USP40-208ENST00000450966 SS18L1O75177 396 aaPredicted RBP11.06□□□□□ -0.64
USP40-208ENST00000450966 SUMO2P61956 95 aaKnown RBP11.06□□□□□ -0.64
USP40-208ENST00000450966 DUX4L9Q6RFH8 374 aaPredicted RBP11.06□□□□□ -0.64
USP40-208ENST00000450966 ANKRD29Q8N6D5 301 aa11.06□□□□□ -0.64
USP40-208ENST00000450966 NPIPB3Q92617 1050 aa11.06□□□□□ -0.64
USP40-208ENST00000450966 YPEL1O60688 119 aa11.05□□□□□ -0.64
USP40-208ENST00000450966 LAGE3Q14657 143 aa11.05□□□□□ -0.64
USP40-208ENST00000450966 RRN3P1Q2M238 152 aa11.05□□□□□ -0.64
USP40-208ENST00000450966 CEND1Q8N111 149 aa11.05□□□□□ -0.64
USP40-208ENST00000450966 YPEL2Q96QA6 119 aa11.05□□□□□ -0.64
USP40-208ENST00000450966 EFNB3Q15768 340 aa11.05□□□□□ -0.64
USP40-208ENST00000450966 TMEM52Q8NDY8 209 aa11.05□□□□□ -0.64
USP40-208ENST00000450966 APELAP0DMC3 54 aa11.05□□□□□ -0.64
USP40-208ENST00000450966 PSG4Q00888 419 aa11.05□□□□□ -0.64
USP40-208ENST00000450966 JPT1Q9UK76 154 aa11.05□□□□□ -0.64
USP40-208ENST00000450966 NPIPB11E5RHQ5 1161 aa11.05□□□□□ -0.64
USP40-208ENST00000450966 FDCSPQ8NFU4 85 aa11.05□□□□□ -0.64
USP40-208ENST00000450966 Q9H3A6 140 aa11.05□□□□□ -0.64
USP40-208ENST00000450966 A0A0G2JMZ2 1700 aa11.05□□□□□ -0.64
USP40-208ENST00000450966 LRRC37A2A6NM11 1700 aa11.05□□□□□ -0.64
USP40-208ENST00000450966 LOC102723996A0A087X1L8 192 aa11.05□□□□□ -0.64
USP40-208ENST00000450966 NPIPB13A6NJU9 1138 aa11.05□□□□□ -0.64
USP40-208ENST00000450966 CNTFRP26992 372 aa11.05□□□□□ -0.64
USP40-208ENST00000450966 GNG5P63218 68 aa11.05□□□□□ -0.64
USP40-208ENST00000450966 NABP1Q96AH0 204 aa11.05□□□□□ -0.64
USP40-208ENST00000450966 PLEKHB2Q96CS7 222 aa11.05□□□□□ -0.64
USP40-208ENST00000450966 CLUHP3Q96NS8 147 aa11.05□□□□□ -0.64
USP40-208ENST00000450966 SLC25A20O43772 301 aa11.04□□□□□ -0.64
USP40-208ENST00000450966 DSCR9P59020 149 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 103 ms