RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 ZNF502Q8TBZ5 544 aa7.85□□□□□ -1.15
CD44-207ENST00000425428 Q8WTZ3 238 aa7.85□□□□□ -1.15
CD44-207ENST00000425428 OR5B12Q96R08 314 aa7.85□□□□□ -1.15
CD44-207ENST00000425428 OR4F4Q96R69 305 aa7.85□□□□□ -1.15
CD44-207ENST00000425428 MFSD2BA6NFX1 497 aa7.84□□□□□ -1.15
CD44-207ENST00000425428 TGOLN2O43493 480 aa7.84□□□□□ -1.15
CD44-207ENST00000425428 IGHV3-48P01763 117 aa7.84□□□□□ -1.15
CD44-207ENST00000425428 FGF7P21781 194 aa7.84□□□□□ -1.15
CD44-207ENST00000425428 NSUN5P1Q3KNT7 163 aa7.84□□□□□ -1.15
CD44-207ENST00000425428 EIF5AL1Q6IS14 154 aaKnown RBP7.84□□□□□ -1.15
CD44-207ENST00000425428 SHISA2Q6UWI4 295 aa7.84□□□□□ -1.15
CD44-207ENST00000425428 Q6ZRG5 221 aa7.84□□□□□ -1.15
CD44-207ENST00000425428 TMUB2Q71RG4 321 aa7.84□□□□□ -1.15
CD44-207ENST00000425428 KCNRGQ8N5I3 272 aa7.84□□□□□ -1.15
CD44-207ENST00000425428 BPIFCQ8NFQ6 507 aa7.84□□□□□ -1.15
CD44-207ENST00000425428 TMEM170AQ8WVE7 144 aa7.84□□□□□ -1.15
CD44-207ENST00000425428 NARS2Q96I59 477 aaKnown RBP7.84□□□□□ -1.15
CD44-207ENST00000425428 CITED2Q99967 270 aaPredicted RBP7.84□□□□□ -1.15
CD44-207ENST00000425428 FBXL17Q9UF56 701 aa7.84□□□□□ -1.15
CD44-207ENST00000425428 RNF24Q9Y225 148 aa7.84□□□□□ -1.15
CD44-207ENST00000425428 S4R3C0 116 aa7.84□□□□□ -1.15
CD44-207ENST00000425428 PMS2P5A8MQ11 134 aa7.84□□□□□ -1.15
CD44-207ENST00000425428 LINC01619G3V211 115 aa7.84□□□□□ -1.15
CD44-207ENST00000425428 YIF1AO95070 293 aa7.84□□□□□ -1.15
CD44-207ENST00000425428 PF4P02776 101 aa7.84□□□□□ -1.15
CD44-207ENST00000425428 DEFA5Q01523 94 aa7.84□□□□□ -1.15
CD44-207ENST00000425428 BTNL8Q6UX41 500 aa7.84□□□□□ -1.15
CD44-207ENST00000425428 GNPNAT1Q96EK6 184 aaPredicted RBP7.84□□□□□ -1.15
CD44-207ENST00000425428 TRGV9Q99603 122 aa7.84□□□□□ -1.15
CD44-207ENST00000425428 GINS3Q9BRX5 216 aa7.84□□□□□ -1.15
CD44-207ENST00000425428 ZNF471Q9BX82 626 aaPredicted RBP7.84□□□□□ -1.15
CD44-207ENST00000425428 FNDC4Q9H6D8 234 aaPredicted RBP7.84□□□□□ -1.15
CD44-207ENST00000425428 DMRT1Q9Y5R6 373 aa7.84□□□□□ -1.15
CD44-207ENST00000425428 BCL2L11O43521 198 aa7.83□□□□□ -1.16
CD44-207ENST00000425428 RD3LP0DJH9 198 aa7.83□□□□□ -1.16
CD44-207ENST00000425428 BMI1P35226 326 aa7.83□□□□□ -1.16
CD44-207ENST00000425428 CAMLGP49069 296 aa7.83□□□□□ -1.16
CD44-207ENST00000425428 RUNX1Q01196 453 aa7.83□□□□□ -1.16
CD44-207ENST00000425428 ZNF616Q08AN1 781 aa7.83□□□□□ -1.16
CD44-207ENST00000425428 MLANAQ16655 118 aa7.83□□□□□ -1.16
CD44-207ENST00000425428 ZNF600Q6ZNG1 722 aa7.83□□□□□ -1.16
CD44-207ENST00000425428 OR11H4Q8NGC9 324 aa7.83□□□□□ -1.16
CD44-207ENST00000425428 OR1N2Q8NGR9 330 aa7.83□□□□□ -1.16
CD44-207ENST00000425428 MYOZ3Q8TDC0 251 aa7.83□□□□□ -1.16
CD44-207ENST00000425428 ZNF747Q9BV97 191 aa7.83□□□□□ -1.16
CD44-207ENST00000425428 RNF222A6NCQ9 220 aa7.82□□□□□ -1.16
CD44-207ENST00000425428 PRSS46E5RG02 174 aa7.82□□□□□ -1.16
CD44-207ENST00000425428 G3V3Q6 166 aa7.82□□□□□ -1.16
CD44-207ENST00000425428 M0QZ24 198 aa7.82□□□□□ -1.16
CD44-207ENST00000425428 BMPR1BO00238 502 aa7.82□□□□□ -1.16
CD44-207ENST00000425428 TPT1P13693 172 aaKnown RBP7.82□□□□□ -1.16
CD44-207ENST00000425428 YPEL3P61236 119 aaPredicted RBP7.82□□□□□ -1.16
CD44-207ENST00000425428 ARL16Q0P5N6 197 aa7.82□□□□□ -1.16
CD44-207ENST00000425428 VWC2Q2TAL6 325 aa7.82□□□□□ -1.16
CD44-207ENST00000425428 TREML4Q6UXN2 200 aa7.82□□□□□ -1.16
CD44-207ENST00000425428 THAP8Q8NA92 274 aa7.82□□□□□ -1.16
CD44-207ENST00000425428 OR11H1Q8NG94 326 aa7.82□□□□□ -1.16
CD44-207ENST00000425428 OR51G1Q8NGK1 321 aa7.82□□□□□ -1.16
CD44-207ENST00000425428 WIPF2Q8TF74 440 aaPredicted RBP7.82□□□□□ -1.16
CD44-207ENST00000425428 PARD6GQ9BYG4 376 aaPredicted RBP7.82□□□□□ -1.16
CD44-207ENST00000425428 PEMTQ9UBM1 199 aa7.82□□□□□ -1.16
CD44-207ENST00000425428 WDR83OSQ9Y284 106 aa7.82□□□□□ -1.16
CD44-207ENST00000425428 CUBNO60494 3623 aa7.82□□□□□ -1.16
CD44-207ENST00000425428 ZNF320A2RRD8 509 aa7.82□□□□□ -1.16
CD44-207ENST00000425428 AGPAT2O15120 278 aa7.82□□□□□ -1.16
CD44-207ENST00000425428 PXDC1Q5TGL8 231 aa7.82□□□□□ -1.16
CD44-207ENST00000425428 CYP2G1PQ6ZSU1 146 aa7.82□□□□□ -1.16
CD44-207ENST00000425428 C8orf86Q6ZUL3 223 aa7.82□□□□□ -1.16
CD44-207ENST00000425428 SLC51BQ86UW2 128 aa7.82□□□□□ -1.16
CD44-207ENST00000425428 HAPLN4Q86UW8 402 aa7.82□□□□□ -1.16
CD44-207ENST00000425428 CITED1Q99966 193 aa7.82□□□□□ -1.16
CD44-207ENST00000425428 WDR61Q9GZS3 305 aaKnown RBP7.82□□□□□ -1.16
CD44-207ENST00000425428 ATRQ13535 2644 aa7.81□□□□□ -1.16
CD44-207ENST00000425428 PPP5D1E7EU14 171 aa7.81□□□□□ -1.16
CD44-207ENST00000425428 I3L521 148 aa7.81□□□□□ -1.16
CD44-207ENST00000425428 CCL24O00175 119 aa7.81□□□□□ -1.16
CD44-207ENST00000425428 NDUFA4O00483 81 aa7.81□□□□□ -1.16
CD44-207ENST00000425428 TOMM40O96008 361 aa7.81□□□□□ -1.16
CD44-207ENST00000425428 MBP02144 154 aa7.81□□□□□ -1.16
CD44-207ENST00000425428 IGLC1P0CG04 106 aa7.81□□□□□ -1.16
CD44-207ENST00000425428 CXCL2P19875 107 aa7.81□□□□□ -1.16
CD44-207ENST00000425428 MYCNOSP40205 109 aa7.81□□□□□ -1.16
CD44-207ENST00000425428 CD300CQ08708 224 aa7.81□□□□□ -1.16
CD44-207ENST00000425428 OPCMLQ14982 345 aa7.81□□□□□ -1.16
CD44-207ENST00000425428 LGALSLQ3ZCW2 172 aaPredicted RBP7.81□□□□□ -1.16
CD44-207ENST00000425428 TIGITQ495A1 244 aa7.81□□□□□ -1.16
CD44-207ENST00000425428 TCTEX1D4Q5JR98 221 aa7.81□□□□□ -1.16
CD44-207ENST00000425428 HSD17B11Q8NBQ5 300 aa7.81□□□□□ -1.16
CD44-207ENST00000425428 OR1L4Q8NGR5 311 aa7.81□□□□□ -1.16
CD44-207ENST00000425428 CCDC140Q96MF4 163 aa7.81□□□□□ -1.16
CD44-207ENST00000425428 PFDN5Q99471 154 aa7.81□□□□□ -1.16
CD44-207ENST00000425428 C20orf24Q9BUV8 137 aa7.81□□□□□ -1.16
CD44-207ENST00000425428 ELOVL1Q9BW60 279 aa7.81□□□□□ -1.16
CD44-207ENST00000425428 UFC1Q9Y3C8 167 aa7.81□□□□□ -1.16
CD44-207ENST00000425428 OR2C1O95371 312 aa7.8□□□□□ -1.16
CD44-207ENST00000425428 TSPAN15O95858 294 aa7.8□□□□□ -1.16
CD44-207ENST00000425428 CTSGP08311 255 aa7.8□□□□□ -1.16
CD44-207ENST00000425428 KIAA0141Q14154 515 aaPredicted RBP7.8□□□□□ -1.16
CD44-207ENST00000425428 GPHB5Q86YW7 130 aa7.8□□□□□ -1.16
CD44-207ENST00000425428 GRAMD2BQ96HH9 432 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 93.9 ms