RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 ID3Q02535 119 aa4.8□□□□□ -1.64
USP54-202ENST00000413442 BAK1Q16611 211 aa4.8□□□□□ -1.64
USP54-202ENST00000413442 HAGHQ16775 308 aa4.8□□□□□ -1.64
USP54-202ENST00000413442 C1orf194Q5T5A4 169 aa4.8□□□□□ -1.64
USP54-202ENST00000413442 GGNBP1Q5YKI7 109 aa4.8□□□□□ -1.64
USP54-202ENST00000413442 FAM90A2PQ658T7 463 aa4.8□□□□□ -1.64
USP54-202ENST00000413442 OR8G2PQ6IF36 304 aa4.8□□□□□ -1.64
USP54-202ENST00000413442 TOMM20LQ6UXN7 152 aa4.8□□□□□ -1.64
USP54-202ENST00000413442 UNQ9165/PRO28630Q6UXU0 137 aa4.8□□□□□ -1.64
USP54-202ENST00000413442 Q6ZWC4 215 aa4.8□□□□□ -1.64
USP54-202ENST00000413442 LYG2Q86SG7 212 aa4.8□□□□□ -1.64
USP54-202ENST00000413442 WFDC3Q8IUB2 231 aa4.8□□□□□ -1.64
USP54-202ENST00000413442 MITD1Q8WV92 249 aa4.8□□□□□ -1.64
USP54-202ENST00000413442 RCHY1Q96PM5 261 aa4.8□□□□□ -1.64
USP54-202ENST00000413442 CITED4Q96RK1 184 aa4.8□□□□□ -1.64
USP54-202ENST00000413442 RHPN1-AS1Q9BWJ2 59 aa4.8□□□□□ -1.64
USP54-202ENST00000413442 WDR12Q9GZL7 423 aaKnown RBP4.8□□□□□ -1.64
USP54-202ENST00000413442 FBXL17Q9UF56 701 aa4.8□□□□□ -1.64
USP54-202ENST00000413442 SLC45A2Q9UMX9 530 aa4.8□□□□□ -1.64
USP54-202ENST00000413442 IZUMO1RA6ND01 250 aa4.79□□□□□ -1.64
USP54-202ENST00000413442 A6NHS1 94 aa4.79□□□□□ -1.64
USP54-202ENST00000413442 LYRM1O43325 122 aa4.79□□□□□ -1.64
USP54-202ENST00000413442 TOMM40O96008 361 aa4.79□□□□□ -1.64
USP54-202ENST00000413442 HNRNPCP07910 306 aaKnown RBP eCLIP4.79□□□□□ -1.64
USP54-202ENST00000413442 RD3LP0DJH9 198 aa4.79□□□□□ -1.64
USP54-202ENST00000413442 PPP1R1AQ13522 171 aa4.79□□□□□ -1.64
USP54-202ENST00000413442 IZUMO4Q1ZYL8 232 aa4.79□□□□□ -1.64
USP54-202ENST00000413442 C4orf46Q504U0 113 aa4.79□□□□□ -1.64
USP54-202ENST00000413442 PRSS54Q6PEW0 395 aa4.79□□□□□ -1.64
USP54-202ENST00000413442 BTNL8Q6UX41 500 aa4.79□□□□□ -1.64
USP54-202ENST00000413442 C19orf35Q6ZS72 473 aa4.79□□□□□ -1.64
USP54-202ENST00000413442 STPG3Q8N7X2 389 aa4.79□□□□□ -1.64
USP54-202ENST00000413442 WDR89Q96FK6 387 aaPredicted RBP4.79□□□□□ -1.64
USP54-202ENST00000413442 SLC35E1Q96K37 410 aa4.79□□□□□ -1.64
USP54-202ENST00000413442 SMIM8Q96KF7 97 aa4.79□□□□□ -1.64
USP54-202ENST00000413442 RAB40CQ96S21 281 aa4.79□□□□□ -1.64
USP54-202ENST00000413442 GGACTQ9BVM4 153 aa4.79□□□□□ -1.64
USP54-202ENST00000413442 GGTLC1Q9BX51 225 aa4.79□□□□□ -1.64
USP54-202ENST00000413442 RBKSQ9H477 322 aa4.79□□□□□ -1.64
USP54-202ENST00000413442 FNDC4Q9H6D8 234 aaPredicted RBP4.79□□□□□ -1.64
USP54-202ENST00000413442 STRAPQ9Y3F4 350 aaKnown RBP4.79□□□□□ -1.64
USP54-202ENST00000413442 PUS1Q9Y606 427 aaKnown RBP eCLIP4.79□□□□□ -1.64
USP54-202ENST00000413442 S4R3C0 116 aa4.79□□□□□ -1.64
USP54-202ENST00000413442 U3KQE9 123 aa4.79□□□□□ -1.64
USP54-202ENST00000413442 DNASE2O00115 360 aaPredicted RBP4.78□□□□□ -1.64
USP54-202ENST00000413442 WRBO00258 174 aa4.78□□□□□ -1.64
USP54-202ENST00000413442 IGKV1-17P01599 117 aa4.78□□□□□ -1.64
USP54-202ENST00000413442 TCRBP04435 133 aa4.78□□□□□ -1.64
USP54-202ENST00000413442 CD7P09564 240 aa4.78□□□□□ -1.64
USP54-202ENST00000413442 IGLC1P0CG04 106 aa4.78□□□□□ -1.64
USP54-202ENST00000413442 OR10J1P30954 320 aa4.78□□□□□ -1.64
USP54-202ENST00000413442 NKX2-1P43699 371 aaPredicted RBP4.78□□□□□ -1.64
USP54-202ENST00000413442 SELENOTP62341 195 aa4.78□□□□□ -1.64
USP54-202ENST00000413442 ZNF846Q147U1 533 aa4.78□□□□□ -1.64
USP54-202ENST00000413442 PXDC1Q5TGL8 231 aa4.78□□□□□ -1.64
USP54-202ENST00000413442 SPATA31B1PQ5VZV4 182 aa4.78□□□□□ -1.64
USP54-202ENST00000413442 OR51G1Q8NGK1 321 aa4.78□□□□□ -1.64
USP54-202ENST00000413442 OR4D5Q8NGN0 318 aa4.78□□□□□ -1.64
USP54-202ENST00000413442 GATAD1Q8WUU5 269 aa4.78□□□□□ -1.64
USP54-202ENST00000413442 NPIPB3Q92617 1050 aa4.78□□□□□ -1.64
USP54-202ENST00000413442 GPR82Q96P67 336 aa4.78□□□□□ -1.64
USP54-202ENST00000413442 TRGV9Q99603 122 aa4.78□□□□□ -1.64
USP54-202ENST00000413442 SDHCQ99643 169 aaPredicted RBP4.78□□□□□ -1.64
USP54-202ENST00000413442 SRD5A3Q9H8P0 318 aa4.78□□□□□ -1.64
USP54-202ENST00000413442 ZFAND3Q9H8U3 227 aa4.78□□□□□ -1.64
USP54-202ENST00000413442 NPVFQ9HCQ7 196 aa4.78□□□□□ -1.64
USP54-202ENST00000413442 PTTG2Q9NZH5 202 aa4.78□□□□□ -1.64
USP54-202ENST00000413442 COL7A1Q02388 2944 aa4.78□□□□□ -1.64
USP54-202ENST00000413442 IGHV3-21A0A0B4J1V1 117 aa4.77□□□□□ -1.65
USP54-202ENST00000413442 IGHV3-35A0A0C4DH35 117 aa4.77□□□□□ -1.65
USP54-202ENST00000413442 FAM240BA0A1B0GVZ2 78 aa4.77□□□□□ -1.65
USP54-202ENST00000413442 ZFP92A6NM28 416 aa4.77□□□□□ -1.65
USP54-202ENST00000413442 PLA2G10O15496 165 aa4.77□□□□□ -1.65
USP54-202ENST00000413442 PRAF2O60831 178 aa4.77□□□□□ -1.65
USP54-202ENST00000413442 TSC22D2O75157 780 aa4.77□□□□□ -1.65
USP54-202ENST00000413442 IL5P05113 134 aa4.77□□□□□ -1.65
USP54-202ENST00000413442 HOXB5P09067 269 aa4.77□□□□□ -1.65
USP54-202ENST00000413442 PVALBP20472 110 aaPredicted RBP4.77□□□□□ -1.65
USP54-202ENST00000413442 MEOX2P50222 304 aa4.77□□□□□ -1.65
USP54-202ENST00000413442 RND2P52198 227 aa4.77□□□□□ -1.65
USP54-202ENST00000413442 DEFA1P59665 94 aa4.77□□□□□ -1.65
USP54-202ENST00000413442 DEFA3P59666 94 aa4.77□□□□□ -1.65
USP54-202ENST00000413442 CYCSP99999 105 aaKnown RBP4.77□□□□□ -1.65
USP54-202ENST00000413442 DHRS2Q13268 280 aa4.77□□□□□ -1.65
USP54-202ENST00000413442 ASAH1Q13510 395 aa4.77□□□□□ -1.65
USP54-202ENST00000413442 GAMTQ14353 236 aa4.77□□□□□ -1.65
USP54-202ENST00000413442 MLANAQ16655 118 aa4.77□□□□□ -1.65
USP54-202ENST00000413442 MORN3Q6PF18 240 aaPredicted RBP4.77□□□□□ -1.65
USP54-202ENST00000413442 C16orf54Q6UWD8 224 aa4.77□□□□□ -1.65
USP54-202ENST00000413442 TCF24Q7RTU0 167 aa4.77□□□□□ -1.65
USP54-202ENST00000413442 TMEM144Q7Z5S9 345 aa4.77□□□□□ -1.65
USP54-202ENST00000413442 DEFB125Q8N687 156 aa4.77□□□□□ -1.65
USP54-202ENST00000413442 TMEM217Q8N7C4 229 aa4.77□□□□□ -1.65
USP54-202ENST00000413442 MUC7Q8TAX7 377 aa4.77□□□□□ -1.65
USP54-202ENST00000413442 CLUHP3Q96NS8 147 aa4.77□□□□□ -1.65
USP54-202ENST00000413442 RNF2Q99496 336 aa4.77□□□□□ -1.65
USP54-202ENST00000413442 ASCL2Q99929 193 aa4.77□□□□□ -1.65
USP54-202ENST00000413442 GPN1Q9HCN4 374 aaPredicted RBP4.77□□□□□ -1.65
USP54-202ENST00000413442 RABAC1Q9UI14 185 aa4.77□□□□□ -1.65
USP54-202ENST00000413442 RBMY1BA6NDE4 496 aaKnown RBP4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 102.7 ms