RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 MRPL27Q9P0M9 148 aaKnown RBP14.95□□□□□ -0.02
CCDC3-201ENST00000378825 PRNDQ9UKY0 176 aa14.95□□□□□ -0.02
CCDC3-201ENST00000378825 H0YJW9 148 aa14.95□□□□□ -0.02
CCDC3-201ENST00000378825 CD69Q07108 199 aa14.95□□□□□ -0.02
CCDC3-201ENST00000378825 ZNF329Q86UD4 541 aa14.95□□□□□ -0.02
CCDC3-201ENST00000378825 PNKDQ8N490 385 aa14.95□□□□□ -0.02
CCDC3-201ENST00000378825 PPP1R35Q8TAP8 253 aa14.95□□□□□ -0.02
CCDC3-201ENST00000378825 CCL13Q99616 98 aa14.95□□□□□ -0.02
CCDC3-201ENST00000378825 FNDC4Q9H6D8 234 aaPredicted RBP14.95□□□□□ -0.02
CCDC3-201ENST00000378825 BET1LQ9NYM9 111 aa14.95□□□□□ -0.02
CCDC3-201ENST00000378825 hDV102S1A0JD36 115 aa14.94□□□□□ -0.02
CCDC3-201ENST00000378825 IGLV1-44P01699 117 aa14.94□□□□□ -0.02
CCDC3-201ENST00000378825 DEFB109BQ30KR1 87 aa14.94□□□□□ -0.02
CCDC3-201ENST00000378825 MRPS16Q9Y3D3 137 aaKnown RBP14.94□□□□□ -0.02
CCDC3-201ENST00000378825 PKDREJQ9NTG1 2253 aa14.94□□□□□ -0.02
CCDC3-201ENST00000378825 IGLC7A0M8Q6 106 aa14.94□□□□□ -0.02
CCDC3-201ENST00000378825 PEX7O00628 323 aa14.94□□□□□ -0.02
CCDC3-201ENST00000378825 CA7P43166 264 aa14.94□□□□□ -0.02
CCDC3-201ENST00000378825 COX19Q49B96 90 aa14.94□□□□□ -0.02
CCDC3-201ENST00000378825 BLNKQ8WV28 456 aa14.94□□□□□ -0.02
CCDC3-201ENST00000378825 ZNF738Q8NE65 137 aa14.94□□□□□ -0.02
CCDC3-201ENST00000378825 TOMM40O96008 361 aa14.93□□□□□ -0.02
CCDC3-201ENST00000378825 IGHG3P01860 377 aa14.93□□□□□ -0.02
CCDC3-201ENST00000378825 C2orf83Q53S99 150 aa14.93□□□□□ -0.02
CCDC3-201ENST00000378825 MPV17L2Q567V2 206 aa14.93□□□□□ -0.02
CCDC3-201ENST00000378825 FAM120AOSQ5T036 256 aa14.93□□□□□ -0.02
CCDC3-201ENST00000378825 NPIPB3Q92617 1050 aa14.93□□□□□ -0.02
CCDC3-201ENST00000378825 PAXXQ9BUH6 204 aa14.93□□□□□ -0.02
CCDC3-201ENST00000378825 COMMD5Q9GZQ3 224 aa14.93□□□□□ -0.02
CCDC3-201ENST00000378825 ZNF138P52744 262 aa14.93□□□□□ -0.02
CCDC3-201ENST00000378825 RNF24Q9Y225 148 aa14.93□□□□□ -0.02
CCDC3-201ENST00000378825 FNDC10F2Z333 226 aa14.92□□□□□ -0.02
CCDC3-201ENST00000378825 ZNF137PP52743 207 aa14.92□□□□□ -0.02
CCDC3-201ENST00000378825 KLF3P57682 345 aaPredicted RBP14.92□□□□□ -0.02
CCDC3-201ENST00000378825 DIAPH2-AS1Q14236 149 aa14.92□□□□□ -0.02
CCDC3-201ENST00000378825 POU2AF1Q16633 256 aa14.92□□□□□ -0.02
CCDC3-201ENST00000378825 WIPF2Q8TF74 440 aaPredicted RBP14.92□□□□□ -0.02
CCDC3-201ENST00000378825 SAP30LQ9HAJ7 183 aa14.92□□□□□ -0.02
CCDC3-201ENST00000378825 COX7A2P2O60397 106 aa14.92□□□□□ -0.02
CCDC3-201ENST00000378825 RNF151Q2KHN1 245 aa14.92□□□□□ -0.02
CCDC3-201ENST00000378825 MRPL20Q9BYC9 149 aaKnown RBP14.92□□□□□ -0.02
CCDC3-201ENST00000378825 C7orf69Q9H7B7 122 aa14.92□□□□□ -0.02
CCDC3-201ENST00000378825 H0Y8G0 127 aa14.91□□□□□ -0.02
CCDC3-201ENST00000378825 M0R1B8 84 aa14.91□□□□□ -0.02
CCDC3-201ENST00000378825 LHBP01229 141 aa14.91□□□□□ -0.02
CCDC3-201ENST00000378825 FBLN7Q53RD9 439 aa14.91□□□□□ -0.02
CCDC3-201ENST00000378825 MUC15Q8N387 334 aa14.91□□□□□ -0.02
CCDC3-201ENST00000378825 GRAMD2BQ96HH9 432 aa14.91□□□□□ -0.02
CCDC3-201ENST00000378825 ZNF257Q9Y2Q1 563 aa14.91□□□□□ -0.02
CCDC3-201ENST00000378825 ZNF292O60281 2723 aa14.91□□□□□ -0.02
CCDC3-201ENST00000378825 FOXE3Q13461 319 aa14.91□□□□□ -0.02
CCDC3-201ENST00000378825 FXYD5Q96DB9 178 aa14.91□□□□□ -0.02
CCDC3-201ENST00000378825 ZC2HC1AQ96GY0 325 aa14.91□□□□□ -0.02
CCDC3-201ENST00000378825 PMCHL2Q9BQD1 86 aa14.91□□□□□ -0.02
CCDC3-201ENST00000378825 TIMM8BQ9Y5J9 83 aaPredicted RBP14.91□□□□□ -0.02
CCDC3-201ENST00000378825 OR4C46A6NHA9 309 aa14.9□□□□□ -0.02
CCDC3-201ENST00000378825 MOSP00540 346 aa14.9□□□□□ -0.02
CCDC3-201ENST00000378825 APELAP0DMC3 54 aa14.9□□□□□ -0.02
CCDC3-201ENST00000378825 WT1-ASQ06250 92 aa14.9□□□□□ -0.02
CCDC3-201ENST00000378825 SSX8Q7RTT4 187 aa14.9□□□□□ -0.02
CCDC3-201ENST00000378825 C22orf15Q8WYQ4 148 aa14.9□□□□□ -0.02
CCDC3-201ENST00000378825 ZNF71Q9NQZ8 489 aaPredicted RBP14.9□□□□□ -0.02
CCDC3-201ENST00000378825 ZNF318Q5VUA4 2279 aa14.9□□□□□ -0.02
CCDC3-201ENST00000378825 IGKV1D-37A0A075B6S9 117 aa14.9□□□□□ -0.02
CCDC3-201ENST00000378825 KLF5Q13887 457 aaPredicted RBP14.9□□□□□ -0.02
CCDC3-201ENST00000378825 C10orf113Q5VZT2 155 aa14.9□□□□□ -0.02
CCDC3-201ENST00000378825 HARBI1Q96MB7 349 aa14.9□□□□□ -0.02
CCDC3-201ENST00000378825 PIEZO2Q9H5I5 2752 aa14.9□□□□□ -0.02
CCDC3-201ENST00000378825 IGHV3-21A0A0B4J1V1 117 aa14.89□□□□□ -0.03
CCDC3-201ENST00000378825 IGHV1-69-2A0A0G2JMI3 117 aa14.89□□□□□ -0.03
CCDC3-201ENST00000378825 CGB1A6NKQ9 187 aa14.89□□□□□ -0.03
CCDC3-201ENST00000378825 FSTL3O95633 263 aa14.89□□□□□ -0.03
CCDC3-201ENST00000378825 PIP4P1Q86T03 277 aa14.89□□□□□ -0.03
CCDC3-201ENST00000378825 ZNF596Q8TC21 504 aa14.89□□□□□ -0.03
CCDC3-201ENST00000378825 GTSF1Q8WW33 167 aa14.89□□□□□ -0.03
CCDC3-201ENST00000378825 TRAV17A0A0B4J275 112 aa14.89□□□□□ -0.03
CCDC3-201ENST00000378825 RPRMLQ8N4K4 120 aa14.89□□□□□ -0.03
CCDC3-201ENST00000378825 ZNF436-AS1Q8NC38 126 aaPredicted RBP14.89□□□□□ -0.03
CCDC3-201ENST00000378825 OR1L8Q8NGR8 309 aa14.89□□□□□ -0.03
CCDC3-201ENST00000378825 OR5B3Q8NH48 314 aa14.89□□□□□ -0.03
CCDC3-201ENST00000378825 PGLYRP4Q96LB8 373 aa14.89□□□□□ -0.03
CCDC3-201ENST00000378825 GAFA1Q96PS6 74 aa14.89□□□□□ -0.03
CCDC3-201ENST00000378825 ORM2P19652 201 aa14.88□□□□□ -0.03
CCDC3-201ENST00000378825 VAMP3Q15836 100 aa14.88□□□□□ -0.03
CCDC3-201ENST00000378825 RTL8BQ17RB0 113 aa14.88□□□□□ -0.03
CCDC3-201ENST00000378825 FAM231DQ6ZW35 169 aa14.88□□□□□ -0.03
CCDC3-201ENST00000378825 ASCL2Q99929 193 aa14.88□□□□□ -0.03
CCDC3-201ENST00000378825 TMEM70Q9BUB7 260 aa14.88□□□□□ -0.03
CCDC3-201ENST00000378825 NDUFA4L2Q9NRX3 87 aa14.88□□□□□ -0.03
CCDC3-201ENST00000378825 SLC25A15Q9Y619 301 aa14.88□□□□□ -0.03
CCDC3-201ENST00000378825 TPRP12270 2363 aaKnown RBP14.88□□□□□ -0.03
CCDC3-201ENST00000378825 IGHV1-24A0A0C4DH33 117 aa14.88□□□□□ -0.03
CCDC3-201ENST00000378825 A0A1B0GXF2 115 aa14.88□□□□□ -0.03
CCDC3-201ENST00000378825 OR2J3O76001 311 aa14.88□□□□□ -0.03
CCDC3-201ENST00000378825 TNFSF4P23510 183 aa14.88□□□□□ -0.03
CCDC3-201ENST00000378825 CFHR2P36980 270 aa14.88□□□□□ -0.03
CCDC3-201ENST00000378825 SLC25A48Q6ZT89 311 aaKnown RBP14.88□□□□□ -0.03
CCDC3-201ENST00000378825 BHLHA15Q7RTS1 189 aaPredicted RBP14.88□□□□□ -0.03
CCDC3-201ENST00000378825 LINC00305Q7Z4B0 112 aa14.88□□□□□ -0.03
CCDC3-201ENST00000378825 OR4C5Q8NGB2 326 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms