RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 UBE2G1P62253 170 aa13.24□□□□□ -0.29
SDC4-201ENST00000372733 ERHP84090 104 aaKnown RBP13.24□□□□□ -0.29
SDC4-201ENST00000372733 KLF5Q13887 457 aaPredicted RBP13.24□□□□□ -0.29
SDC4-201ENST00000372733 ZNF833PQ6ZTB9 187 aa13.24□□□□□ -0.29
SDC4-201ENST00000372733 OR8B3Q8NGG8 313 aa13.24□□□□□ -0.29
SDC4-201ENST00000372733 OR8B2Q96RD0 313 aa13.24□□□□□ -0.29
SDC4-201ENST00000372733 C7orf69Q9H7B7 122 aa13.24□□□□□ -0.29
SDC4-201ENST00000372733 IGLV3-9A0A075B6K5 115 aa13.24□□□□□ -0.29
SDC4-201ENST00000372733 IGKV1D-37A0A075B6S9 117 aa13.24□□□□□ -0.29
SDC4-201ENST00000372733 M0QZ24 198 aa13.24□□□□□ -0.29
SDC4-201ENST00000372733 CCL25O15444 150 aa13.24□□□□□ -0.29
SDC4-201ENST00000372733 APOA2P02652 100 aa13.24□□□□□ -0.29
SDC4-201ENST00000372733 IGLL1P15814 213 aa13.24□□□□□ -0.29
SDC4-201ENST00000372733 ZNF474Q6S9Z5 364 aaPredicted RBP13.24□□□□□ -0.29
SDC4-201ENST00000372733 LINC00574Q9H8X3 128 aa13.24□□□□□ -0.29
SDC4-201ENST00000372733 TRAV9-2A0A087WT02 112 aa13.23□□□□□ -0.29
SDC4-201ENST00000372733 TRAV17A0A0B4J275 112 aa13.23□□□□□ -0.29
SDC4-201ENST00000372733 C20orf202A1L168 122 aa13.23□□□□□ -0.29
SDC4-201ENST00000372733 C2orf70A6NJV1 201 aa13.23□□□□□ -0.29
SDC4-201ENST00000372733 CGB1A6NKQ9 187 aa13.23□□□□□ -0.29
SDC4-201ENST00000372733 H0YJW9 148 aa13.23□□□□□ -0.29
SDC4-201ENST00000372733 TCF24Q7RTU0 167 aa13.23□□□□□ -0.29
SDC4-201ENST00000372733 RPRMLQ8N4K4 120 aa13.23□□□□□ -0.29
SDC4-201ENST00000372733 OSR1Q8TAX0 266 aaPredicted RBP13.23□□□□□ -0.29
SDC4-201ENST00000372733 TTC28Q96AY4 2481 aa13.23□□□□□ -0.29
SDC4-201ENST00000372733 IGHV2-26A0A0B4J1V2 119 aa13.23□□□□□ -0.29
SDC4-201ENST00000372733 OR2J3O76001 311 aa13.23□□□□□ -0.29
SDC4-201ENST00000372733 FSTL3O95633 263 aa13.23□□□□□ -0.29
SDC4-201ENST00000372733 CCL3L1P16619 93 aa13.23□□□□□ -0.29
SDC4-201ENST00000372733 CD24P25063 80 aa13.23□□□□□ -0.29
SDC4-201ENST00000372733 OR2D3Q8NGH3 330 aa13.23□□□□□ -0.29
SDC4-201ENST00000372733 BLNKQ8WV28 456 aa13.23□□□□□ -0.29
SDC4-201ENST00000372733 URB1-AS1Q96HZ7 61 aa13.23□□□□□ -0.29
SDC4-201ENST00000372733 TCRBV4S1A1TA0A5B7 111 aa13.22□□□□□ -0.29
SDC4-201ENST00000372733 MOSP00540 346 aa13.22□□□□□ -0.29
SDC4-201ENST00000372733 SP9P0CG40 484 aa13.22□□□□□ -0.29
SDC4-201ENST00000372733 BPIFB3P59826 476 aa13.22□□□□□ -0.29
SDC4-201ENST00000372733 OR1L4Q8NGR5 311 aa13.22□□□□□ -0.29
SDC4-201ENST00000372733 ORAOV1Q8WV07 137 aa13.22□□□□□ -0.29
SDC4-201ENST00000372733 MRPS16Q9Y3D3 137 aaKnown RBP13.22□□□□□ -0.29
SDC4-201ENST00000372733 HIST1H1EP10412 219 aaKnown RBP13.22□□□□□ -0.29
SDC4-201ENST00000372733 PTTG1IPP53801 180 aa13.22□□□□□ -0.29
SDC4-201ENST00000372733 DIAPH2-AS1Q14236 149 aa13.22□□□□□ -0.29
SDC4-201ENST00000372733 PLA2G2CQ5R387 149 aa13.22□□□□□ -0.29
SDC4-201ENST00000372733 TIMM23BQ5SRD1 257 aa13.22□□□□□ -0.29
SDC4-201ENST00000372733 LINC00305Q7Z4B0 112 aa13.22□□□□□ -0.29
SDC4-201ENST00000372733 ST6GALNAC6Q969X2 333 aa13.22□□□□□ -0.29
SDC4-201ENST00000372733 SMG1Q96Q15 3661 aaKnown RBP13.21□□□□□ -0.29
SDC4-201ENST00000372733 A0A1B0GXF2 115 aa13.21□□□□□ -0.29
SDC4-201ENST00000372733 hADV38S2A0JD32 116 aa13.21□□□□□ -0.29
SDC4-201ENST00000372733 TM4SF5O14894 197 aa13.21□□□□□ -0.29
SDC4-201ENST00000372733 SLC25A5P05141 298 aaKnown RBP13.21□□□□□ -0.29
SDC4-201ENST00000372733 FOXA3P55318 350 aaPredicted RBP13.21□□□□□ -0.29
SDC4-201ENST00000372733 RUSC1-AS1Q66K80 236 aa13.21□□□□□ -0.3
SDC4-201ENST00000372733 RBMXL3Q8N7X1 1067 aaKnown RBP13.21□□□□□ -0.3
SDC4-201ENST00000372733 MYCNOSP40205 109 aa13.2□□□□□ -0.3
SDC4-201ENST00000372733 LINC00322Q6ZN03 302 aaPredicted RBP13.2□□□□□ -0.3
SDC4-201ENST00000372733 PDPNQ86YL7 162 aa13.2□□□□□ -0.3
SDC4-201ENST00000372733 OR4F17Q8NGA8 305 aa13.2□□□□□ -0.3
SDC4-201ENST00000372733 FLYWCH2Q96CP2 140 aaKnown RBP13.2□□□□□ -0.3
SDC4-201ENST00000372733 LINC00312Q9Y6C7 94 aa13.2□□□□□ -0.3
SDC4-201ENST00000372733 MBD3L4A6NDZ8 208 aaPredicted RBP13.2□□□□□ -0.3
SDC4-201ENST00000372733 MBD3L3A6NE82 208 aaPredicted RBP13.2□□□□□ -0.3
SDC4-201ENST00000372733 MBD3L5A6NJ08 208 aaPredicted RBP13.2□□□□□ -0.3
SDC4-201ENST00000372733 H3BTX0 84 aa13.2□□□□□ -0.3
SDC4-201ENST00000372733 ORM2P19652 201 aa13.2□□□□□ -0.3
SDC4-201ENST00000372733 FAM120AOSQ5T036 256 aa13.2□□□□□ -0.3
SDC4-201ENST00000372733 OR5AN1Q8NGI8 311 aa13.2□□□□□ -0.3
SDC4-201ENST00000372733 MBD3L2Q8NHZ7 208 aaPredicted RBP13.2□□□□□ -0.3
SDC4-201ENST00000372733 TPSG1Q9NRR2 321 aa13.2□□□□□ -0.3
SDC4-201ENST00000372733 EPDR1Q9UM22 224 aa13.2□□□□□ -0.3
SDC4-201ENST00000372733 COX11Q9Y6N1 276 aa13.2□□□□□ -0.3
SDC4-201ENST00000372733 TMEM30BQ3MIR4 351 aa13.19□□□□□ -0.3
SDC4-201ENST00000372733 TMEM177Q53S58 311 aa13.19□□□□□ -0.3
SDC4-201ENST00000372733 IGFL2Q6UWQ7 119 aa13.19□□□□□ -0.3
SDC4-201ENST00000372733 C22orf34Q6ZV56 151 aa13.19□□□□□ -0.3
SDC4-201ENST00000372733 LINC00173Q6ZV60 143 aa13.19□□□□□ -0.3
SDC4-201ENST00000372733 PCP4P48539 62 aa13.19□□□□□ -0.3
SDC4-201ENST00000372733 CCL8P80075 99 aa13.19□□□□□ -0.3
SDC4-201ENST00000372733 SSX8Q7RTT4 187 aa13.19□□□□□ -0.3
SDC4-201ENST00000372733 ATP5L2Q7Z4Y8 100 aa13.19□□□□□ -0.3
SDC4-201ENST00000372733 OR1B1Q8NGR6 318 aa13.19□□□□□ -0.3
SDC4-201ENST00000372733 TMEM167AQ8TBQ9 72 aa13.19□□□□□ -0.3
SDC4-201ENST00000372733 RNASE8Q8TDE3 154 aaKnown RBP13.19□□□□□ -0.3
SDC4-201ENST00000372733 CHRDL1Q9BU40 450 aa13.19□□□□□ -0.3
SDC4-201ENST00000372733 DYSFO75923 2080 aa13.19□□□□□ -0.3
SDC4-201ENST00000372733 PGPA6NDG6 321 aa13.18□□□□□ -0.3
SDC4-201ENST00000372733 C22orf46C9J442 243 aa13.18□□□□□ -0.3
SDC4-201ENST00000372733 HBBP68871 147 aa13.18□□□□□ -0.3
SDC4-201ENST00000372733 THAP8Q8NA92 274 aa13.18□□□□□ -0.3
SDC4-201ENST00000372733 ZNF596Q8TC21 504 aa13.18□□□□□ -0.3
SDC4-201ENST00000372733 PLXNB1O43157 2135 aa13.18□□□□□ -0.3
SDC4-201ENST00000372733 FCN3O75636 299 aa13.18□□□□□ -0.3
SDC4-201ENST00000372733 GTSF1Q8WW33 167 aa13.18□□□□□ -0.3
SDC4-201ENST00000372733 TMEM70Q9BUB7 260 aa13.18□□□□□ -0.3
SDC4-201ENST00000372733 GAL3ST2Q9H3Q3 398 aa13.18□□□□□ -0.3
SDC4-201ENST00000372733 RPP21Q9H633 154 aaKnown RBP13.18□□□□□ -0.3
SDC4-201ENST00000372733 IGHV1-69-2A0A0G2JMI3 117 aa13.17□□□□□ -0.3
SDC4-201ENST00000372733 IGLC7A0M8Q6 106 aa13.17□□□□□ -0.3
SDC4-201ENST00000372733 INS-IGF2F8WCM5 200 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms